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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of New Brunswick; Canada Resource Report Resource Website |
University of New Brunswick; Canada (RRID:SCR_028063) | university | Public research university with two primary campuses in Fredericton and Saint John, New Brunswick. University founded in 1785, holding the title of Canada's oldest English-language university ranked as the top university in Atlantic Canada and a leader in engineering, computer science, and entrepreneurship. | GRID grid.266820.8; ISNI 0000 0004 0402 6152; Crossref Funder ID 100009368; Wikidata Q1112515; | https://ror.org/05nkf0n29 | SCR_028063 | 2026-08-08 12:08:24 | 0 | |||||||||||
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OpenCloning Resource Report Resource Website |
OpenCloning (RRID:SCR_028030) | web application, software resource | Web application to plan and document cloning and genome engineering. Open source and open access tool, FAIR data principles compatible, designed to simulate and/or document genetic manipulation processes used in every day synthetic biology and molecular biology. | plan and document cloning and genome engineering, FAIR data principles, simulate, document, genetic manipulation processes, | Free, Available for download, Freely available | https://github.com/manulera/OpenCloning | SCR_028030 | 2026-08-08 12:08:15 | 0 | ||||||||||
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Shanghai Xinruan: Sleep Deprivation Device Resource Report Resource Website |
Shanghai Xinruan: Sleep Deprivation Device (RRID:SCR_027998) | instrument resource | Device to systematically deprive mice/rats of sleep for a certain period each day. Uses feedback control by monitoring animal activity levels. It can activate the deprivation lever after the animal enters a specific sleep stage to deprive or break sleep. It has three working modes: feedback adjustment (software control mode), programmable adjustment (external control mode), and independent touch screen adjustment (standard mode). It can be used to create animal models of sleep deprivation or sleep breaking, and features precise adjustment and low physical exertion. | mice, rat, systematically deprive sleep, certain period each day, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027998.pdf | SCR_027998 | 2026-08-08 12:08:20 | 0 | |||||||||||
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Drosophila anatomy and development ontologies Resource Report Resource Website |
Drosophila anatomy and development ontologies (RRID:SCR_001607) | FBbt | data or information resource, controlled vocabulary, ontology | A structured controlled vocabulary of the anatomy of Drosophila melanogaster. These ontologies are query-able reference sources for information on Drosophila anatomy and developmental stages. They also provide controlled vocabularies for use in annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. They were originally developed by FlyBase, who continue to maintain them and have used them for over 200,000 annotations of phenotypes and expression. Extensive use of synonyms means that, given a suitably sophisticated autocomplete, users can find relevant content by searching with almost any anatomical term they find in the literature. These ontologies are developed in the web ontology language OWL2. Their extensive formalization in OWL can be used to drive sophisticated query systems. | anatomy, development, developmental stage, gene expression, phenotype, owl |
is related to: OBO is related to: Flannotator is related to: REDfly Regulatory Element Database for Drosophilia is related to: Bgee: dataBase for Gene Expression Evolution has parent organization: FlyBase has parent organization: SourceForge |
NHGRI P41 HG000739 | Free, Freely available | nlx_153871 | SCR_001607 | Drosophila anatomy & dev ontologies | 2026-08-09 09:03:13 | 0 | ||||||
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Anatomy of the Laboratory Mouse Resource Report Resource Website 1+ mentions |
Anatomy of the Laboratory Mouse (RRID:SCR_001509) | Anatomy of the Laboratory Mouse | data or information resource, book, narrative resource | A book adapted for the Web on the anatomy of the laboratory mouse by Margaret J. Cook, 143 pages, M.R.C. Laboratory Animals Centre, Carshalton, Surrey, England. Academic Press 1965. Mouse Externals, Skeleton, Viscera and Circulatory System are covered. | anatomy, image collection | has parent organization: Mouse Genome Informatics (MGI) | Free, Freely available | nlx_153862 | SCR_001509 | The Anatomy of the Laboratory Mouse | 2026-08-09 09:03:11 | 1 | |||||||
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Teleost Anatomy Ontology Resource Report Resource Website 1+ mentions |
Teleost Anatomy Ontology (RRID:SCR_001610) | TAO | data or information resource, controlled vocabulary, ontology | A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase. | homology, anatomy, morphology, fish, obo, organismal, zebrafish anatomy |
uses: Zebrafish Anatomical Ontology uses: Common Anatomy Reference Ontology uses: Vertebrate Skeletal Anatomy Ontology is used by: Phenoscape Knowledgebase is listed by: BioPortal is listed by: OBO has parent organization: Phenoscape |
PMID:20547776 | Free, Freely available | nlx_153876 | http://purl.obolibrary.org/obo/tao.obo, http://bioportal.bioontology.org/ontologies/38362?p=terms | https://www.nescent.org/phenoscape/ | SCR_001610 | 2026-08-09 09:03:13 | 1 | |||||
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Brede Wiki Resource Report Resource Website |
Brede Wiki (RRID:SCR_001411) | data or information resource, wiki, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 10, 2025. Semantic wiki with structured information, primarily from functional and molecular neuroimaging papers, but there are also other types of papers, e.g., from personality genetics. It lists results from neuroimaging studies, such as Talairach coordinates and brain volume measurements, as well as software packages and brain regions. SQL dumps of the structured information in the wiki is available so complex queries can be formed. The Brede Wiki templates store the structured information from neuroscience papers and editors may add free format text. Template definitions format the data so it is presented as tables on the formatted wiki-page. From a given PMID a web-service can format information from PubMed for inclusion in the Brede Wiki. A Matlab script can extract coordinates from SPM5 and format them in the Talairach coordinate template format. | neuroinformatics, neuroscience, functional neuroimaging, molecular neuroimaging, fmri, mri, talairach, brain region, data sharing, mediawiki, sql |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is related to: Brede Database is related to: Brede Toolbox is related to: Brede Database has parent organization: Technical University of Denmark; Lyngby; Denmark |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-08130 | http://www.nitrc.org/projects/bredewiki | SCR_001411 | Brede Wiki - a neuroinformatics wiki | 2026-08-09 09:03:10 | 0 | |||||||
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Vital Signs Ontology Resource Report Resource Website 1+ mentions |
Vital Signs Ontology (RRID:SCR_001422) | VSO | data or information resource, controlled vocabulary, ontology | Ontology for the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. It provides a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. | ontology, controlled vocabulary, vital signs, data, measurement, blood pressure, body temperature, respiration rate, pulse rate | is used by: TRANSFoRm Clinical Data Integration Model | nif-0000-02605 | https://bioportal.bioontology.org/ontologies/VSO | http://code.google.com/p/vital-signs-ontology/ | SCR_001422 | vital-signs-ontology | 2026-08-09 09:03:10 | 1 | ||||||
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Dendritica: Software Tools for Studying Dendritic Signaling Resource Report Resource Website 1+ mentions |
Dendritica: Software Tools for Studying Dendritic Signaling (RRID:SCR_001865) | simulation software, software application, software resource | Dendritica is a program package for relating dendritic geometry and signal propagation. The programs are based on those used for the simulations described in the following paper: Vetter, P., Roth, A. & Husser, M. (2001). Action potential propagation in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85: 926-937. Dendritica can functionally be divided into three main parts: - Interactive morphological analysis and electrophysiological simulation of single cells - Automated batch simulations across a set of morphologies using the same simulation parameters - Automated analysis of batch simulation runs Dendritica requires NEURON 4.1.1 with some modifications described in Appendix 1. It was tested for NEURON 4.1.1 on Linux and SGI IRIX. Some modifications to the Dendritica code may be necessary in order to run it on older or newer versions of NEURON. Sponsors: This work was supported by the Wellcome Trust, the European Community, the Max-Planck-Gesellschaft, the Wellcome Trust 4-year PhD Programme in Neuroscience. | electrophysiological simulation, dendritic geometry, interactive, morphological, morphology, neuron, sigle cell, signal propagation | Free | http://www.dendrite.org/software.html | SCR_001865 | Dendritica | 2026-08-09 09:03:22 | 1 | |||||||||
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Stony Brook University Medical Center: Neuropathology Primer Resource Report Resource Website |
Stony Brook University Medical Center: Neuropathology Primer (RRID:SCR_001866) | data or information resource, book, narrative resource | This is a primer of basic neuropathology- The Central Nervous System and Skeletal Muscle. It is organized in chapters by category of disease with a separate chapter for skeletal muscle. Many of the diseases could be included in more than one chapter because of overlapping pathophysiology; in each case the disorder is included in a single section in the interest of convenience. In order to recognize pathology one must have a basic foundation in normal structure, so the first chapter is an overview of basic regional central nervous system structure and anatomy. It includes an introduction to neurohistology. Other chapters address the pathophysiology of different categories of disease and provide examples of gross and microscopic pathology when they are available. | anatomy, central nervous system, disease, gross pathology, microscopic pathology, neurohistology, neuropathology, pathology, pathophysioogy, skeletal muscle, structure | Free, Freely available | nif-0000-10438 | http://www.stonybrookmedicalcenter.org/body.cfm?id=1176 | SCR_001866 | Neuropathology Primer | 2026-08-09 09:03:17 | 0 | ||||||||
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Cell Signaling Technology Resource Report Resource Website 10000+ mentions |
Cell Signaling Technology (RRID:SCR_002071) | CST | commercial organization | Privately held company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study cell signaling pathways that impact human health. | antibodies, ELISA kits, ChIP kits, proteomic kits, cell signaling pathways | ISNI: 0000 0004 0580 0138, nlx_152330, Wikidata: Q3392342, SCR_004431, grid.420530.0, nif-0000-20826 | https://ror.org/03k4zc121 | SCR_002071 | 2026-08-09 09:03:27 | 12353 | |||||||||
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MCML and CONV Resource Report Resource Website |
MCML and CONV (RRID:SCR_002419) | MCML, MCML & CONV, CONV | simulation software, software application, software resource | MCML is a Monte Carlo simulation program for Multi-layered Turbid Media with an infinitely narrow photon beam as the light source. The simulation is specified by an input text file called, for example, sample.mci, which can be modified by any simple text editor. The output is another text file called, for example, sample.mco. (The names are arbitrary.) CONV is a convolution program which uses the MCML output file to convolve for photon beams of any size in a Gaussian or flat field shape. CONV can provide a variety of output formats (reflectance, transmission, iso-fluence contours, etc.), which are compatible with standard graphics applications. | optical imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Oregon Health and Science University; Oregon; USA |
PMID:9421660 PMID:19256707 |
Free, Available for download, Freely available | nlx_155791 | http://www.nitrc.org/projects/mcml | SCR_002419 | Monte Carlo for Multi-Layered media | 2026-08-09 09:03:28 | 0 | |||||
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Virtual brain Resource Report Resource Website 10+ mentions |
Virtual brain (RRID:SCR_002249) | tvb | simulation software, software application, software resource | Simulation software for modeling the entire human brain by combining structural and functional data from empirical neuroimaging data. It can generate local field potentials, EEG, MEG and fMRI BOLD data based on neural mass models. The user can also modify the model parameters to match clinical conditions from focal lesions or degenerative disorders. | dti, simulation, modeling, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Toronto; Ontario; Canada |
James S. McDonnell Foundation | PMID:23442172 PMID:23774395 |
Free, Freely available | nlx_155567 | http://www.nitrc.org/projects/tvb | SCR_002249 | thevirtualbrain.org, The Virtual Brain, thevirtualbrain | 2026-08-09 09:03:31 | 45 | ||||
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Mason Resource Report Resource Website 100+ mentions |
Mason (RRID:SCR_002476) | simulation software, software application, software resource | Collection of software tools for simulating biological sequences, including simulations of genome fragment sampling, random genomic sequences, methylation levels, and NGS reads. | read simulating software, sequencing simulation, haplotype simulation | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_00252 | SCR_002476 | Mason2 | 2026-08-09 09:03:28 | 169 | ||||||||
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University of Rwanda; Butare; Rwanda Resource Report Resource Website 1+ mentions |
University of Rwanda; Butare; Rwanda (RRID:SCR_028139) | university | National University of Rwanda located in the city of Butare and was established in 1963 by the government in cooperation with the Congregation of the Dominicans from the Province of Quebec, Canada. |
is parent organization of: University of Rwanda African Center of Excellence in Data Science Core Facility is parent organization of: University of Rwanda African Center of Excellence in Energy for Sustainable Development Core Facility is parent organization of: University of Rwanda African Center of Excellence in Internet of Things Core Facility is parent organization of: University of Rwanda African Centre of Excellence for Innovative Teaching and Learning Mathematics Science Core Facility |
, Crossref Funder ID 100017581, GRID grid.10818.30, ISNI 0000 0004 0620 2260, Wikidata Q19888178 | https://ror.org/00286hs46 | SCR_028139 | National University of Rwanda | 2026-08-08 12:08:24 | 3 | |||||||||
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Eduardo Mondlane University; Maputo; Mozambique Resource Report Resource Website 1+ mentions |
Eduardo Mondlane University; Maputo; Mozambique (RRID:SCR_028146) | university | Public university, founded in 1962. It is a comprehensive institution focused on higher education, scientific research, and community extension services to promote innovation and sustainable development. The university offers various faculties, including agriculture, engineering, arts, sciences, and medicine. |
is parent organization of: Eduardo Mondlane University Regional Center of Excellence in Engineering and Petroleum and Gas Technology Studies Core Facility is parent organization of: Eduardo Mondlane University Regional Center of Excellence in Agri-food Systems and Nutrition Core Facility |
GRID grid.8295.6 ISNI 0000 0001 0943 5818 Wikidata Q890884 | https://ror.org/05n8n9378 | SCR_028146 | 2026-08-08 12:08:24 | 1 | ||||||||||
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Addis Ababa University; Addis Ababa; Ethiopia Resource Report Resource Website 1+ mentions |
Addis Ababa University; Addis Ababa; Ethiopia (RRID:SCR_028147) | university | Ethiopia's oldest and largest public research university, founded in 1950 and located in the capital, Addis Ababa. It is the premier higher education institution in the country, featuring multiple campuses, extensive postgraduate programs, and ranking high among East African universities. |
is parent organization of: Addis Ababa University Africa Center of Excellence for Water Management Core Facility is parent organization of: Addis Ababa University Center for Innovative Drug Development and Therapeutic Trials for Africa Core Facility |
GRID grid.7123.7 ISNI 0000 0001 1250 5688 Crossref Funder ID 501100007941 Wikidata Q1238770 | https://ror.org/038b8e254 | SCR_028147 | 2026-08-08 12:08:25 | 3 | ||||||||||
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Mbarara University of Science and Technology; Mbarara; Uganda Resource Report Resource Website |
Mbarara University of Science and Technology; Mbarara; Uganda (RRID:SCR_028149) | university | Public university in Uganda, established in 1989 in Mbarara to specialize in training health professionals. It is renowned for its focus on science, technology, and community-based education, offering programs in medicine, nursing, laboratory sciences, pharmacy, and computing. | is parent organization of: Mbarara University of Science and Technology Africa Centre of Excellence Pharm-Bio Technology and Traditional Medicine Core Facility | GRID grid.33440.30 ISNI 0000 0001 0232 6272 Crossref Funder ID 501100009915 Wikidata Q514030 | https://ror.org/01bkn5154 | SCR_028149 | 2026-08-08 12:08:24 | 0 | ||||||||||
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Sokoine University of Agriculture; Morogoro; Tanzania Resource Report Resource Website |
Sokoine University of Agriculture; Morogoro; Tanzania (RRID:SCR_028140) | university | Premier public university in Morogoro, Tanzania, founded in 1984, specializing in agriculture, forestry, veterinary sciences, and natural resources. Located at the foot of the Uluguru Mountains, it ranks among the top universities in Sub-Saharan Africa (27th in 2026), focusing on research-driven development. | is parent organization of: Sokoine University of Agriculture Southern African Centre for Infectious Disease Surveillance Core Facility | GRID grid.11887.37 ISNI 0000 0000 9428 8105 Crossref Funder ID 501100023918 Wikidata Q4005900 | https://ror.org/00jdryp44 | SCR_028140 | 2026-08-08 12:08:16 | 0 | ||||||||||
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Haramaya University; Dire Dawa; Ethiopia Resource Report Resource Website |
Haramaya University; Dire Dawa; Ethiopia (RRID:SCR_028142) | university | Public research university established in 1954, specializing originally in agriculture. It is one of Ethiopia oldest higher education institutions, offering diverse undergraduate and postgraduate programs across various fields, with a major focus on agricultural research, science, and technology. | is parent organization of: Haramaya University Africa Center of Excellence for Climate Smart Agriculture and Biodiversity Conservation Core Facility | , Crossref Funder ID 501100004845, ISNI 0000 0001 0108 7468, Wikidata Q5654075, GRID grid.192267.9 | https://ror.org/059yk7s89 | SCR_028142 | 2026-08-08 12:08:25 | 0 |
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