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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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BD Biosciences: LSRFortessa X-20 Cell Analyzer Resource Report Resource Website 10+ mentions |
BD Biosciences: LSRFortessa X-20 Cell Analyzer (RRID:SCR_025285) | instrument resource | Cell analyzer system can be configured with up to 5 lasers to detect up to 20 parameters simultaneously. BD FACSDiva Software controls the setup, acquisition and analysis of flow cytometry data from the BD LSRFortessa Workstation. | Cell analyzer system, BD Bioscienes, |
uses: BD FACSDiva Software is related to: BD Biosciences: LSRFortessa Cell Analyzer |
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_025285.pdf | Model_Number_LSRFortessa_X-20 | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/bd_lsr_fortessax20_brochure.pdf | SCR_025285 | 2026-08-08 12:07:14 | 17 | ||||||||
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Beckman Coulter: Avanti J-30I High-Speed Centrifuge Resource Report Resource Website 1+ mentions |
Beckman Coulter: Avanti J-30I High-Speed Centrifuge (RRID:SCR_025297) | instrument resource | Refrigerated centrifuge that generates centrifugal forces required for wide variety of applications. Together with Beckman Coulter rotors are designed for use in this centrifuge. Centrifuge is microprocessor controlled, providing interactive operation. | Refrigerated centrifuge, high speed centrifuge, microprocessor controlled, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_025297.pdf | https://bec-techdocs-prod.s3.us-west-2.amazonaws.com/techdoc/files/ifu/en/J330I-IM-9AE.pdf?AWSAccessKeyId=ASIA2KJI7HMZ4W4WOSOR&Expires=1714509070&Signature=WAmUEqWmhAuZBdStFT1dxVnEECw%3D&x-amz-security-token=IQoJb3JpZ2luX2VjENz%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMiJIMEYCIQCxllVzSsalQuMymv%2BsKJ1lbqqEQn8ltQC3TnKU88A3IAIhAJQEiqgQTRcyukr3SYEu5bl5TO%2BFk5gSmmLbT0lhFGrNKvoCCDUQBBoMNzA5MjkyNDA3NjAzIgxHbyFzbnKb9KPQmtQq1wL9wj%2F5%2F8YTVHxG5rPxij6J8nDeQSvRSw4fvpiHzxVEL3APyGgU8mFE5gyQhVcOH8ZF50bBICgeb%2BRhmzox69Tevhz2VUNTqHzpiPGL3NJS5HAZUgWXMI3benwB7GmCW8L1ju3sp4oJHxSOGqlvaaSjC0CSNlcNpUoDk0VGNMRM%2FOEPGO1FHoX4jgQa13AVOIMojlKVpjOSTKdmcI6Eua8IJiCCW4BrpmNhFn7eZRlrmIhNSmkL19LloWJMx1xPjGjB2M2AB16YtF9VlwSlBy1HttB3EpsJC5AmnLo%2BDIPNKBeE3xcyHS%2BfnDI8bbC2u5kOTDy2kPjVeTUeD2GNSJmzbds9wz8YxnRdHOwVP8wrNtPIjPuUwx9%2BSyJmMXd9hejsP8nY7nGNaHp2QX09kylTNbNE6zwL5MXNQcWKBtznvDcurvZp9TrO2j8wfoo2IYUcq2z3MM0zMMSVxbEGOp0BK0l%2BFPJ49ktzgpB3E%2FGXJfUkUQs7uagLCW%2BFpHjlHWIejfjufxRKz1OPJV%2BbIKDOhNhJiXswwe%2BZHohGX6Oz%2BOfdrd5YWQm7pi6Iqyer6jNPh1tBQAJbf0p0biHSCX%2BpQhNfx8Z5qS9F%2Fz9S7B%2FRJIQnKiAeXthsr0YdIm0uiz3183NmLFWh5CuDOcQG%2BMgH72MnXZaNkeYUA0Igqg%3D%3D | SCR_025297 | Avanti J-30I High-Speed Centrifuge | 2026-08-08 12:07:21 | 1 | ||||||||
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Thermo Fisher: Invitrogen: ZP10001 ZOOM Dual Power Supply Resource Report Resource Website |
Thermo Fisher: Invitrogen: ZP10001 ZOOM Dual Power Supply (RRID:SCR_025298) | instrument resource | Two-in-one programmable power supple capable of handling high voltage/low current and high current/low voltage applications concurrently and independently. The high voltage/low current section is ideal for sample fractionation, IPG strips, IEF, and DNA sequencing applications while the low voltage/high current section is for SDS-PAGE, native PAGE, second-dimension SDS-PAGE, DNA/RNA electrophoresis, and blotting applications. | Restricted | Model_Number_ZP10001_ZOOM | https://www.labx.com/item/featured/DIS-63231-21667 | https://www.thermofisher.com/order/catalog/product/ZP10001 | SCR_025298 | ZOOM Dual Power Supply | 2026-08-08 12:07:15 | 0 | ||||||||
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ChemoMetec: NC-250 Automated Cell Analyzer Resource Report Resource Website 1+ mentions |
ChemoMetec: NC-250 Automated Cell Analyzer (RRID:SCR_025290) | instrument resource | Automated cell analyzer, which can characterize cell properties using fluorescence imaging. Offers optimized protocols to meet needs of all mammalian cell types grown under different conditions. Cell count can be performed even on cells growing on microcarriers and in sphere cultures. Performs high-speed cell count and viability determination and offers unique 5-minute Cell Cycle Assay and 1-minute Apoptosis Assay for up to eight samples at the time. The intuitive software has unlimited licenses and produces on-screen data analysis and automated PDF reports., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ChemoMetec, benchtop image cytometer, cell analyzer, cell counter, | THIS RESOURCE IS NO LONGER IN SERVICE | Model_Number_NucleoCounter_NC-250 | SCR_025290 | NucleoCounter NC-250 Automated Cell Analyzer, NucleoCounter NC-250, ChemoMetec NucleoCounter NC-250 | 2026-08-08 12:07:14 | 1 | |||||||||
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Adaptively Sampled Particle Fluids Resource Report Resource Website |
Adaptively Sampled Particle Fluids (RRID:SCR_000083) | ASPF | simulation software, software application, source code, software resource | Scalable particle fluid simulation code for Lagrangian particle-based fluid simulation. This adaptive sampling strategy allows using smaller (and thus more) particles in geometrically complex regions, while less particles are used for thick flat fluid volumes. Additionally, a novel distance-based particle surface definition is implemented which hides the particle granularity and allows dynamic resampling near the fluid-air interface. The code is implemented in C++ and should compile on Linux. | fluid simulation, lagrangian particle fluid, linux |
is listed by: Biositemaps is listed by: Simtk.org |
Free, Available for download, Freely available | nif-0000-23328 | SCR_000083 | 2026-08-09 09:02:54 | 0 | ||||||||
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Orphelia Resource Report Resource Website 1+ mentions |
Orphelia (RRID:SCR_000119) | simulation software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. A metagenomic open reading frame (ORF) finding tool for the prediction of protein coding genes in short, environmental DNA sequences with unknown phylogenetic origin. The resource is based on a two-stage machine learning approach that uses linear discriminants to extract features from the ORFs. An artificial neural network then combines the features and computes a gene probability for each ORF fragment. | metagenomic open reading frame, tool, resource, protein, genes, DNA, phyologenetic origin, machine learning, linear discriminates, artificial neural network, computation, scientific computing, fragment | is listed by: OMICtools | PMID:19429689 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01492 | SCR_000119 | 2026-08-09 09:02:54 | 2 | ||||||||
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Porifera Ontology Resource Report Resource Website 1+ mentions |
Porifera Ontology (RRID:SCR_000134) | PORO | data or information resource, controlled vocabulary, ontology | An ontology covering the anatomy of Porifera (sponges). | owl, anatomy |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is listed by: Ontobee is related to: Information Artifact Ontology |
Free, Available for download, Freely available | nlx_157558 | https://code.google.com/p/porifera-ontology/, http://purl.bioontology.org/ontology/PORO, http://purl.obolibrary.org/obo/poro.owl | http://purl.obolibrary.org/obo/poro | SCR_000134 | 2026-08-09 09:02:54 | 1 | ||||||
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Time Event Ontology Resource Report Resource Website |
Time Event Ontology (RRID:SCR_000310) | TEO | data or information resource, controlled vocabulary, ontology | Ontology for representing events, time, and their relationships. | owl | is listed by: BioPortal | nlx_157610 | SCR_000310 | 2026-08-09 09:02:56 | 0 | |||||||||
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Variation Ontology Resource Report Resource Website |
Variation Ontology (RRID:SCR_000311) | VARIO | data or information resource, controlled vocabulary, ontology | An ontology for standardized, systematic description of effects, consequences and mechanisms of variations. | obo | is listed by: BioPortal | nlx_157622 | SCR_000311 | 2026-08-09 09:02:57 | 0 | |||||||||
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Semantic DICOM Ontology Resource Report Resource Website |
Semantic DICOM Ontology (RRID:SCR_000309) | SEDI | data or information resource, controlled vocabulary, ontology | An ontology for DICOM as used in the SeDI project. | owl | is listed by: BioPortal | nlx_157583 | SCR_000309 | 2026-08-09 09:02:56 | 0 | |||||||||
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Glide Resource Report Resource Website 10+ mentions |
Glide (RRID:SCR_000187) | Glide | simulation software, software application, software resource | Software package which approximates a complete search of the conformational, orientational, and positional space of the ligand in a given receptor. Used in drug development for predicting protein ligand binding modes and ranking ligands via high throughput virtual screening. | ligand, receptor, docking, computation, virtual, screening, drug, discovery |
is listed by: OMICtools is listed by: SoftCite has parent organization: Schrodinger works with: Ligprep |
PMID:18428795 | Restricted | OMICS_01601 | SCR_000187 | 2026-08-09 09:02:55 | 17 | |||||||
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forqs Resource Report Resource Website |
forqs (RRID:SCR_000643) | forqs | simulation software, software application, software resource | Software for forward-in-time population genetics simulation that tracks individual haplotype chunks as they recombine each generation. It also also models quantitative traits and selection on those traits. | c++, linux, osx, windows, command line, simulation, recombination, quantitative trait, selection, haplotype pattern |
is listed by: OMICtools has parent organization: University of California at Los Angeles; California; USA has parent organization: Bitbucket |
NHGRI HG002536; NHGRI R01 HG007089; NSF EF-0928690 |
PMID:24336146 | Free, Available for download, Freely available | OMICS_02196 | SCR_000643 | Forward-in-time simulation of Recombination, and Selection, Quantitative traits | 2026-08-09 09:03:01 | 0 | |||||
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Phylogenetic Ontology Resource Report Resource Website |
Phylogenetic Ontology (RRID:SCR_000912) | PHYLONT | data or information resource, controlled vocabulary, ontology | Ontology for Phylogenetic Analysis | owl | is listed by: BioPortal | nlx_157550 | SCR_000912 | 2026-08-09 09:03:04 | 0 | |||||||||
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Bleeding History Phenotype Ontology Resource Report Resource Website |
Bleeding History Phenotype Ontology (RRID:SCR_001165) | BHO | data or information resource, controlled vocabulary, ontology | An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders. | owl | is listed by: BioPortal | Hemorrhagic disorder | nlx_157338 | SCR_001165 | 2026-08-09 09:03:08 | 0 | ||||||||
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Amphibian Taxonomy Ontology Resource Report Resource Website |
Amphibian Taxonomy Ontology (RRID:SCR_000906) | ATO | data or information resource, controlled vocabulary, ontology | A taxonomy of Amphibia | obo | is listed by: BioPortal | nlx_157317 | SCR_000906 | 2026-08-09 09:03:04 | 0 | |||||||||
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Anatomic Pathology Lexicon Resource Report Resource Website |
Anatomic Pathology Lexicon (RRID:SCR_000907) | PATHLEX | data or information resource, controlled vocabulary, ontology | A comprehensive lexicon - a unified language of anatomic pathology terms - for standardized indexing and retrieval of anatomic pathology information resources. | owl | is listed by: BioPortal | nlx_157318 | SCR_000907 | 2026-08-09 09:03:06 | 0 | |||||||||
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HIV ontology Resource Report Resource Website |
HIV ontology (RRID:SCR_000908) | HIV | data or information resource, controlled vocabulary, ontology | Ontology that encompasses all knowledge about HIV | obo | is listed by: BioPortal | HIV | nlx_157422 | SCR_000908 | 2026-08-09 09:03:04 | 0 | ||||||||
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Body System Terms from ICD11 Resource Report Resource Website |
Body System Terms from ICD11 (RRID:SCR_001252) | ICD11-BODYSYSTEM | data or information resource, controlled vocabulary, ontology | Ontology of a set of body-system terms used in the ICD (International Classification of Diseases) 11 revision | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157339 | SCR_001252 | 2026-08-09 09:03:08 | 0 | ||||||||
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PNEUMA Resource Report Resource Website 1+ mentions |
PNEUMA (RRID:SCR_001391) | PNEUMA | simulation software, software toolkit, software application, software resource | A set of modules that are used to simulate the autoregulation of the cardiovascular and respiratory systems under conditions of changing sleep-wake state and a variety of physiological and pharmacological interventions. It models the dynamic interactions that take place among the various component mechanisms, including those involved in the chemical control of breathing, heart rate, and blood pressure, as well as the effects of changes in the sleep-wake state and arousal from sleep. PNEUMA includes the autonomic control of the cardiovascular system, chemoreflex and state-related control of breath-to-breath ventilation, state-related and chemoreflex control of upper airway potency, as well as respiratory and circulatory mechanics. The model is capable of simulating the cardiorespiratory responses to sleep onset, arousal, continuous positive airway pressure, the administration of inhaled carbon dioxide and oxygen, Valsalva and Mueller maneuvers, and Cheyne-Stokes respiration during sleep. In PNEUMA 3.0, we have extended the existing integrative model of respiratory, cardiovascular, and sleepwake state control, to incorporate a sub-model of glucoseinsulinfatty acid regulation. The extended model is capable of simulating the metabolic control of glucoseinsulin dynamics and its interactions with the autonomic nervous system. The interactions between autonomic and metabolic control include the circadian regulation of epinephrine secretion, epinephrine regulation on dynamic fluctuations in glucose and free fatty acids in plasma, metabolic coupling among tissues and organs mediated by insulin and epinephrine, as well as the effect of insulin on peripheral vascular sympathetic activity. This extended model represents a starting point from which further in silico investigations into the interaction between the autonomic nervous system and the metabolic control system can proceed. Features in PNEUMA 3.0 * Incorporates metabolic component based on prior models of glucose-insulin regulation and free fatty acid (FFA) regulation. * Changes in sympathetic activity from the autonomic portion of PNEUMA produce changes in epinephrine output, which in turn affects the metabolic sub-model. * Inputs from the dietary intake of glucose and external interventions, such as insulin injections, have also been incorporated. * Also incorporated is autonomic feedback from the metabolic component to the rest of PNEUMA: changes in insulin level lead to changes in sympathetic tone. System Requirements: PNEUMA requires Matlab R2007b or higher with the accompanying version of Simulink to be installed on your computer. | matlab, simulate, autoregulation, cardiovascular system, respiratory system, sleep-wake state, physiological intervention, pharmacological intervention, drug, breathing, heart rate, blood pressure, respiration, glucose, insulin, fatty acid, regulation, autonomic nervous system, chemoreflex, ventilation, circulation, cardiorespiratory, metabolic control system, circadian, regulation, epinephrine | has parent organization: Biomedical Simulations Resource | NIBIB P41-EB001978; NCRR P41-RR01861 |
PMID:17271149 | Free, Freely Available | nlx_152572 | SCR_001391 | 2026-08-09 09:03:10 | 3 | ||||||
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Adobe FormsCentral Resource Report Resource Website |
Adobe FormsCentral (RRID:SCR_001729) | FormsCentral | commercial organization, service resource | Service to create PDF and web forms. | pdf, form, template | is listed by: FORCE11 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156027 | SCR_001729 | Adobe Forms Central | 2026-08-08 12:05:46 | 0 |
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