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Public research university with two primary campuses in Fredericton and Saint John, New Brunswick. University founded in 1785, holding the title of Canada's oldest English-language university ranked as the top university in Atlantic Canada and a leader in engineering, computer science, and entrepreneurship.
Proper citation: University of New Brunswick; Canada (RRID:SCR_028063) Copy
Web application to plan and document cloning and genome engineering. Open source and open access tool, FAIR data principles compatible, designed to simulate and/or document genetic manipulation processes used in every day synthetic biology and molecular biology.
Proper citation: OpenCloning (RRID:SCR_028030) Copy
https://www.shxinruan.com/sjjsxw/16.html
Device to systematically deprive mice/rats of sleep for a certain period each day. Uses feedback control by monitoring animal activity levels. It can activate the deprivation lever after the animal enters a specific sleep stage to deprive or break sleep. It has three working modes: feedback adjustment (software control mode), programmable adjustment (external control mode), and independent touch screen adjustment (standard mode). It can be used to create animal models of sleep deprivation or sleep breaking, and features precise adjustment and low physical exertion.
Proper citation: Shanghai Xinruan: Sleep Deprivation Device (RRID:SCR_027998) Copy
https://sourceforge.net/p/obo/mailman/message/59165700/
A structured controlled vocabulary of the anatomy of Drosophila melanogaster. These ontologies are query-able reference sources for information on Drosophila anatomy and developmental stages. They also provide controlled vocabularies for use in annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. They were originally developed by FlyBase, who continue to maintain them and have used them for over 200,000 annotations of phenotypes and expression. Extensive use of synonyms means that, given a suitably sophisticated autocomplete, users can find relevant content by searching with almost any anatomical term they find in the literature. These ontologies are developed in the web ontology language OWL2. Their extensive formalization in OWL can be used to drive sophisticated query systems.
Proper citation: Drosophila anatomy and development ontologies (RRID:SCR_001607) Copy
http://www.informatics.jax.org/cookbook/
A book adapted for the Web on the anatomy of the laboratory mouse by Margaret J. Cook, 143 pages, M.R.C. Laboratory Animals Centre, Carshalton, Surrey, England. Academic Press 1965. Mouse Externals, Skeleton, Viscera and Circulatory System are covered.
Proper citation: Anatomy of the Laboratory Mouse (RRID:SCR_001509) Copy
https://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology
A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase.
Proper citation: Teleost Anatomy Ontology (RRID:SCR_001610) Copy
http://neuro.imm.dtu.dk/wiki/Main_Page
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 10, 2025. Semantic wiki with structured information, primarily from functional and molecular neuroimaging papers, but there are also other types of papers, e.g., from personality genetics. It lists results from neuroimaging studies, such as Talairach coordinates and brain volume measurements, as well as software packages and brain regions. SQL dumps of the structured information in the wiki is available so complex queries can be formed. The Brede Wiki templates store the structured information from neuroscience papers and editors may add free format text. Template definitions format the data so it is presented as tables on the formatted wiki-page. From a given PMID a web-service can format information from PubMed for inclusion in the Brede Wiki. A Matlab script can extract coordinates from SPM5 and format them in the Talairach coordinate template format.
Proper citation: Brede Wiki (RRID:SCR_001411) Copy
https://github.com/vital-ai/vital-documentation/wiki/Vital-AI-Ontology
Ontology for the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. It provides a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.
Proper citation: Vital Signs Ontology (RRID:SCR_001422) Copy
http://www.dendrites.org/software
Dendritica is a program package for relating dendritic geometry and signal propagation. The programs are based on those used for the simulations described in the following paper: Vetter, P., Roth, A. & Husser, M. (2001). Action potential propagation in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85: 926-937. Dendritica can functionally be divided into three main parts: - Interactive morphological analysis and electrophysiological simulation of single cells - Automated batch simulations across a set of morphologies using the same simulation parameters - Automated analysis of batch simulation runs Dendritica requires NEURON 4.1.1 with some modifications described in Appendix 1. It was tested for NEURON 4.1.1 on Linux and SGI IRIX. Some modifications to the Dendritica code may be necessary in order to run it on older or newer versions of NEURON. Sponsors: This work was supported by the Wellcome Trust, the European Community, the Max-Planck-Gesellschaft, the Wellcome Trust 4-year PhD Programme in Neuroscience.
Proper citation: Dendritica: Software Tools for Studying Dendritic Signaling (RRID:SCR_001865) Copy
https://medicine.stonybrookmedicine.edu/pathology/neuropathology
This is a primer of basic neuropathology- The Central Nervous System and Skeletal Muscle. It is organized in chapters by category of disease with a separate chapter for skeletal muscle. Many of the diseases could be included in more than one chapter because of overlapping pathophysiology; in each case the disorder is included in a single section in the interest of convenience. In order to recognize pathology one must have a basic foundation in normal structure, so the first chapter is an overview of basic regional central nervous system structure and anatomy. It includes an introduction to neurohistology. Other chapters address the pathophysiology of different categories of disease and provide examples of gross and microscopic pathology when they are available.
Proper citation: Stony Brook University Medical Center: Neuropathology Primer (RRID:SCR_001866) Copy
Privately held company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study cell signaling pathways that impact human health.
Proper citation: Cell Signaling Technology (RRID:SCR_002071) Copy
http://omlc.ogi.edu/software/mc/
MCML is a Monte Carlo simulation program for Multi-layered Turbid Media with an infinitely narrow photon beam as the light source. The simulation is specified by an input text file called, for example, sample.mci, which can be modified by any simple text editor. The output is another text file called, for example, sample.mco. (The names are arbitrary.) CONV is a convolution program which uses the MCML output file to convolve for photon beams of any size in a Gaussian or flat field shape. CONV can provide a variety of output formats (reflectance, transmission, iso-fluence contours, etc.), which are compatible with standard graphics applications.
Proper citation: MCML and CONV (RRID:SCR_002419) Copy
http://www.thevirtualbrain.org/
Simulation software for modeling the entire human brain by combining structural and functional data from empirical neuroimaging data. It can generate local field potentials, EEG, MEG and fMRI BOLD data based on neural mass models. The user can also modify the model parameters to match clinical conditions from focal lesions or degenerative disorders.
Proper citation: Virtual brain (RRID:SCR_002249) Copy
https://github.com/seqan/seqan/tree/master/apps/mason2
Collection of software tools for simulating biological sequences, including simulations of genome fragment sampling, random genomic sequences, methylation levels, and NGS reads.
Proper citation: Mason (RRID:SCR_002476) Copy
National University of Rwanda located in the city of Butare and was established in 1963 by the government in cooperation with the Congregation of the Dominicans from the Province of Quebec, Canada.
Proper citation: University of Rwanda; Butare; Rwanda (RRID:SCR_028139) Copy
Public university, founded in 1962. It is a comprehensive institution focused on higher education, scientific research, and community extension services to promote innovation and sustainable development. The university offers various faculties, including agriculture, engineering, arts, sciences, and medicine.
Proper citation: Eduardo Mondlane University; Maputo; Mozambique (RRID:SCR_028146) Copy
Ethiopia's oldest and largest public research university, founded in 1950 and located in the capital, Addis Ababa. It is the premier higher education institution in the country, featuring multiple campuses, extensive postgraduate programs, and ranking high among East African universities.
Proper citation: Addis Ababa University; Addis Ababa; Ethiopia (RRID:SCR_028147) Copy
Public university in Uganda, established in 1989 in Mbarara to specialize in training health professionals. It is renowned for its focus on science, technology, and community-based education, offering programs in medicine, nursing, laboratory sciences, pharmacy, and computing.
Proper citation: Mbarara University of Science and Technology; Mbarara; Uganda (RRID:SCR_028149) Copy
Premier public university in Morogoro, Tanzania, founded in 1984, specializing in agriculture, forestry, veterinary sciences, and natural resources. Located at the foot of the Uluguru Mountains, it ranks among the top universities in Sub-Saharan Africa (27th in 2026), focusing on research-driven development.
Proper citation: Sokoine University of Agriculture; Morogoro; Tanzania (RRID:SCR_028140) Copy
Public research university established in 1954, specializing originally in agriculture. It is one of Ethiopia oldest higher education institutions, offering diverse undergraduate and postgraduate programs across various fields, with a major focus on agricultural research, science, and technology.
Proper citation: Haramaya University; Dire Dawa; Ethiopia (RRID:SCR_028142) Copy
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