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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Eukaryotic Pathogen Database Resources Resource Report Resource Website 10+ mentions |
Eukaryotic Pathogen Database Resources (RRID:SCR_004512) | EuPathDB, ApiDB | data access protocol, data or information resource, data repository, database, portal, service resource, software resource, storage service resource, topical portal, web service | EuPathDB integrates numerous database resources and multiple data types. The phylum Apicomplexa comprises veterinary and medically important parasitic protozoa including human pathogenic species of genera Cryptosporidium, Plasmodium and Toxoplasma. ApiDB serves not only as database but unifies access to three major existing individual organism databases, PlasmoDB.org, ToxoDB.org and CryptoDB.org, and integrates these databases with data available from additional sources. Through ApiDB site, users may pose queries and search all available apicomplexan data and tools, or they may visit individual component organism databases. EuPathDB Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Diseases is a portal for accessing genomic-scale datasets associated with eukaryotic pathogens. | Data, Apicomplexa, parasitic, protozoa, Cryptosporidium, Plasmodium, Toxoplasma, database, pathogen, dataset, FASEB list |
is listed by: NIH Data Sharing Repositories is related to: ApiDots is related to: NIH Data Sharing Repositories is related to: AmoebaDB is related to: MicrobiomeDB has parent organization: University of Georgia; Georgia; USA is parent organization of: FungiDB is parent organization of: TriTrypDB is parent organization of: PlasmoDB is parent organization of: ApiDB ToxoDB is parent organization of: ApiDB CryptoDB |
malaria, kala-azar, african sleeping sickness, chagas disease, aids-related, aids | Bill and Melinda Gates Foundation ; Wellcome Trust ; NIAID |
PMID:19914931 PMID:17098930 |
nlx_49652, r3d100011557 | http://ApiDB.org, https://doi.org/10.17616/R3X06F | SCR_004512 | SciCrunch Registry | EuPath, Apicomplexan Database Resources, Eukaryotic Pathogen Genome Database, EuPathDB, Eukaryotic Pathogen Database Resources, ApiDB, Apicomplexan Database | 2026-10-31 12:13:56 | 39 | ||||
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Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis Resource Report Resource Website 50+ mentions |
Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis (RRID:SCR_002676) | CAMERA | analysis service resource, data analysis service, data or information resource, data repository, organization portal, portal, production service resource, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016; however, the URL provides links to associated projects and data. A suite of data query, download, upload, analysis and sharing tools serving the needs of the microbial ecology research community, and other scientists using metagenomics data. | ecology, energy, environment, gene, analysis, bioinformatics, biological, biology, community, cyberinfrastructure, data, dna, genome, genomics, health care, map, marine, metadata, metagenomic, microbial, microbiology, molecular biology, organism, research, scientific, sequence, sequencing, software, tool, training, viral |
is listed by: OMICtools is related to: VIROME has parent organization: University of California at San Diego; California; USA |
Gordon and Betty Moore Foundation | PMID:21045053 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_011924, OMICS_01476, nif-0000-23292 | SCR_002676 | SciCrunch Registry | 2026-10-31 12:13:10 | 83 | ||||||
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The Immunology Database and Analysis Portal (ImmPort) Resource Report Resource Website 1000+ mentions |
The Immunology Database and Analysis Portal (ImmPort) (RRID:SCR_012804) | ImmPort | controlled vocabulary, data or information resource, data repository, database, disease-related portal, ontology, portal, service resource, storage service resource, topical portal | Data sharing repository of clinical trials, associated mechanistic studies, and other basic and applied immunology research programs. Platform to store, analyze, and exchange datasets for immune mediated diseases. Data supplied by NIAID/DAIT funded investigators and genomic, proteomic, and other data relevant to research of these programs extracted from public databases. Provides data analysis tools and immunology focused ontology to advance research in basic and clinical immunology. | immunology, basic, clinical, data, share, store, analyze, exchange, dataset, immune, mediated, disease, analysis, tool, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NIDDK Research Resources is affiliated with: Cytokine Registry is related to: MetaCyto is related to: The 10000 Immunomes is related to: NIAID |
Immune mediated disease | DAIT ; NIAID ; NIAID HHSN266200400076C; NIAID HHSN272201200028C; NIH |
PMID:24791905 | nlx_152691, r3d100012529 | http://www.immport.org/immport-open/public/home/home, http://www.immport.org/ | http://www.immport.org | SCR_012804 | SciCrunch Registry | Immunology Data and Analysis Portal, ImmPort system, ImmPort, Immunology Database and Analysis Portal | 2026-10-31 12:15:47 | 1383 | |||
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Inorganic Crystal Structure Database (ICSD) Resource Report Resource Website 10+ mentions |
Inorganic Crystal Structure Database (ICSD) (RRID:SCR_017429) | ICSD | data or information resource, data repository, database, service resource, storage service resource | Database for completely identified inorganic crystal structures. Collection of known inorganic crystal structures published since 1913, including their atomic coordinates. Includes only data which have passed thorough quality checks. Tool for materials research. | Inorganic, crystal, structure, data, atomic, coordinate, quality, FIZ Karlsruhe — Leibniz Institute for Information Infrastructure |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Restricted | r3d100010085 | http://www2.fiz-karlsruhe.de/icsd_home.html, https://doi.org/10.17616/R3GW2V | SCR_017429 | SciCrunch Registry | Inorganic Crystal Structure Database, Inorganic Crystal Structure Database (ICSD), ICSD | 2026-10-31 12:16:51 | 11 | ||||||
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NIH Figshare Archive Resource Report Resource Website 1+ mentions |
NIH Figshare Archive (RRID:SCR_017580) | NIH Figshare | data or information resource, data repository, database, service resource, storage service resource | Repository to make datasets resulting from NIH funded research more accessible, citable, shareable, and discoverable. Data submitted will be reviewed to ensure there is no personally identifiable information in data and metadata prior to being published and in line with FAIR -Findable, Accessible, Interoperable, and Reusable principles. Data published on Figshare is assigned persistent, citable DOI (Digital Object Identifier) and is discoverable in Google, Google Scholar, Google Dataset Search, and more.Complited on July,2020. Researches can continue to share NIH funded data and other research product on figshare.com. | Respository, data, NIH funded, data set, FAIR |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: FigShare is related to: FigsharePlus |
NIH | Restricted | SCR_017580 | SciCrunch Registry | NIH, Figshare, Fig Share, NIH Figshare, NIH Fig share, National Institute of Health | 2026-10-31 12:16:53 | 9 | |||||||
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Swedish Twin Registry Resource Report Resource Website 10+ mentions |
Swedish Twin Registry (RRID:SCR_017478) | data or information resource, data repository, database, service resource, storage service resource | Registry contains information about twin pairs for which zygosity is known, both mono- and dizygotic pairs. Registry covers older, middle, and younger cohorts. There are approximately 30 projects ongoing based on data from this registry. | Twin, registry, zygosity, monozygotic, dizygotic, pair, data | has parent organization: Karolinska Institute; Stockholm; Sweden | Free, Freely available | SCR_017478 | SciCrunch Registry | 2026-10-31 12:16:52 | 11 | ||||||||||
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Clowder Resource Report Resource Website |
Clowder (RRID:SCR_017599) | data management software, data repository, service resource, software application, software resource, storage service resource | Web based data management system that allows users to share, annotate, organize and analyze large collections of datasets. Software tool for creating some metadata about software tools automatically. Open source data management for long tail data. Provides support for extensible metadata annotation and distributed analytics for automatic curation of uploaded data. Open source software that can be customized and deployed on your own cloud. | Share, annotate, organize, analyze, metadata, long, tail, data, management, custom | has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA | Restricted | https://github.com/clowder-framework | SCR_017599 | SciCrunch Registry | 2026-10-31 12:16:53 | 0 | |||||||||
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Mousebytes Resource Report Resource Website 1+ mentions |
Mousebytes (RRID:SCR_017904) | data or information resource, data repository, database, service resource, storage service resource | Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available. | Data, mouse, cognition, imaging, genomics, integration, bio.tools, OpenBehavior |
is listed by: Debian is listed by: bio.tools is listed by: OpenBehavior has parent organization: Western University; Ontario; Canada |
Alzheimer’s Society of Canada ; Brain Canada ; Canadian First Research Excellence Fund (BrainsCAN) ; Canadian Institute of Health Research ; NSERC ; Weston Brain Institute (Canada) |
PMID:31825307 | Free, Freely available | SCR_021549, SCR_021598, r3d100013886, biotools:Mousebytes | https://bio.tools/MouseBytes, https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/, https://doi.org/10.17616/R31NJN7I | SCR_017904 | SciCrunch Registry | MouseBytes | 2026-10-31 12:16:55 | 4 | |||||
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SARS-CoV-2-Sequences Resource Report Resource Website 10+ mentions |
SARS-CoV-2-Sequences (RRID:SCR_018319) | data or information resource, data repository, data set, service resource, storage service resource | Collection of SARS-CoV-2 sequences currently available in GenBank genetic sequence database and Sequence Read Archive. Updated as additional sequences are released. | SARS-CoV-2, SARS coronavirus, SARS-CoV infection, Coronavirus, data, SARS-CoV-2 sequence collection, nucleotide, genome, Betacoronavirus, protein |
works with: GenBank works with: NCBI Sequence Read Archive (SRA) |
COVID-19 | The Federal Government | Free, Available for download, Freely available | SCR_018319 | SciCrunch Registry | Severe Acute Respiratory Syndrome CoronaVirus 2 Sequences | 2026-10-31 12:17:00 | 37 | |||||||
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COVID-19 Crowd Generated Gene and Drug Set Library Resource Report Resource Website 1+ mentions |
COVID-19 Crowd Generated Gene and Drug Set Library (RRID:SCR_018252) | data access protocol, data or information resource, data repository, database, service resource, software resource, storage service resource, web service | Software tool as interface to submit, serve, and analyze COVID19 related gene and drug sets. Collection of gene and drug sets related to COVID-19 research contributed by community. | COVID-19 data collection, gene collection, drug set collection, data, COVID-19 | has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA | COVID-19, COVID19 | Free, Freely available | https://github.com/MaayanLab/covid19_crowd_library | SCR_018252 | SciCrunch Registry | 2026-10-31 12:16:59 | 4 | ||||||||
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PhonBank Resource Report Resource Website 1+ mentions |
PhonBank (RRID:SCR_016312) | data repository, service resource, storage service resource | Database for study of early phonological development using Phon program. Child phonology component of TalkBank system. | Data, early, phonological, development, Phon, program, child |
is recommended by: National Library of Medicine is related to: TalkBank |
NICHD R01 HD051698 | Free, Freely available | SCR_016312 | SciCrunch Registry | 2026-10-31 12:16:44 | 2 | |||||||||
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MGnify Resource Report Resource Website 50+ mentions |
MGnify (RRID:SCR_016429) | data or information resource, data repository, portal, service resource, storage service resource | Portal for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. Provides functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive (ENA).Microbiome analysis resource in 2020. | analysis, exploration, metagenomic, metatranscriptomic, amplicon, assembly, data, sequence, ENA, microbial, population, environment, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) |
EMBL ; EU Seventh Framework Programme for Research MICROB3; InnovateUK 102513; Research Councils UK (RCUK) ; the Biotechnology and Biological Sciences Research Council (BBSRC) BBM0117551; the Biotechnology and Biological Sciences Research Council (BBSRC) BBN0183541; the Biotechnology and Biological Sciences Research Council BBI02612X1; the Biotechnology and Biological Sciences Research Council BBM0117551; the European Commission within the Research Infrastructures programme of Horizon 2020 676559 |
PMID:31696235 | Free, Freely available, Training online available | r3d100011192, biotools:MGnify | https://bio.tools/MGnify, https://doi.org/10.17616/R34W68 | SCR_016429 | SciCrunch Registry | , MGnify, EBI Metagenomics | 2026-10-31 12:16:43 | 74 | |||||
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hfoGUI Resource Report Resource Website 1+ mentions |
hfoGUI (RRID:SCR_016726) | hfoGUI | data analysis software, data processing software, data visualization software, signal processing software, software application, software repository, software resource | Graphical user interface to visualize EEG data. The applications can vary from scoring High Frequency Oscillations, to observing Theta and Gamma Synchrony. | graphical, user, interface, python, processing, data, EEG, LFP, frequency, oscillation | Alzheimer’s Association 2015-NIRG-341570; NIA R01 AG050425 |
Free, Available for download, Freely available | SCR_016726 | SciCrunch Registry | hfoGraphical User Interface | 2026-10-31 12:16:41 | 1 | ||||||||
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Leginon Resource Report Resource Website 10+ mentions |
Leginon (RRID:SCR_016731) | data acquisition software, data or information resource, data processing software, data repository, image acquisition software, portal, service resource, software application, software resource, storage service resource | System designed for automated collection of images from a transmission electron microscope. | automated, collection, acquisition, data, image, electron, microscope |
uses: Python Programming Language has parent organization: Scripps Research Institute |
NCRR RR17573; NIGMS GM61939; NSF DBI0352386; NSF DBI9730056; NSF DBI9904547 |
PMID:15890530 | Free, Available for download, Freely available, Registration suggested | SCR_016731 | SciCrunch Registry | 2026-10-31 12:16:41 | 45 | ||||||||
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UK Biobank Resource Report Resource Website 1000+ mentions |
UK Biobank (RRID:SCR_012815) | biobank, material storage repository, service resource, storage service resource | Biobank provides data collected at Assessment Center and via online questionnaires on participants aged 40-69 years recruited throughout United Kingdom and provides summary information to improve prevention, diagnosis and treatment of serious and life threatening illnesses. | Data, collected, United Kingdom, prevention, diagnosis, treatment, illness, questionnaire, blood, urine, saliva, cognitive function, psychological status, hearing test, interview, operation, medication, blood pressure, body measurementdie |
is listed by: One Mind Biospecimen Bank Listing is related to: AstraZeneca PheWAS Portal |
cancer, heart diseases, stroke, diabetes, arthritis, osteoporosis, eye disorders, depression, dementia. | MRC ; Scottish Government ; UK Department of Health ; Wellcome Trust ; Welsh Assembly Government |
grid.421945.f, nlx_95741, ISNI: 0000 0004 0396 0496, Wikidata: Q7864819 | https://ror.org/02frzq211 | SCR_012815 | SciCrunch Registry | 2026-10-31 12:22:34 | 3905 | |||||||
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Cerebellar Platform Resource Report Resource Website 1+ mentions |
Cerebellar Platform (RRID:SCR_001700) | Cerebellar Platform | software repository, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented January 13, 2022. Digital research archive for cerebellar research including mini-reviews of contemporary cerebellar research, list of papers and mathematical models for cerebellar operation. | electrophysiology, function, analysis, cerebellar, data, imaging, mathematical, model, molecular biology, paper, plasticity, program, review, script, structure, theory, book, cerebellum |
is used by: NIF Data Federation is related to: Integrated Software has parent organization: RIKEN Brain Science Institute |
Japan Society for the Promotion of Science | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10193 | SCR_001700 | SciCrunch Registry | 2026-10-31 12:21:04 | 1 | |||||||
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Astrophysics Source Code Library Resource Report Resource Website 1+ mentions |
Astrophysics Source Code Library (RRID:SCR_017604) | ASCL | software repository, software resource | Registry for source codes of interest to astronomers and astrophysicists, including solar system astronomers, and lists codes that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. ASCL is indexed by SAO/NASA Astrophysics Data System (ADS) and Web of Science and is citable by using unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net . | Sorce, code, astronomer, astrophysicist, data, list, publication | Free, Freely available | SCR_017604 | SciCrunch Registry | 2026-10-31 12:21:32 | 2 | ||||||||||
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Gaussian-Copula Mutual Information (GCMI) Resource Report Resource Website 10+ mentions |
Gaussian-Copula Mutual Information (GCMI) (RRID:SCR_016450) | GCMI | data analysis software, data processing software, software application, software resource | Software package of functions for calculating mutual information and other information theoretic quantities using a parametric Gaussian copula. | gaussian, copula, parametric, equation, calculation, python, matlab, repository, statistic | European Research Council 646657; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/D01400X1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/J018929/1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/L027534/1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/M009742/1; Wellcome Trust 098433; Wellcome Trust 107802 |
Free, Available for download | SCR_016450 | SciCrunch Registry | gcmi : Gaussian-Copula Mutual Information, Gaussian-Copula Mutual Information | 2026-10-31 12:16:37 | 11 | ||||||||
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chronopolis Resource Report Resource Website |
chronopolis (RRID:SCR_003116) | Chronopolis | data repository, service resource, software repository, software resource, storage service resource | Services for the long-term preservation and curation of America's digital data - data of any type or size, with minimal requirements on the data provider. It has the capacity to preserve hundreds of terabytes of digital data and comprises several partner organizations that provide a wide range of services. The project leverages high-speed networks, mass-scale storage capabilities, and the expertise of the partners in order to provide a geographically distributed, heterogeneous, and highly redundant archive system. Features of the project include: * Three geographically distributed copies of the data * Curatorial audit reporting * Development of best practices for data packaging and sharing Chronopolis is available to anyone who wants to have their data preserved. Storage is based on a yearly, per-terabyte charge. The smallest unit available is one terabyte; collections smaller than this will be charged the one terabyte rate. | digital preservation |
is related to: Digital Asset Management System has parent organization: San Diego Supercomputer Center |
Library of Congress | Free, Freely available | nlx_156729 | https://library.ucsd.edu/chronopolis/ | SCR_003116 | SciCrunch Registry | 2026-10-31 12:13:18 | 0 | ||||||
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ARRS GoldMiner Resource Report Resource Website |
ARRS GoldMiner (RRID:SCR_013716) | data or information resource, image collection | An image repository that provides access to published, peer-reviewed medical images from biomedical journals. | image repository, medical image, peer review | PMID:17238591 | Public, Free | SCR_013716 | SciCrunch Registry | 2026-10-31 12:16:07 | 0 |
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