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http://purl.bioontology.org/ontology/APO
A structured controlled vocabulary for the phenotypes of Ascomycete fungi.
Proper citation: Ascomycete Phenotype Ontology (RRID:SCR_003254) Copy
http://purl.bioontology.org/ontology/MMO
An ontology designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.
Proper citation: Measurement Method Ontology (RRID:SCR_003373) Copy
http://code.google.com/p/bcgo-ontology/
An application ontology built for the Beta Cell Genomics database aiming to support database annotation, complicated semantic queries, and automated cell type classification. The ontology is developed using Basic Formal Ontology (BFO) as upper ontology, Ontology for Biomedical Investigations (OBI) as ontology framework and integrated subsets of multiple OBO Foundry (candidate) ontologies. Current the BCGO contains 2383 classes including terms referencing to 24 various OBO Foundry ontologies including CL, CLO, UBERON, GO, PRO, UO, etc.
Proper citation: Beta Cell Genomics Ontology (RRID:SCR_003259) Copy
http://purl.bioontology.org/ontology/IDOMAL
An application ontology to cover all aspects of malaria (clinical, epidemiological, biological, etc) as well as the intervention attempts to control it, extending the infectious disease ontology (IDO).
Proper citation: Malaria Ontology (RRID:SCR_003369) Copy
http://purl.bioontology.org/ontology/MAT
An ontology of minimal set of terms for anatomy.
Proper citation: Minimal Anatomical Terminology (RRID:SCR_003385) Copy
Ontology developed as an application ontology as part of the Biocode Commons project whose goal is to support the interoperability of biodiversity data, including data on museum collections, environmental and metagenomic samples, and ecological surveys. It includes consideration of the distinctions between individuals, organisms, voucher specimens, lots, and samples the relations between these entities, and processes governing the creation and use of samples. Within scope as well are properties including collector, location, time, storage environment, containers, institution, and collection identifiers.
Proper citation: Biological Collections Ontology (RRID:SCR_003262) Copy
http://www.bioontology.org/wiki/index.php/CARO:Main_Page
An ontology developed to facilitate interoperability between existing anatomy ontologies for different species, and to provide a template for building new anatomy ontologies.
Proper citation: Common Anatomy Reference Ontology (RRID:SCR_003296) Copy
http://purl.bioontology.org/ontology/CMO
An ontology designed to be used to standardize morphological and physiological measurement records generated from clinical and model organism research and health programs.
Proper citation: Clinical Measurement Ontology (RRID:SCR_003291) Copy
https://github.com/rsc-ontologies/rsc-cmo
An ontology that describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; preparing and separating material for further analysis, such as sample ionization, chromatography, and electrophoresis; and synthesizing materials, such as epitaxy and continuous vapor deposition. It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).
Proper citation: Chemical Methods Ontology (RRID:SCR_003286) Copy
http://purl.bioontology.org/ontology/FYPO
A formal ontology of phenotypes observed in fission yeast that is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource. Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.
Proper citation: Fission Yeast Phenotype Ontology (RRID:SCR_003315) Copy
https://www.labservis.com/en/cobas_8000_analyzer_series_e602
Immunochemistry analyzer as mid-volume throughput immunochemistry module that performs broad range of heterogeneous immunoassay tests using ElectroChemiLuminescence (ECL) technology. Offers Heterogeneous immunoassays, Throughput of up to 170 tests/hour, 25 reagent positions, Reagent cassette loading/unloading during standby, Carryover-free disposable tips, Clot and air bubble detection.
Proper citation: Roche: cobas e 602 analytical unit (RRID:SCR_026640) Copy
Platform to help scientists organize all biological knowledge into singular, unified resource that is searchable, accessible and capable of answering the most difficult questions in science. Used for bioinformatics analysis.
Proper citation: BioBox (RRID:SCR_026642) Copy
https://www.corelaboratory.abbott/us/en/offerings/brands/architect/architect-i2000SR.html
Analyzer offers maximum throughput of up to 200 tests per hour. Featuring load-up capacity of 135 samples with 35 priority and 100 routine areas. Has 25 refrigerated reagent positions. Designed for efficient and accurate analysis of various biological samples, including serum, plasma, and other bodily fluids.
Proper citation: Abbott: ARCHITECT i2000SR immunoassay analyzer (RRID:SCR_026638) Copy
Agilent Seahorse XF Pro analyzer measures and reports the oxygen consumption rate (OCR), proton efflux rate (PER) or extracellular acidification rate (ECAR), as well as ATP production rates of live cells in a 96-well format. This analyzer features excellent OCR precision at low rates, verified performance, optimized temperature control, and is automation enabled. The XF Pro analyzer is also equipped with advanced software, standardized workflows, and advanced data analytics available in the Agilent Seahorse Analytics software. These features greatly simplify the entire XF assay experience, from assay design to data QC and interpretation.
Proper citation: Agilent: Seahorse XF Pro Analyzer (RRID:SCR_026694) Copy
https://www.leica-microsystems.com/products/light-microscopes/p/dmi8/
Leica DMi8 microscope is an inverted light microscope, intended as a general microscope for routine examinations of biological specimens.
Proper citation: Leica: DMi8 Inverted Microscope (RRID:SCR_026672) Copy
https://azurebiosystems.com/products/azure-imaging-systems/azure-300/
Multichannel, multimodal imager, with visible fluorescence, visible light, and UV excitation channels. The system is fully upgradeable to fluorescent Western Blot Imaging System.
Proper citation: Azure Biosystems: Chemiluminescent Western Blot Imager Azure 300 (RRID:SCR_026671) Copy
https://www.singulargenomics.com/g4x
Ultra high-throughput, spatial sequencing platform, for integrated multiomic analysis of FFPE samples at subcellular resolution. Spatial sequencing platform capable of simultaneous direct RNA.
Proper citation: Singular Genomics: G4X Spatial Sequencer (RRID:SCR_026684) Copy
https://www.ddg-pharmfac.net/epijen/EpiJen/EpiJen.htm
Web server for multistep T cell epitope prediction. Also considers proteasome cleavage and TAP binding, therefore it is able to mimic the MHC binding machnism in real life. At present only HLA class I alleles are included in the prediction.
Proper citation: EpiJen (RRID:SCR_026689) Copy
Compact stereotaxic instrument designed for use with knock-out and transgenic mice. Instrument includes 100 micron, 3-axes left-hand manipulator arm, mouse snout clamp and tooth bar, dual-sided ear bars, and corner clamp probe holder. Stoelting’s Motorized Stereotaxic Manipulator Arms are designed for fast, accurate positioning during stereotaxic surgery. Motorized manipulator arms employ touchscreen display for easy-to-control movement of each axis. Manual movement is available anytime. Optional Drill feature available.
Proper citation: RWD Life Science: Standard Stereotaxic Holder (RRID:SCR_026656) Copy
3D-Hub-O specializes in production, manipulation and analysis of organoids from normal and tumor tissues. Physiological platform for research on living pathological tissues. Platform participates in knowledge transfer through customized training of specific organoid culture carried out by platform staff.
Proper citation: 3D-Hub-O platform (RRID:SCR_026655) Copy
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