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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
UBERON
 
Resource Report
Resource Website
50+ mentions
UBERON (RRID:SCR_010668) UBERON controlled vocabulary, data or information resource, ontology An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human. anatomy, comparative, evolution, organ system, anatomical structure, body part, organ, tissue, body, vertebrate, function, phenotype, expression, model organism, obo is used by: Neuroscience Information Framework
is listed by: BioPortal
is related to: Gene Ontology
has parent organization: OBO
ARRA ;
NSF ;
NHGRI 5R01HG004838;
NHGRI P41HG002273;
DOE DE-AC02-05CH11231;
NCRR 1U24RR029825-01;
NHGRI P41HG002273-09S1
PMID:22293552 nlx_74404 SCR_010668 Uber anatomy ontology, Uber-anatomy ontology 2026-09-12 12:57:21 62
AlloSource
 
Resource Report
Resource Website
1+ mentions
AlloSource (RRID:SCR_010683) AlloSource nonprofit organization AlloSource is a non-profit organization founded in 1994 on a promise to honor and respect the gift of donation by responsibly developing, processing and distributing life-saving and life-enhancing allografts for our communities. Today, each of our 300 employees continues to fulfill this promise through multi-shift, 360-day processing to the highest quality and service standards. We strive to be the tissue network patients and the world''s most respected transplant teams ask for by name. This is accomplished by understanding the needs of our doctors and by providing the best tissue for our recipients. We offer more than 200 standard and customized precision allograft products, and act as a trusted and knowledgeable partner to the medical community, all with the intention of maximizing medical impact. In 1995, Allosource evolved from a local tissue bank in Denver, Colorado into a national organization serving communities around the country. Today, AlloSource is one of the largest, most respected tissue banks in the United States. Through our growth we''ve remained committed to the wishes of donor families, the needs of our surgeon customers, and the hopes of our patient recipients. Our promise of doing more with life reflects our unwavering focus on integrity, quality, safety, and respect today, and into the future. is listed by: One Mind Biospecimen Bank Listing Crossref funder ID: 100007821, ISNI: 0000 0004 0444 4813, grid.468397.7, nlx_79067 https://ror.org/04x2e7745 SCR_010683 AlloSource 2026-09-12 12:57:21 3
Manhattan HIV Brain Bank
 
Resource Report
Resource Website
1+ mentions
Manhattan HIV Brain Bank (RRID:SCR_010520) MHBB biomaterial supply resource, brain bank, material resource, tissue bank Biorepository of tissues and fluids relevant for the neurologic, neuropsychologic, psychiatric and neuropathologic manifestations of HIV infection, linked to medical records and an on-going clinical trial for research use by the scientific community. The MHBB conducts a longitudinal, observational study that follows a group of HIV-infected individuals who have agreed to be fluid and organ donors for the purposes of AIDS research. They are currently the largest, multidisciplinary neuroAIDS cohort in New York City, the epicenter of the US HIV epidemic. Research participants undergo regular neurologic, neuropsychologic, and psychiatric evaluations, and provide body fluid samples that are linked to clinical information. Upon their demise, study participants become organ donors. This program has supplied clinical information, tissue, and fluid samples to over 70 qualified AIDS researchers across America, Europe and Australia. In fulfilling its resource mission, the MHBB functions as part of the National NeuroAIDS Tissue Consortium (NNTC). MHBB provides a means by which people living with HIV can be engaged in the struggle to improve our knowledge about HIV infection and the damage it causes to the body. human immunodeficiency virus, aids, body fluid, organ, clinical information, tissue, brain, liver disease, liver disorder, aids pathogenesis, clinical data is listed by: One Mind Biospecimen Bank Listing
is related to: One Mind Biospecimen Bank Listing
is related to: National NeuroAIDS Tissue Consortium
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
Human immunodeficiency virus, AIDS, Liver disease, Liver disorder NIH nlx_19658 http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Manhattan%20HIV%20Brain%20Bank SCR_010520 2026-09-12 12:57:20 1
Brain Observatory
 
Resource Report
Resource Website
Brain Observatory (RRID:SCR_010641) Brain Observatory biospecimen repository, data or information resource, material storage repository, portal, service resource, storage service resource, topical portal, video resource Formerly a topical portal studying the brain which collected and imaged 1000 human brains, the Brain Observatory has partnered with the Institute for Brain and Society to build virtual laboratories that will feed directly into the database of images and knowledge created in the context of the Human Brain Library. The Brain Observatory will also host exhibits, conferences, and events aimed at promoting a heightened awareness of brain research and how its results can benefit personal brain fitness and mental health. human, brain, visual cortex, neuroimaging has parent organization: University of California San Diego School of Medicine; California; USA Human immunodeficiency virus, NeuroAIDS, AIDS, Amnesia NIMH ;
NSF ;
The Dana Foundation ;
NEI
Public nlx_69083 http://thebrainobservatory.ucsd.edu/ SCR_010641 The Brain Observatory 2026-09-12 12:57:21 0
Alkermes
 
Resource Report
Resource Website
Alkermes (RRID:SCR_010497) ALKS commercial organization A biopharmaceutical company that focuses on central nervous system (CNS) diseases. The company is the result of a merger between Alkermes, Inc. and Elan Drug Technologies (EDT), the former drug formulation and manufacturing division of Elan Corporation, plc. The company is headquartered in Dublin, and has an R&D center in Waltham, Massachusetts and manufacturing facilities in Athlone, Ireland; Gainesville, Georgia; and Wilmington, Ohio. Alkermes has more than 20 commercial drug products and candidates that address serious and chronic diseases such as addiction, schizophrenia, diabetes and depression. Among these, five products are primary to the company: risperidone Long-Acting Injection (Risperdal Consta) for schizophrenia and bipolar 1 disorder, paliperidone palmitate (Invega Sustenna in the U.S., Xeplion in Europe) for schizophrenia, 4-aminopyridine (Ampyra in the U.S., Fampyra in Europe) to improve walking in patients with multiple sclerosis, naltrexone for extended-release injectable suspension (Vivitrol) for alcohol and opioid dependence, and exenatide extended-release for injectable suspension (Bydureon) for the treatment of type 2 diabetes. Bydureon is a once-weekly, long-acting form of the drug exenatide (Byetta) and was developed through a partnership between Amylin, Alkermes and Eli Lilly. It is approved in Europe and the U.S. (Wikipedia) central nervous system, disease, biopharmaceutical company, drug Central nervous system disease, Addiction, Schizophrenia, Diabetes, Depressive Disorder, Bipolar Disorder, Multiple Sclerosis, Alcohol dependence, Opioid dependence, Type 1 diabetes, Type 2 diabetes ISNI: 0000 0004 0384 2510, nlx_158068, Wikidata: Q4727688, grid.472773.2 https://ror.org/05sa44m96 SCR_010497 Alkermes plc 2026-09-12 12:57:20 0
Databrary
 
Resource Report
Resource Website
10+ mentions
Databrary (RRID:SCR_010471) Databrary data or information resource, data repository, database, portal, project portal, service resource, software repository, software resource, storage service resource Project aims to promote data sharing, archiving, and reuse among researchers who study human development. Focuses on creating tools for scientists to store, manage, preserve, analyze and share video and related data. behavior, development, data, sharing, audio track, video is listed by: re3data.org
is related to: Datavyu
is related to: Datavyu
has parent organization: New York University; New York; USA
has parent organization: Pennsylvania State University
NICHD U01 HD076595;
NSF BCS-1238599
Restricted nlx_157733, r3d100011023 https://github.com/databrary SCR_010471 2026-09-12 12:57:19 17
miRTar
 
Resource Report
Resource Website
50+ mentions
miRTar (RRID:SCR_010851) miRTar analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource An integrated web server for identifying miRNA-target interactions in human. The tool enables biologists easily to identify the biological functions and regulatory relationships between a group of known/putative miRNAs and protein coding genes. It also provides perspective of information on the miRNA targets on alternatively spliced transcripts. is listed by: OMICtools
has parent organization: National Chiao Tung University; Hsinchu; Taiwan
OMICS_00410 SCR_010851 MicroRNA Target prediction 2026-09-12 12:57:24 55
BCmicrO
 
Resource Report
Resource Website
1+ mentions
BCmicrO (RRID:SCR_010838) BCmicrO software resource, web application A Bayesian decision fusion algorithm for microRNA target prediction that combines the prediction of TargetScan, miRanda, PicTar, mirTarget, PITA, and DianamicroT. Users enter a Ref_seq ID for a query target gene and select a miRNA, which BCmicrO will use in its predictive algorithm. The prediction results can then be downloaded. mirna, microrna, bayesian, decision fusion algorithm, computational target prediction algorithm, web application, is listed by: OMICtools
has parent organization: University of Texas at San Antonio; Texas; USA
Public OMICS_00393 SCR_010838 2026-09-12 12:57:24 8
Medical Biobank
 
Resource Report
Resource Website
Medical Biobank (RRID:SCR_010748) Medical Biobank biospecimen repository, material storage repository, service resource, storage service resource A biobank created from a cross-sectional population of a town in Sweden. The Medical Biobank is mainly based on three cohorts: The V��sterbotten intervention cohort, the MONICA-cohort, and the Mammary screening cohort. These sub-cohorts together are named Northern Sweden Health and Disease Study Cohort (North Health). These sub-cohorts together is named Northern Sweden Health and Disease Study Cohort (North Health). Originally, the V��sterbotten Intervention program (VIP) is a long-term project intended for health promotion of the population of V��sterbotten. All individuals 40, 50 and 60 years of age in the population of the county are invited for screening (approx. 254.000 inhabitants). They are asked to complete a questionnaire concerning various lifestyle factors including diet. They are also asked to donate a separate blood sample to the Medical Biobank for freeze storage for later research purposes. The project started in 1985 and the cohort covered in December 2002, 74,000 individuals, of whom 67,000 had donated blood samples. The material is supplemented with population based samples from a local mammary screening (44,000 sampling occasions, 25,700 unique individuals) and from the Northern Sweden MONICA Project (11,500 sampling occasions, 7,500 unique individuals). The total cohort contains at the moment 85.000 unique individuals with 130.000 sampling occasions. The VIP and MONICA cohorts are population based and the mammary screening cohort are nearly population based. Follow-up: * For the VIP-cohort a second sample (and questionnaire) is collected with a 10-year interval of the individuals within the cohort. * Repeated sampling was performed in the MONICA project in 1999 on individuals participating in 1986, 1990, and 1994. * From 1997 repeated screening has started within the mammary screening program with sampling every second year, in the age group 50-69 years within the county. Biobank content: * Life-Style Questionnaire: Every attending subject is asked to answer a questionnaire, which in the VIP and MONICA-projects includes questions about education, occupation/working conditions, daily habits including smoking, diet, etc and in the mammary screening cohort on reproductive conditions. The dietary questionnaire has been validated twice. The data from the questionnaires, as well as from results from the biobank, are kept in a database for future research purposes. The questionnaires in the VIP and the MONICA project are optically read. * Measurements: Blood Pressure, Anthropometry, Glucose Tolerance Test, Blood Lipids * Blood Samples: The attendants are asked for their willingness to donate a sample of 20-ml whole blood for future analyses. The sample is taken after 4 hours of fasting or in the morning after an over night fasting (most samples) in the VIP and MONICA cohorts. The 20-ml sample is divided into 10 subsamples consisting of 6 plasma, 2 leukocyte (buffy coat) and 2 erythrocyte samples. All material is frozen at -80 degrees C. The organization of the bank is elaborated with specially trained staff and an organization of transport-, storage- and security facilities. For DNA handling a specialized laboratory has been built up. * End-points: Mortality, Cancer events, Cardiovascular events, Other morbidity, Other registry-based follow-up * Registries: At regular intervals the cohort is scanned for incident myocardial infarctions (MI) and stroke utilizing the Northern Sweden MONICA registry and for cancer using the regional cancer registry. In the future the same procedure will be applied also on other registries e.g. diabetes, osteoporosis, dementia. lifestyle, diet, adult, questionnaire is listed by: One Mind Biospecimen Bank Listing
is related to: Swedish National Biobank Program
has parent organization: Umea University; Umea; Sweden
General adult population, (40 50 and 60 years of age), Adult, Middle adult human, Aging Public: The Medical Biobank has been positioned as a national and international resource for scientific research. All applications must be: Approved by the Board of Experts, Research Ethics Committee and Medical Biobank. nlx_99793 SCR_010748 Biobank of Northern Sweden 2026-09-12 12:57:22 0
Integra Life Sciences
 
Resource Report
Resource Website
100+ mentions
Integra Life Sciences (RRID:SCR_010741) commercial organization Commercial tissue bank for human tissues. life science, organization, commercial, surgical instrument, neurosurgery Commercial grid.481865.6, nlx_97702 https://ror.org/04t8qhn97 SCR_010741 Integra 2026-09-12 12:57:22 385
Picky
 
Resource Report
Resource Website
10+ mentions
Picky (RRID:SCR_010963) Picky software resource A software tool for selecting optimal oligonucleotides (oligos) that allows the rapid and efficient determination of gene-specific oligos based on given gene sets, and can be used for large, complex genomes such as human, mouse, or maize. is listed by: OMICtools
has parent organization: Iowa State University; Iowa; USA
NSF DBI0850195 PMID:15180932
PMID:19849862
PMID:20406469
Free, Public, Acknowledgement requested OMICS_00833 SCR_010963 Picky: Optimal Oligonucleotide Design and Analysis 2026-09-12 12:57:27 39
oPOSSUM
 
Resource Report
Resource Website
100+ mentions
oPOSSUM (RRID:SCR_010884) oPOSSUM analysis service resource, data analysis service, production service resource, service resource, software resource A web-based system for the detection of over-represented conserved transcription factor binding sites and binding site combinations in sets of genes or sequences. transcription factor binding site is listed by: OMICtools PMID:22973536
PMID:17576675
PMID:15933209
Acknowledgement requested OMICS_00488 SCR_010884 oPOSSUM-3 2026-09-12 12:57:25 101
French National Authority for Health
 
Resource Report
Resource Website
French National Authority for Health (RRID:SCR_011238) HAS institution An independent public scientific authority responsible for promoting the quality and safety of patient care and to guarantee equity within the healthcare system. HAS activities are diverse ranging from assessment of drugs, medical devices, and procedures to publication of guidelines to accreditation of healthcare organisations and certification of doctors. All are based on rigorously acquired scientific expertise. Training in quality issues and information provision are also key components of its work program. is related to: GetReal nlx_158514 SCR_011238 Haute Autorité de Santé, Haute Autorite de Sante 2026-09-12 12:57:31 0
HPID - Human Protein Interaction database
 
Resource Report
Resource Website
1+ mentions
HPID - Human Protein Interaction database (RRID:SCR_007724) HPID data or information resource, data repository, database, service resource, storage service resource Database that provides human protein interaction information and integrated interaction and also finds proteins from databases that can potentially react with proteins submitted by users. The human protein interaction information was pre-computed by a statistical method from existing structural and experimental data, while the integrated human protein interactions are derived from BIND, DIP and HPRD. A score composed of three parts is assigned to the predicted interaction data, and those interactions with high scores were found reliable. HPID allows the user to use the protein IDs in EMBL, Ensembl, MIM, RefSeq, HPRD and NCBI to search protein interactions of interest. A set of web-based software tools has also been developed so that users can visualize and analyze protein interaction networks. human protein, protein, interaction, protein superfamily, yeast, visualize, analyze, protein interaction network has parent organization: Inha University; Incheon; South Korea Ministry of Information and Communication of Korea IMT2000-C3-4 PMID:15117749 nif-0000-02984 http://www.hpid.org SCR_007724 2026-09-12 12:56:57 2
Alzheimer's Australia: Living with Dementia
 
Resource Report
Resource Website
Alzheimer's Australia: Living with Dementia (RRID:SCR_008015) data or information resource, disease-related portal, narrative resource, portal, service resource, topical portal, training material, training resource A website which provides in-depth fact sheets on aspects of dementia and dementia care. It provides information on member organizations in each state, support and respite services as well as counseling and education available through Alzheimer's Australia. This organization's vision is for a society committed to the prevention of dementia, while valuing and supporting people living with dementia. Alzheimer's Australia manages a wide range of innovative National Programs which provide information, support, counseling, training and education to people with dementia, their families and carers as well as to professionals working in the dementia field. education, events, family, alzheimers, counseling, dementia, healthcare, memory loss, services, short course, support Department of Health Australian Government ;
J.O. and J.R. Wicking Trust ;
Pfizer Australia ;
Hazel Hawke Research and Care Fund ;
Bupa Care Services ;
Australia and New Zealand Banking Group Limited ;
Eli Lily ;
Novartis Australia ;
Workplace Giving Companies
Public nif-0000-10147 SCR_008015 Alzheimer's Australia 2026-09-12 12:56:58 0
T1DBase
 
Resource Report
Resource Website
100+ mentions
T1DBase (RRID:SCR_007959) data or information resource, data repository, database, resource, service resource, storage service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 26,2019. In October 2016, T1DBase has merged with its sister site ImmunoBase (https://immunobase.org). Documented on March 2020, ImmunoBase ownership has been transferred to Open Targets (https://www.opentargets.org). Results for all studies can be explored using Open Targets Genetics (https://genetics.opentargets.org). Database focused on genetics and genomics of type 1 diabetes susceptibility providing a curated and integrated set of datasets and tools, across multiple species, to support and promote research in this area. The current data scope includes annotated genomic sequences for suspected T1D susceptibility regions; genetic data; microarray data; and global datasets, generally from the literature, that are useful for genetics and systems biology studies. The site also includes software tools for analyzing the data. genetics, beta cell, gene, variant, region, genomics, gene expression, genome-wide association study, data analysis service, bio.tools is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is listed by: NIDDK Information Network (dkNET)
is listed by: Debian
is listed by: bio.tools
is related to: dkCOIN
has parent organization: University of Cambridge; Cambridge; United Kingdom
Type 1 diabetes. Diabetes Wellcome Trust ;
NIDDK ;
Juvenile Diabetes Research Foundation
PMID:20937630 THIS RESOURCE IS NO LONGER IN SERVICE. nif-0000-03531, biotools:t1dbase https://bio.tools/t1dbase SCR_007959 T1DBase - Type 1 Diabetes Database 2026-09-12 12:56:58 147
Laboratory of Molecular Neuroscience, University of Oslo
 
Resource Report
Resource Website
1+ mentions
Laboratory of Molecular Neuroscience, University of Oslo (RRID:SCR_008097) UiO LMN data or information resource, portal, topical portal A laboratory that investigates the molecular mechanisms involved in the development of acute and chronic neurodegenerative disease, with a focus on the role of glutamate excitotoxicity. It aims at unraveling the molecular basis for cell death and edema development in stroke, and explores the pathophysiology of Alzheimer's disease and temporal lobe epilepsy. The main objective of the LMN is to advance understanding of the role of glutamate, as a transmitter substance in the normal brain and as a mediator of excitotoxicity in pathological conditions such as stroke. To this end the LMN employs several vital and nonvital imaging techniques. Model systems includes organotypic slice cultures and transgenic animals. An important focus of the LMN is to explore the role of DNA damage and repair in the pathogenesis of neurodegenerative disease. LMN is also engaged in research on molecular mechanism underlying brain edema, epilepsy, and Alzheimer's disease. epilepsy, excitotoxicity, acute, alzheimer's disease, brain, brain edema, cell death, chronic, damage, dna, glutamate, imaging, model systems, molecular, molecular mechanism, neurodegenerative disease, neuroprotective, neuroscience, repair, stroke, transmitter has parent organization: University of Oslo; Oslo; Norway nif-0000-11675 SCR_008097 University of Oslo LMN 2026-09-12 12:57:00 2
Atlas of Medical Parasitology
 
Resource Report
Resource Website
Atlas of Medical Parasitology (RRID:SCR_008163) A.M.P., AMP data or information resource, data repository, database, image repository, service resource, storage service resource Database of images on medical parasitology created to provide educational materials for medical students primarily, but professional workers in medical or paramedical fields may also refer to this site covering the significant parasites in the world. Each database of protozoans, nematodes, trematodes, cestodes and arthropods contains information on the morphology, life cycle, geographical distribution, symptoms, prevention, etc. Users who wish to contribute can send the editor unpublished images of human parasites (microscopical, clinical, radiological or epidemiological aspects of human parasitic infections) by mail or e-mail. Pathology specimens (slide, samples) are welcome too. The A.M.P. received the citation of reliable sources such as Parasitology today and The Lancet, and is now listed in the Internet Resources on Specific Infectious Diseases Topics of the Mandell, Douglas and Bennets Principles and Practice of Infectious Diseases Fifth Edition.
This website was established with a great contribution of the PROJECT COLLABORATORS and many contributors of The Korean Society for Parasitology.
epidemiological, clinical, disease, human, infection, medical, microscopical, parasite, parasitic, parasitology, pathology, radiological, specimen, morphology, life cycle, geographical distribution, symptom, prevention, human parasite, biospecimen repository, training material, image has parent organization: Chungbuk National University; Cheongju; South Korea Human parasitic infection Ministry of Health and Welfare - Republic of Korea ;
Korean Medical Research Information Center
The community can contribute to this resource nif-0000-21025 http://www.cdfound.to.it/_atlas.htm SCR_008163 Web Atlas of Medical Parasitology 2026-09-12 12:57:00 0
University of Texas at San Antonio Laboratory of Professor Brenda Claiborne
 
Resource Report
Resource Website
1+ mentions
University of Texas at San Antonio Laboratory of Professor Brenda Claiborne (RRID:SCR_008064) UTSA Claiborne Lab data or information resource, data set, laboratory portal, organization portal, portal The long-term goals of my research are to understand the relationship between neuronal structure and function, and to elucidate the factors that affect neuronal morphology and function over the lifespan of the mammal. Currently we are examining 1) the effects of synaptic activity on neuronal development; 2) the effects of estrogen on neuronal morphology and on learning and memory; and, 3) the effects of aging on neuronal structure and function. We have focused our efforts on single neurons in the hippocampal formation, a region that is critical for certain forms of learning and memory in rodents and humans. From the portal, you may click on a cell in your region of interest to see the complete database of cells from that region. You may also explore the Neuron Database: * Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons. (Raw data available) * Quantitative, three-dimensional analysis of granule cell dendrites in the rat dentate gyrus. * Dendritic Growth and Regression in Rat Dentate Granule Cells During Late Postnatal Development.(Raw data available) * A light and electron microscopic analysis of the mossy fibers of the rat dentate gyrus. neuronal, structure, synaptic activity, rodent, human, neuron, neuronal morphology, synapse, neuronal development, learning, memory, estrogen, hippocampus, hippocampal formation, mammal, cell has parent organization: University of Texas at San Antonio; Texas; USA Aging nif-0000-10481 SCR_008064 USTA Laboratory of Professor Brenda Claiborne 2026-09-12 12:56:59 1
ABX Guide
 
Resource Report
Resource Website
1+ mentions
ABX Guide (RRID:SCR_008214) ABX Guide continuing medical education, data or information resource, database, training resource Concise, clinically useful information for diagnosing, managing and treating infectious diseases in adults; however it does cover some pediatric topics including vaccines. It is designed for primary care providers and other non-infectious disease specialists as a tool that can be used at the point of care to assist in prescribing antibiotics. drug interaction, drug, evaluation, antibiotic, clinical, contraindication, diagnosis, disease, disease state, dosing, immunization, indication, infectious disease, literature review, pathogen, pharmacokinetics, side effect, treatment, vaccine, antibiotic, adult, pediatric, vaccine, point of care is related to: Johns Hopkins Point of Care Guides
is related to: Johns Hopkins University; Maryland; USA
Infectious disease Available for purchase nif-0000-21292 SCR_008214 Johns Hopkins ABX Guide, Johns Hopkins Antibiotic Guide 2026-09-12 12:57:01 4

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