Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
VarScan Resource Report Resource Website 1000+ mentions |
VarScan (RRID:SCR_006849) | VarScan, VarScan 2 | software application, software resource | Platform-independent, technology-independent software tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples. Given data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, and allele frequency. Given data for a tumor-normal pair, VarScan also determines the somatic status of each variant (Germline, Somatic, or LOH) by comparing read counts between samples. (entry from Genetic Analysis Software). | gene, genetic, genomic, java, illumina, solid, life/pgm, roche/454, next-generation sequencing, variant, mutation caller, exome, whole-genome, snp, copy number alteration, somatic mutation, subclonal mutation, mutation, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools is organization facet of: Washington University in St. Louis; Missouri; USA |
PMID:22300766 PMID:19542151 DOI:10.1101/gr.129684.111 |
Free, Available for download, Freely available | , nlx_154687, biotools:varscan, OMICS_00094 | http://varscan.sourceforge.net/, http://dkoboldt.github.io/varscan/, https://bio.tools/varscan, https://sources.debian.org/src/varscan/ | http://genome.wustl.edu/software/varscan, http://tvap.genome.wustl.edu/tools/varscan/ | SCR_006849 | Varscan2, VarScan - variant detection in massively parallel sequencing data, Varscan | 2026-09-12 01:02:36 | 1983 | ||||
|
LSP Resource Report The record is no longer available at this source. |
LSP (RRID:SCR_007059) | LSP | software application, software resource | Software application that is part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | SCR_007059 | Linkage Setup Program | 2026-09-12 01:02:36 | 0 | |||||||||
|
RTDT Resource Report Resource Website 10+ mentions |
RTDT (RRID:SCR_007336) | RTDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, matlab, c++ | is listed by: Genetic Analysis Software | nlx_154579 | SCR_007336 | Robust Transmission/Disequilibrium Test | 2026-09-12 01:02:37 | 17 | ||||||||
|
TKMAP Resource Report Resource Website |
TKMAP (RRID:SCR_007457) | TKMAP | software application, software resource | Software program for drawing genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, based on biotk which is based on tcl/tk | is listed by: Genetic Analysis Software | nlx_154026 | SCR_007457 | 2026-09-12 01:02:37 | 0 | |||||||||
|
FASTLINK Resource Report Resource Website 1+ mentions |
FASTLINK (RRID:SCR_007042) | software application, software resource | FASTLINK is significantly modified and improved version of main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. | Genetic linkage analysis, map genes, find location, disease, genes |
is listed by: Genetic Analysis Software is related to: LINKAGE |
nlx_154428 | https://www.jurgott.org/linkage/LinkagePC.html | SCR_007042 | FASTLINK | 2026-09-12 01:02:36 | 2 | ||||||||
|
ET-TDT Resource Report Resource Website |
ET-TDT (RRID:SCR_007657) | ET-TDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | nlx_154304 | SCR_007657 | Evolutionary Tree - Transmission Disequilibrium Test | 2026-09-12 01:02:37 | 0 | ||||||||
|
BEAM Resource Report Resource Website 500+ mentions |
BEAM (RRID:SCR_007258) | BEAM | software application, software resource | Software application that treats the disease-associated markers and their interactions via a bayesian partitioning model and computes, via Markov chain Monte Carlo, the posterior probability that each marker set is associated with the disease. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, linux, dos | is listed by: Genetic Analysis Software | nlx_154240 | SCR_007258 | Bayesian Epistasis Association Mapping | 2026-09-12 01:02:36 | 665 | ||||||||
|
LDSELECT Resource Report Resource Website 10+ mentions |
LDSELECT (RRID:SCR_007010) | LDSELECT | software application, software resource | Software program that analyzes patterns of linkage disequilibrium (LD) between polymorphic sites in a locus, and bins the SNPs on the basis of a threshold level of LD as measured by r2. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ld_select, nlx_154426 | https://bio.tools/ld_select | SCR_007010 | 2026-09-12 01:02:36 | 15 | |||||||
|
INTEGRAYEDMAP Resource Report Resource Website |
INTEGRAYEDMAP (RRID:SCR_007489) | INTEGRAYEDMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A web application and database schema for storing and interactively displaying genetic map data. | gene, genetic, genomic, ms-windows, (nt/2000/xp profession/), require either, oracle rdbms, or, mysql | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154099 | ftp://cggc.agtec.uga.edu/IntegratedMap/ | SCR_007489 | 2026-09-12 01:02:37 | 0 | |||||||
|
LDMAP Resource Report Resource Website 1+ mentions |
LDMAP (RRID:SCR_006308) | LDMAP | software application, software resource | Software program for constructing linkage disequilibrium (LD) maps. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, solaris | is listed by: Genetic Analysis Software | nlx_154425 | SCR_006308 | 2026-09-12 01:02:35 | 8 | |||||||||
|
ILLUMINUS Resource Report Resource Website |
ILLUMINUS (RRID:SCR_000388) | Illuminus | software application, software resource | A fast and accurate algorithm for assigning single nucleotide polymorphism (SNP) genotypes to microarray data from the Illumina BeadArray technology. | gene, genetic, genomic, c++, single nucleotide polymorphism, genotype, microarray, illumina beadarray, illumina |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:17846035 | Free, Available for download, Freely available | OMICS_00726, nlx_154408 | http://www.sanger.ac.uk/resources/software/illuminus/ | http://www.sanger.ac.uk/science/tools/illuminus | SCR_000388 | Illuminus: the genotype calling algorithm | 2026-09-12 01:02:23 | 0 | ||||
|
LDB/LDB+ Resource Report Resource Website |
LDB/LDB+ (RRID:SCR_000839) | LDB/LDB+ | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software application that integrate genetic linkage map and physical map (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, sunos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154413 | SCR_000839 | Location DataBase | 2026-09-12 01:02:24 | 0 | |||||||
|
HAP 1 Resource Report Resource Website 1+ mentions |
HAP 1 (RRID:SCR_000837) | HAP 1 | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154371 | SCR_000837 | haplotype resolution using imperfect phylogeny | 2026-09-12 01:02:24 | 3 | |||||||
|
DCHIP LINKAGE Resource Report Resource Website |
DCHIP LINKAGE (RRID:SCR_000835) | DCHIP LINKAGE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154280 | SCR_000835 | 2026-09-12 01:02:24 | 0 | ||||||||
|
FLOSS Resource Report Resource Website |
FLOSS (RRID:SCR_000836) | FLOSS | software application, software resource | Software application that performs ordered subset analysis using MERLIN's ouput .lod file created with the --perFamily option. Ordered subset analysis uses covariate information to identify a more homogenous subset of families for linkage analysis. The homogeneous subset of families does not need to be specified a priori, and the covariates can include environmental exposures, quantitative traits, or linkage scores at another locus in the genome. The evidence for linkage is evaluated with a permutation test. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:floss, nlx_154319 | https://bio.tools/floss | SCR_000836 | FLexible Ordered SubSet analysis | 2026-09-12 01:02:24 | 0 | |||||||
|
POLYMORPHISM Resource Report Resource Website |
POLYMORPHISM (RRID:SCR_000828) | software application, software resource | Software application for calculating the heterozygosity, PIC, and LIC values for polymorphic markers (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154052 | SCR_000828 | 2026-09-12 01:02:24 | 0 | |||||||||
|
EDAC Resource Report Resource Website 1+ mentions |
EDAC (RRID:SCR_000829) | EDAC | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154078 | http://www.biostat.wustl.edu/~gc/cgi-bin/calcpwr.cgi | SCR_000829 | power calculator for Extremely Discordant And Concordant sibpairs | 2026-09-12 01:02:24 | 2 | ||||||
|
2LD Resource Report Resource Website |
2LD (RRID:SCR_000826) | 2LD | software application, software resource | Software program for calculating linkage disequilibrium (LD) measures between two polymorphic markers. | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | PMID:14871868 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154006 | http://www.mrc-epid.cam.ac.uk/Personal/jinghua.zhao/software.htm | SCR_000826 | 2026-09-12 01:02:24 | 0 | ||||||
|
SQTL Resource Report Resource Website |
SQTL (RRID:SCR_000827) | SQTL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, linux | is listed by: Genetic Analysis Software | Free, Available for download, Freely available | nlx_154032 | SCR_000827 | Semiparametric QTL mapping in general pedigrees | 2026-09-12 01:02:24 | 0 | |||||||
|
SOLAR Resource Report Resource Website 10+ mentions |
SOLAR (RRID:SCR_000850) | SOLAR | software application, software resource | A flexible and extensive software package for genetic variance components analysis, including linkage analysis, quantitative genetic analysis, and covariate screening. Operations are included for calculation of marker-specific or multipoint identity-by-descent (IBD) matrices in pedigrees of arbitrary size and complexity, and for linkage analysis of quantitative traits which may involve multiple loci (oligogenic analysis), dominance effects, and epistasis. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, c, c++, tcl, unix, (solaris 7-10/solaris x86 8-9/digital unix 4.0e/sg irix), linux, macos, ms-windows | is listed by: Genetic Analysis Software | nlx_154653 | http://www.sfbr.org/Departments/genetics_detail.aspx?p=37 | SCR_000850 | Sequential Oligogenic Linkage Analysis Routines | 2026-09-12 01:02:24 | 23 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
