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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ACTman Resource Report Resource Website |
ACTman (RRID:SCR_023119) | software toolkit, software resource, software library | Software R library to automate labor intensive actigraphy data preprocessing and analyses steps while improving transparency, reproducibility, and scalability over software suites traditionally used in actigraphy research practice. Provides streamlined preprocessing while validating circadian rhythm and sleep analysis. | OpenBehavior, actigraphy data preprocessing, actigraphy data analyses, actigraphy, validating circadian rhythm and sleep analysis, | is listed by: OpenBehavior | European Research Council | DOI:S1440-2440(19)30287-7/fulltext | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=ACTman | SCR_023119 | Actigraphy Manager | 2026-08-04 09:45:10 | 0 | ||||||
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Pynapple Resource Report Resource Website |
Pynapple (RRID:SCR_023312) | data processing software, data analysis software, standalone software, software resource, software application, software toolkit | Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms. | OpenBehavior, neural data analysis, neuroscience data analysis, Pandas library objects, raw neuroscience data types, | is listed by: OpenBehavior | DOI:10.1101/2022.12.06.519376 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pynapple/ | SCR_023312 | 2026-08-04 09:45:14 | 0 | ||||||||
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Live Mouse Tracker Toolkit Analysis Resource Report Resource Website |
Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) | LMT Toolkit | web application, software resource | Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process. | OpenBehavior, check LMT data reliability, analyze Live Mouse Tracker data, compute and extract behavioral profiles, |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_024592 | , LMT Toolkit, lmt toolkit analysis, LMT toolkit analysis, LMT-toolkit, LMT-Toolkit Analysis, Live Mouse Tracker Toolkit | 2026-08-04 09:45:35 | 0 | |||||||
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Mousebytes Resource Report Resource Website 1+ mentions |
Mousebytes (RRID:SCR_017904) | storage service resource, data repository, service resource, database, data or information resource | Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available. | Data, mouse, cognition, imaging, genomics, integration, bio.tools, OpenBehavior |
is listed by: Debian is listed by: bio.tools is listed by: OpenBehavior has parent organization: Western University; Ontario; Canada |
Weston Brain Institute (Canada) ; Canadian Institute of Health Research ; NSERC ; Alzheimer’s Society of Canada ; Canadian First Research Excellence Fund (BrainsCAN) ; Brain Canada |
PMID:31825307 | Free, Freely available | SCR_021549, SCR_021598, r3d100013886, biotools:Mousebytes | https://bio.tools/MouseBytes, https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/, https://doi.org/10.17616/R31NJN7I | SCR_017904 | MouseBytes | 2026-08-04 09:44:14 | 4 | |||||
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Online Animal Tracker project Resource Report Resource Website |
Online Animal Tracker project (RRID:SCR_021386) | OAT | portal, project portal, data or information resource | Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | SCR_021386 | Online Animal Tracker | 2026-08-04 09:44:48 | 0 | ||||||||
|
DeepLabCut Project Resource Report Resource Website 50+ mentions |
DeepLabCut Project (RRID:SCR_021398) | portal, project portal, data or information resource | Project for markerless pose estimation of user defined body parts with deep learning. | OpenBehavior, animal pose estimation, markerless pose estimation, body parts, multi-animal pose estimation, B-SoID, Stytra, Kinemouse Wheel |
lists: DeepLabCut is listed by: OpenBehavior is related to: Anipose |
DOI:10.1038/s41593-018-0209-y | Free, Available for download, Freely Available | https://github.com/DeepLabCut/DeepLabCut | SCR_021398 | 2026-08-04 09:44:48 | 56 | ||||||||
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DeepFly3D project Resource Report Resource Website |
DeepFly3D project (RRID:SCR_021400) | portal, project portal, data or information resource | Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D |
DOI:10.7554/elife.48571 | Free, Freely available | SCR_021400 | DeepFly3D | 2026-08-04 09:44:48 | 0 | ||||||||
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LiftPose3D Resource Report Resource Website |
LiftPose3D (RRID:SCR_023049) | software application, software resource | Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates. | OpenBehavior, transforming 2D poses to 3D coordinates, kinematic studies, laboratory animals, tracking movements | is listed by: OpenBehavior | SNSF Project ; SNSF Eccellenza ; European Union Horizon 2020 ; Mexican National Council for Science and Technology |
PMID:34354294 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=LiftPose3D | SCR_023049 | 2026-08-04 09:45:10 | 0 | |||||||
|
Open Face Homecage Running Wheel Resource Report Resource Website |
Open Face Homecage Running Wheel (RRID:SCR_023642) | instrument resource, software resource | Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components. | Running wheels for mice, OpenBehavior, instrument, running wheels, 3D printed wheel, | is listed by: OpenBehavior | PMID:36241420 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/running-wheel/ | SCR_023642 | 2026-08-04 09:45:19 | 0 | ||||||||
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B-CALM Resource Report Resource Website 1+ mentions |
B-CALM (RRID:SCR_023884) | instrument resource, software resource | Open source system for behavioral control based on Arduino Mega microcontroller and MATLAB based graphical interface and analysis code. Behavior controller optimized and customized for associative learning and memory tasks. Provided software should be able to control many different types of hardware for different task configurations. | OpenBehavior, instrument, behavioral controller, associative learning and memory, | is listed by: OpenBehavior | NIMH R00MH118422; NIMH R01MH129582; NIAAA R01AA029661; Scott Alan Myers Endowed Professorship |
PMID:37464151 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/b-calm/ | SCR_023884 | 2026-08-04 09:45:22 | 1 | |||||||
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LabNet Resource Report Resource Website |
LabNet (RRID:SCR_023712) | software application, software resource | Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance. | OpenBehavior, parallel control over multiple behavioral systems, C++ optimized control layer, access to Raspberry Pi connected hardware, | is listed by: OpenBehavior | German Research Foundation | PMID:36583654 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/labnet/ | SCR_023712 | 2026-08-04 09:45:20 | 0 | |||||||
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M3 Platform Resource Report Resource Website |
M3 Platform (RRID:SCR_023425) | software application, software resource | Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior. | OpenBehavior, touchscreen behavioral platform, calcium imaging, animal behavioral testing.standardized measurements, neuronal activity, behavioral tasks, disease modeling, mice | is listed by: OpenBehavior | Canada First Research Excellence Fund | PMID:32691490 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/m3-platform-the-mcgill-mouse-miniscope-touchscreen-behavior-platform/ | SCR_023425 | McGill-Mouse-Miniscope (M3) Platform, McGill-Mouse-Miniscope platform | 2026-08-04 09:45:15 | 0 | ||||||
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Open Source Whisking Video Database Resource Report Resource Website |
Open Source Whisking Video Database (RRID:SCR_021407) | database, data or information resource | Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database portal |
DOI:10.1093/gigascience/giy134 | Free, Freely available | https://edspace.american.edu/openbehavior/project/open-source-whisking-video-database/ | SCR_021407 | 2026-08-04 09:44:48 | 0 | ||||||||
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Synaptic Vesicles Detection Resource Report Resource Website 10+ mentions |
Synaptic Vesicles Detection (RRID:SCR_024910) | data processing software, source code, software resource, software application, image analysis software | Software tool as Python based synaptic vesicle classifier algorithm to identify neurotransmitter vesicles in electron microscopy images using Pytorch. | OpenBehavior, synaptic vesicle classifier algorithm, identify neurotransmitter vesicles, electron microscopy images |
uses: PyTorch is listed by: OpenBehavior |
PMID:34983830 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/synaptic-vesicles-detection-and-localization/ | SCR_024910 | 2026-08-04 09:45:38 | 12 | ||||||||
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3DP Gustometer Resource Report Resource Website |
3DP Gustometer (RRID:SCR_025010) | instrument resource, software resource, source code | 3D printed pacifier shaped mouthpiece for fMRI compatible gustometers to deliver up to eight liquids during fMRI task. Can be utilized to study flavor, taste reactivity, reward or punishment with food, conditioning, and neurodegenerative conditions such as Alzheimers and Parkinsons, since taste and smell senses diminish early into disease acquisition. | OpenBehavior, pacifier shaped mouthpiece, 3D printed mouthpiece, mouthpiece, 3D mouthpiece with fMRI-compatible gustometer, | is listed by: OpenBehavior | PMID:34551958 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/3dp-gustometer/ | SCR_025010 | 3D Printed Gustometer | 2026-08-04 09:45:42 | 0 | |||||||
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SEB3R Resource Report Resource Website |
SEB3R (RRID:SCR_025161) | SEB3R | software application, software resource, source code | Software tool to automate and standardize ethologically driven observation of freely moving mice. Identifies different postures of mice and associates them with emotions, offering detailed analysis of their movements frame by frame. Used for tracking mouse body language and studying emotional behaviors. | OpenBehavior, rodents behavioral tracking in 3D, automate and standardize ethologically driven observation, freely moving mice, tracking mouse body language, emotional behavior, |
is listed by: OpenBehavior has parent organization: University of Trento; Trento; Italy |
PMID:37648448 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/seb3r/ | SCR_025161 | Stimulus Evoked Behavioral tracking in 3D for Rodents | 2026-08-04 09:45:41 | 0 | ||||||
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Lickometer Box Resource Report Resource Website |
Lickometer Box (RRID:SCR_025248) | instrument resource, software resource, source code | Lickometer system based on open-source hardware platform with user-friendly interface software, capable of simultaneously receiving data from eight automated cages with two drinking bottles each. Device to acquire high-quality and detailed data. Adaptable to new types of sensors or other neuroscience tools capable of measuring brain activity simultaneously to the behavior. | OpenBehavior, lickometer, simultaneously receiving data, eight automated cages, two drinking bottles, liquid intake, animal behavior, device | is listed by: OpenBehavior | PMID:35851299 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lickometer-box/ | SCR_025248 | Licktech | 2026-08-04 09:45:47 | 0 | |||||||
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HERBs Resource Report Resource Website |
HERBs (RRID:SCR_025381) | HERBs | instrument resource, software resource, source code | Open source hardware and software solution for flexible implementation of complex behaviors in head-fixed mice. Low cost and requires little to no programming experience. Allows neural activity to be seen during testing, which will show relations between neuronal activity and behavior during tasks such as alternative forced choice, GoNoGo, and sensory stimulus presentation. | OpenBehavior, head-fixed mice, relations between neuronal activity and behavior, alternative forced choice, GoNoGo, sensory stimulus presentation. | is listed by: OpenBehavior | PMID:37286343 | https://github.com/LurLab-UCI/HERBs/wiki, https://edspace.american.edu/openbehavior/project/herbs-2/, | SCR_025381 | Head-fixed Environment for Rodent BehaviorS | 2026-08-04 09:45:45 | 0 | |||||||
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E-Scope Resource Report Resource Website 1+ mentions |
E-Scope (RRID:SCR_025396) | instrument resource, software resource, source code | Miniaturized calcium imaging microscope with integrated dense electrode technology for synchronous acquisition of neural activity across distant regions of the brain. Device based off open-sourced UCLA Miniscope to synchronously measure single cell activity at or near spike-time resolution across distant brain regions in freely behaving mice. Used to perform calcium imaging, with dense electrode electrophysiological recording, allowing simultaneous recordings from two remote brain regions in freely behaving mouse. | OpenBehavior, miniatured microscope, calcium imaging microscope, microscope, synchronous acquisition, freely behaving mice, neural activity, brain distant regions, synchronously measure single cell activity, |
is listed by: OpenBehavior is related to: UCLA Miniscope project |
NICHD P50HD103577; NINDS U01NS122124; NINDS R01NS090930; NINDS 1R61NS119708; NSF NeuroNex Award |
PMID:37066345 | Free, Available for download, Freely available | http://miniscope.org/index.php/Main_Page, https://edspace.american.edu/openbehavior/?s=E-Scope | SCR_025396 | 2026-08-04 09:45:45 | 1 | |||||||
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FARESHARE Resource Report Resource Website |
FARESHARE (RRID:SCR_025330) | instrument resource, software resource, source code | Open source device for fluid tracking in socially housed rats. Device uses RFID and custom hardware to individually measure and record each rat's fluid consumption and licking microstructure. | OpenBehavior, device, fluid tracking, socially housed rats, | is listed by: OpenBehavior | DOI:10.1101/2023.10.06.561248 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/fareshare/ | SCR_025330 | Fluid Acquisition Recording in Socially Housed Animal Research | 2026-08-04 09:45:49 | 0 |
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