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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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TailTimer Resource Report Resource Website 1+ mentions |
TailTimer (RRID:SCR_021277) | instrument resource | Device for automating tail immersion assay. Used for measuring acute thermal pain in rodents. Software recognizes several specific RFID keys as user interface commands, which allows TailTimer to be operated via RFID fobs. | Automating tail immersion assay, measuring acute thermal pain, pain in rodents, thermal pain | SCR_021277 | 2026-08-08 12:02:11 | 1 | ||||||||||||
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NWBwidgets Resource Report Resource Website 1+ mentions |
NWBwidgets (RRID:SCR_021154) | software resource | of widgets for visualization NWB data in Jupyter notebook. Widgets allow you to navigate through hierarchical structure of NWB file and visualize specific data elements. Designed to work with NWB 2.0 files and to be easy to extend. | visualization NWB data, Jupyter notebook, widgets library, NWB file hierarchical structure, | is listed by: Neurodata Without Borders | Free, Available for download, Freely available | https://www.nwb.org/tools/ | SCR_021154 | 2026-08-08 12:02:08 | 3 | |||||||||
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Bash Resource Report Resource Website 10+ mentions |
Bash (RRID:SCR_021268) | software resource | GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four. | GNU Project shell, command-line editing, unlimited size command history, job control, shell functions and aliases, indexed arrays of unlimited size, integer arithmetic | Free, Freely available | SCR_021268 | Bourne Again SHell | 2026-08-08 12:02:11 | 19 | ||||||||||
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Nikon: Eclipse E200 microscope Resource Report Resource Website 1+ mentions |
Nikon: Eclipse E200 microscope (RRID:SCR_021243) | instrument resource | Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments. | Educational microscope, anti mold design microscope, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Eclipse_E200 | SCR_021243 | Eclipse E200, Eclipse E200 microscope | 2026-08-08 12:02:03 | 4 | ||||||||
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Nikon: ECLIPSE Ti inverted microscope system Resource Report Resource Website 10+ mentions |
Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) | instrument resource | ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series. | ECLIPSE Ti Series, inverted microscopes, Nikon NIS-Elements software, instrument, equipment, USEDit | is related to: Nikon: ECLIPSE Ti2 inverted microscope | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021242 | Model_Number_Ti | SCR_021242 | Nikon ECLIPSE Ti inverted microscope | 2026-08-08 12:02:03 | 41 | ||||||||
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ggraph Resource Report Resource Website 50+ mentions |
ggraph (RRID:SCR_021239) | software resource, software application, data visualization software, data processing software | Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar. | Relational data structures support, data networks, data graphs, data trees | is related to: ggplot2 | Free, Available for download, Freely available | https://CRAN.R-project.org/package=ggraph, https://github.com/thomasp85/ggraph/ | SCR_021239 | grammar of graphics for relational data | 2026-08-08 12:02:10 | 53 | ||||||||
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Zeiss: Lattice Lightsheet 7 Resource Report Resource Website 1+ mentions |
Zeiss: Lattice Lightsheet 7 (RRID:SCR_021237) | instrument resource | System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage. | Instrument, equipment, USEDit, Lattice Light Sheet Microscopy, Gaussian light sheet microscopy, volumetric imaging of living cells, live cell imaging | is listed by: USEDit | Restricted | SCR_021237 | ZEISS Lattice Lightsheet 7 imaging system | 2026-08-08 12:02:10 | 1 | |||||||||
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Roche: Ventana DISCOVERY Ultra Resource Report Resource Website 10+ mentions |
Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) | instrument resource | Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH. | Immunohistochemistry processor, slide preparation, slide processing, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021254 | DISCOVERY ULTRA, Ventana DISCOVERY Ultra IHC/ISH research platform, VENTANA DISCOVERY ULTRA AUTOMATED SLIDE PREPARATION SYSTEM | 2026-08-08 12:02:10 | 18 | |||||||||
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ggalluvial Resource Report Resource Website 10+ mentions |
ggalluvial (RRID:SCR_021253) | software resource, software application, data visualization software, data processing software | Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows. | Alluvial plots extension, visualize frequency distributions over time, visualize frequency tables involving several categorical variables, |
is listed by: CRAN works with: ggplot2 |
Free, Available for download, Freely available | https://CRAN.R-project.org/package=ggalluvial, https://github.com/corybrunson/ggalluvial/ | SCR_021253 | 2026-08-08 12:02:04 | 18 | |||||||||
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Appyters Resource Report Resource Website 10+ mentions |
Appyters (RRID:SCR_021245) | web application, software resource | Collection of web-based software applications that enable users to execute bioinformatics workflows without coding. Turns Jupyter notebooks into fully functional standalone web-based bioinformatics applications. Each Appyter application introduces data entry form for uploading or fetching data, as well as for selecting options for various settings. Once user presses Submit, Appyter is executed in cloud and user is presented with Jupyter Notebook report that contain results. Report includes markdown text, interactive and static figures, and source code. Appyter users can share the link to the output report, as well as download the fully executable notebook for execution on other platforms. | Jupyter Notebooks, data-driven web apps collection, Jupyter Notebook results report |
is used by: Hypothesis Center has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24 CA224260; NHLBI U54 HL127624; NIH Office of the Director OT2 OD030160 |
DOI:10.1016/j.patter.2021.100213 | Free, Available for download, Freely available | https://github.com/MaayanLab/appyter, https://github.com/MaayanLab/appyter-catalog | SCR_021245 | 2026-08-08 12:02:10 | 16 | |||||||
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Social LEAP Resource Report Resource Website 1+ mentions |
Social LEAP (RRID:SCR_021382) | SLEAP | software resource | Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
NSF GRFP ; DGE 1148900;Princeton Porter Ogden Jacobus Fellowship;NIMH R00 MH109674;NIGMS DP2 GM137424;NSF ; DEB 1754476;R01 NS104899;NSF ; PHY 1734030; |
DOI:10.1101/2020.08.31.276246 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021382 | Social LEAP Estimates Animal Pose | 2026-08-08 12:02:11 | 9 | |||||
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IQVIA Resource Report Resource Website 10+ mentions |
IQVIA (RRID:SCR_021377) | commercial organization | IQVIA, formerly Quintiles and IMS Health, Inc., is an American multinational company serving the combined industries of health information technology and clinical research. | American company, health information technology, clinical research | is related to: Quintiles | SCR_021377 | 2026-08-08 12:02:11 | 49 | |||||||||||
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SHapley Additive ExPlanations Resource Report Resource Website 100+ mentions |
SHapley Additive ExPlanations (RRID:SCR_021362) | SHAP | software resource | Software tool as unified framework for interpreting predictions of machine learning models. Used to explain output of any machine learning model. Connects optimal credit allocation with local explanations using classic Shapley values from game theory and their related extensions. | Interpretable machine learning, interpreting predictions, machine learning models | Free, Available for download, Freely available | SCR_021362 | 2026-08-08 12:02:12 | 112 | ||||||||||
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XGBoost Resource Report Resource Website 100+ mentions |
XGBoost (RRID:SCR_021361) | software library, software resource, software toolkit | Open source software tool as library for implementation of gradient boosting with various machine learning algorithms.Optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.Supports regression, classification, ranking and user defined objectives. | Machine learning, gradient boosting, supports regression, supports classification, supports ranking, tree boosting system | DOI:10.1145/2939672.2939785 | Free, Available for download, Freely available | https://github.com/dmlc/xgboost/, https://cran.r-project.org/web/packages/xgboost/index.html | SCR_021361 | eXtreme Gradient Boosting | 2026-08-08 12:02:11 | 173 | ||||||||
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three.js Resource Report Resource Website 10+ mentions |
three.js (RRID:SCR_021357) | software library, software resource, software toolkit | Software tool as JavaScript 3D Library.Used to create and display animated 3D computer graphics on Web browser. Three.js scripts may be used in conjunction with HTML5 canvas element, SVG or WebGL. | Animated 3D computer graphics, JavaScript 3D library, create graphics, display graphics, 3D graphics | Free, Available for download, Freely available | SCR_021357 | 2026-08-08 12:02:11 | 16 | |||||||||||
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Protara Therapeutics Resource Report Resource Website |
Protara Therapeutics (RRID:SCR_021376) | commercial organization | Clinical stage company identifying and advancing transformative therapies for people with rare and specialty diseases. Former name was ArTara Therapeutics. | Identifying and advancing transformative therapies, people with rare and specialty diseases | is related to: Proteon Therapeutics | SCR_021376 | ArTara Therapeutics | 2026-08-08 12:02:05 | 0 | ||||||||||
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Pulse Pal Resource Report Resource Website |
Pulse Pal (RRID:SCR_021611) | software resource | Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision. | voltage pulses, pulse train generator, OpenBehavior |
is listed by: OpenBehavior is related to: Pulse Pal project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pulse-pal/ | SCR_021611 | 2026-08-08 12:02:16 | 0 | |||||||||
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SpikeGadgets Resource Report Resource Website 1+ mentions |
SpikeGadgets (RRID:SCR_021623) | commercial organization | Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way. | Open Behavior | is listed by: OpenBehavior | SCR_021623 | SpikeGadgets | 2026-08-08 12:02:16 | 1 | ||||||||||
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Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer Resource Report Resource Website 1+ mentions |
Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer (RRID:SCR_021629) | instrument resource | Compact, standalone vaporizer that uses either ambient air with internal air pump or compressed gas. It delivers only anesthetic required by animal according to its weight with flows down to 0.05 LPM. Low flow isoflurane anesthesia machine. | Kent Scientific, SomnoFlow, electronic vaporizer, vaporizer, instrument, equipment, USEDit | is listed by: USEDit | SCR_021629 | SomnoFlow Electronic Vaporizer, Kent Scientific SomnoFlow Electronic Vaporizer | 2026-08-08 12:02:11 | 3 | ||||||||||
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FreemoVR Resource Report Resource Website |
FreemoVR (RRID:SCR_021601) | software resource | Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system. | Virtual reality engine, ROS, OpenSceneGraph, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR project |
DOI:10.1038/nmeth.4399 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/freemovr/ | SCR_021601 | freemovr_engine | 2026-08-08 12:02:15 | 0 |
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