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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software application, software resource | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | 2026-08-04 09:42:02 | 0 | |||||||||
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ACT Resource Report Resource Website |
ACT (RRID:SCR_009033) | ACT | software application, software resource | Software application that contains the following modules: ibd, calculates the proportion of gene shared identical by decent for a nuclear family; ibdn, (modified program of ERPA), which implements a method for assessing increased-allele sharing between all pairs of affected relatives within a pedigree; multic, multivariate analysis for complex traits; ml, estimation of variance components using maximum likelihood; ql, estimation of variance components using quasi likelihood; relcov, generates first degree relationship coefficients for extended families; sim2s, the simulation program that was used to test ACT; cage, Cohort Analysis for Genetic Epidemiology; gh: GeneHunter, heavily modified to assist multipoint calculation using multic; TDT: TDT programs written in SAS; gcc and f77 compilers are necessary. Executable programs are included for compatible operating systems, i.e., Solaris2.6. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, c++, unix, solaris 2.4 | is listed by: Genetic Analysis Software | nlx_153997 | http://www.epigenetic.org/Linkage/act.tar.gz | SCR_009033 | Analysis of Complex Traits | 2026-08-04 09:42:16 | 0 | |||||||
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S Resource Report Resource Website |
S (RRID:SCR_007646) | S | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154605 | SCR_007646 | 2026-08-04 09:41:56 | 0 | ||||||||
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LDA Resource Report Resource Website |
LDA (RRID:SCR_007527) | LDA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium. | gene, genetic, genomic, java, ms-windows, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154088 | SCR_007527 | Linkage Disequilibrium Analyzer | 2026-08-04 09:41:52 | 0 | |||||||
|
SNPHAP Resource Report Resource Website 10+ mentions |
SNPHAP (RRID:SCR_008456) | SNPHAP | software application, software resource | Software program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++ | is listed by: Genetic Analysis Software | nlx_154642 | SCR_008456 | 2026-08-04 09:42:08 | 30 | |||||||||
|
SIMCOAL Resource Report Resource Website 1+ mentions |
SIMCOAL (RRID:SCR_008450) | SIMCOAL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (9x/nt) | is listed by: Genetic Analysis Software | nlx_154620 | SCR_008450 | SIMulate COAlescence | 2026-08-04 09:42:08 | 8 | ||||||||
|
RVTESTS Resource Report Resource Website 50+ mentions |
RVTESTS (RRID:SCR_007639) | RVTESTS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154603 | SCR_007639 | Rare Variants TESTS | 2026-08-04 09:41:54 | 86 | ||||||||
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HAPLO 1 Resource Report Resource Website |
HAPLO 1 (RRID:SCR_009058) | HAPLO 1 | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that assigns each person the haplotype with the highest conditional probability using Elston-Stewart algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, (ansi standard), unix, sunos, solaris, hp | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154039 | SCR_009058 | Haplotyping with computation of conditional probabilities | 2026-08-04 09:42:16 | 0 | |||||||
|
SCOUT Resource Report Resource Website 10+ mentions |
SCOUT (RRID:SCR_009054) | SCOUT | software application, software resource | Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | nlx_154034 | SCR_009054 | 2026-08-04 09:42:18 | 40 | |||||||||
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HAPLOREC Resource Report Resource Website 1+ mentions |
HAPLOREC (RRID:SCR_009055) | HAPLOREC | software application, software resource | Software application for population-based haplotyping (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154036 | SCR_009055 | 2026-08-04 09:42:16 | 4 | |||||||||
|
SEGPATH Resource Report Resource Website 1+ mentions |
SEGPATH (RRID:SCR_009052) | SEGPATH | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software for segregation and pathway analysis. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154030 | http://www.biostat.wustl.edu/~mike/segpath/ | SCR_009052 | SEGregation analysis and PATH analysis | 2026-08-04 09:42:16 | 2 | ||||||
|
DISENTANGLER Resource Report Resource Website 1+ mentions |
DISENTANGLER (RRID:SCR_009161) | DISENTANGLER | software application, software resource | Software application that is a visualization technique for linkage disequilibrium mapping and haplotype analysis of multiple multi-allelic genetic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, java/jre1.5, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154284, bIotools:disentangler | https://bio.tools/disentangler | SCR_009161 | 2026-08-04 09:42:18 | 4 | ||||||||
|
ALOHOMORA Resource Report Resource Website 1+ mentions |
ALOHOMORA (RRID:SCR_009117) | ALOHOMORA | software application, software resource | Software application designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip(R) Human Mapping 10K Array. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, ms-window, linux, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154219, biotools:alohomora | https://bio.tools/alohomora | SCR_009117 | 2026-08-04 09:42:17 | 8 | ||||||||
|
ALP Resource Report Resource Website |
ALP (RRID:SCR_009118) | ALP | software application, software resource | Microsoft Windows application designed to analyze microsatellite DNA fragments separated on an Automated Laser Fluorescence sequencer. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154220 | SCR_009118 | Automated Linkage Preprocessor | 2026-08-04 09:42:18 | 0 | ||||||||
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SIMULAPLOT Resource Report Resource Website |
SIMULAPLOT (RRID:SCR_009079) | SIMULAPLOT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A tool designed to help visualize the joint effect of genes and continuous environmental covariates on complex human disease simulation models. | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154089 | http://www.chg.duke.edu/research/simlaplot.html | SCR_009079 | 2026-08-04 09:42:17 | 0 | |||||||
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TUNA Resource Report Resource Website 1+ mentions |
TUNA (RRID:SCR_009112) | TUNA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 22, 2016. Free software package for estimating allele frequencies for all the SNPs available in a population reference panel (e.g. HapMap data base) based on genotype data from a subset of markers (e.g. the Illumina HumanHap300 BeadChip SNP set) in a group of subjects (e.g. the cases in a case-control sample)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18057020 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154211 | SCR_009112 | Testing UNtyped Alleles | 2026-08-04 09:42:18 | 2 | ||||||
|
CASPAR Resource Report Resource Website 50+ mentions |
CASPAR (RRID:SCR_009074) | CASPAR | software application, software resource | Software application who''s main novel feature is conditional linkage analyses, in which the population can be subdivided according to criteria at some loci and analyzed for linkage at other loci. CASPAR uses simulation to overcome the problems inherent in such multiple testing. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:caspar, nlx_154071 | https://bio.tools/caspar | SCR_009074 | Computerized Affected Sibling Pair Analyzer and Reporter | 2026-08-04 09:42:17 | 52 | |||||||
|
WEBQTL Resource Report Resource Website 10+ mentions |
WEBQTL (RRID:SCR_009072) | WEBQTL | software application, software resource | An interactive web site useful for exploring the genetic modulation of thousands of phenotypes gathered over a 30-year period by hundreds of investigators using reference panels of recombinant inbred strains of mice. WebQTL includes dense error-checked genetic maps, as well as extensive gene expression data sets (Affymetrix) acquired across more than 35 strains of mice. WebQTL accepts user-entered traits for BXD, AXB/BXA, CXB, BXH, AKXD recombinant inbred strains. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, and, python, all via internet | is listed by: Genetic Analysis Software | nlx_154066 | http://www.webqtl.org/search.html | SCR_009072 | 2026-08-04 09:42:18 | 46 | ||||||||
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genehunter-imprinting Resource Report Resource Website 1+ mentions |
genehunter-imprinting (RRID:SCR_009104) | GENEHUNTER-TWOLOCUS | software application, software resource | Resource no longer in service. Documented on February 23,2021.Software tool as modification of GENEHUNTER software package . Allows for parametric multi-marker linkage analysis of dichotomous traits caused by imprinted genes. By specification of two heterozygote penetrance parameters, paternal and maternal origin of the disease allele can be treated differently in terms of probability of expression of the trait. | gene, genetic, genomic, c, unix, sunos, solaris, osf, hpux, aix, ultrix, linux, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
DOI:10.1086/302911 | Resource no longer in service. Documented on February 23,2021 | nlx_154199, biotools:genehunter-imprinting | https://bio.tools/genehunter-imprinting | http://www.staff.uni-marburg.de/~strauchk/software.html | SCR_009104 | GENEHUNTER-MODSCORE, GENEHUNTER-PLUS, GENEHUNTER, GENEHUNTER-IMPRINTING | 2026-08-04 09:42:19 | 1 | ||||
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GENEHUNTER-MODSCORE Resource Report Resource Website 1+ mentions |
GENEHUNTER-MODSCORE (RRID:SCR_009069) | GENEHUNTER-MODSCORE | software application, software resource | Software application that is an extension of GENEHUNTER-IMPRINTING, based on the original GENEHUNTER version 2.1 release 6, that allows for a MOD-score analysis, in which parametric LOD scores are maximized over the parameters of the trait model, i.e., the penetrances and disease allele frequency. As of version 2.0, it is possible to use sex-specific recombination frequencies. The genetic positions of markers can be automatically read from a publicly available genetic map. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sunos, solaris, osf, hpux, aix, ultrix, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154061 | http://www.staff.uni-marburg.de/~strauchk/software.html | SCR_009069 | 2026-08-04 09:42:18 | 1 |
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