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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
starCAT Resource Report Resource Website |
starCAT (RRID:SCR_028475) | software resource, software toolkit, source code | Software pipeline that improves T cell characterization by simultaneously quantifying predefined gene expression programs (scRNA-Seq) capturing activation states and cellular subsets. Used to score cells based on a fixed, multidataset catalog of Gene Expression Programs from any tissues or cell-type. | T cell characterization, simultaneously quantifying predefined gene expression programs, gene expression programs, | NIAID P01AI148102; NHGRI U01HG012009; NIAMS R01AR063759; NHGRI R56HG013083; NHGRI T32HG002295; NIAMS T32AR007530 |
PMID:38746317 | Free, Available for download, Freely available | SCR_028475 | starCellAnnoTator, starCellAnnoTator (starCAT) | 2026-08-04 09:46:26 | 0 | ||||||||
|
Taiji Resource Report Resource Website |
Taiji (RRID:SCR_028464) | software resource, software toolkit, source code | Software integrative analysis pipeline for analyzing bulk/single-cell ATAC-seq and RNA-seq data. Integrative multi-omics data analysis framework. It can be used as a standalone pipeline to analyze ATAC-seq, RNA-seq, single cell ATAC-seq or Drop-seq data. Used to integrate diverse datasets and use these information to construct regulatory network and identify candidate driver genes. | integrative analysis, single-cell ATAC-seq data, RNA-seq data, identify driver transcription factors, construct regulatory network, identify candidate driver genes, | is organization facet of: University of California at San Diego; California; USA | NHGRI U54HG006997; NHGRI R01HG009626 |
PMID:30944857 | Free, Available for download, Freely available | https://taiji-pipeline.github.io/ | SCR_028464 | 2026-08-04 09:46:26 | 0 | |||||||
|
presto Resource Report Resource Website |
presto (RRID:SCR_028647) | software resource, software toolkit, source code | Software R package for fast Wilcoxon rank sum test and auROC analysis. | Wilcoxon rank sum test, auROC analysis, | NIAMS T32AR007530; NIAMS UH2AR067677; NHGRI U01HG009088; NHGRI U01HG009379; NIAMS R01AR063759 |
DOI:10.1101/653253 | Free, Available for download, Freely available | SCR_028647 | Presto | 2026-08-04 09:46:28 | 0 | ||||||||
|
HLAthena Resource Report Resource Website |
HLAthena (RRID:SCR_028691) | web application, software resource | Web tool and predictive model used by researchers to identify which small protein fragments (peptides) will be presented by human leukocyte antigen (HLA) proteins on the surface of cells. It is heavily used in the development of cancer immunotherapies and personalized | HLA-I presentation prediction, identify small protein fragments, human leukocyte antigen (HLA) proteins, surface of cells, | NCI RO1CA155010; NHLBI R01HL103532; NCI U24 CA224331; NCI R21 CA216772; NHGRI T32HG002295; NCI 5T32CA009172; NCI U24-CA210986; NCI U01 CA214125 |
PMID:31844290 | Free, Freely available | SCR_028691 | 2026-08-04 09:46:34 | 0 |
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