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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.foundationmedicine.com/
American company based in Cambridge, Massachusetts, which develops, manufactures, and sells genomic profiling assays based on next-generation sequencing technology for solid tumors, hematologic malignancies, and sarcomas. Specializes in precision medicine. FMI routinely analyzes cancer specimens using advanced sequencing technology of FoundationOne to profile tumor genomics.
Proper citation: Foundation Medicine (RRID:SCR_025628) Copy
Biotechnology company in Baltimore, Maryland, specializing in liquid biopsy. Offers comprehensive NGS testing services for clinical trials, enhancing oncology drug development and patient outcomes.
Proper citation: Sysmex Inostics (RRID:SCR_025629) Copy
Cancer research organization dedicated to accelerating the conquest of cancer. The mission is to prevent and cure cancer through research, education, communication, collaboration, science policy and advocacy, and funding for cancer research. Through its programs and services, the AACR fosters research in cancer and related biomedical science, accelerates dissemination of new research findings, promotes science education and training, and advances the understanding of cancer etiology, prevention, diagnosis, and treatment throughout the world.
Proper citation: American Association for Cancer Research (RRID:SCR_025561) Copy
https://brainlife.io/docs/using_ezBIDS/
Web-based BIDS conversion tool to convert neuroimaging data and associated metadata to BIDS standard. Guided standardization of neuroimaging data interoperable with major data archives and platforms.
Proper citation: ezBIDS (RRID:SCR_025563) Copy
https://www.accord-healthcare.com:2053/
Global pharmaceutical company that develops, manufactures and distributes essential medicines for hospitals and retail pharmacies.
Proper citation: Accord (RRID:SCR_025575) Copy
Australian oncology research institute, cancer treatment and professional oncologist training centre located in Melbourne, Victoria.
Proper citation: Peter MacCallum Cancer Institute (RRID:SCR_025611) Copy
https://www.licor.com/bio/odyssey-m/
Imager has multiple detection modes with up to 19 fluorescent and luminescent channel combinations to power wide range of assays including 3-Color Quantitative Western Blots, 3-Color In-Cell Western Assays, Cell Analysis Studies, ELISA, Tissue Section Imaging, Viral Titration Assays. Imager includes sCMOS image sensor and 5-micron resolution.
Proper citation: LI-COR: ODYSSEY M Imaging System (RRID:SCR_025709) Copy
Open-source software project for content collaboration and sharing and syncing of files in distributed and federated enterprise scenarios. Used for file synchronization and sharing of data. Platform that allows users to securely store, access, and manage files from anywhere, on any device. Designed for privacy and control, it offers customizable storage solutions, collaboration tools, and integrations, making it ideal for businesses and individuals seeking secure, self-hosted alternative to traditional cloud services.
Proper citation: ownCloud (RRID:SCR_025669) Copy
Laser scanner with exceptional data quality through extremely sensitive detection, high image resolution, and very broad linear dynamic range. Amersham Typhoon 5 model offers five-laser configuration option with advanced photomultiplier tubes. Has the same capabilities as Amersham Typhoon RGB model, with the addition of near-infrared (NIR) functionality.
Proper citation: Cytiva: Amersham Typhoon 5 (RRID:SCR_025702) Copy
https://www.beckman.com/centrifuges/ultracentrifuges/optima-max-xp/393315
Benchtop ultracentrifuge with separations for volumes as low as 175 ul, touch screen navigation, speeds up to 150,000 RPM, and RCF capability of up to 1019000 x g.
Proper citation: Beckman Coulter: Optima Max-XP Tabletop Ultracentrifuge (RRID:SCR_025704) Copy
https://nanotempertech.com/prometheus/
Instrument that uses nanoDSF to analyze protein folding and stability. Provides precise stability data across multiple parameters to characterize thermal unfolding, particle sizing, and aggregation of proteins. Used in variety of applications, including protein engineering, membrane protein research, formulation development, and quality control.
Proper citation: Oxford: Nanopore Technologies: Prometheus (RRID:SCR_025758) Copy
https://mass-spec.stanford.edu/about/instruments
Bruker timsTOF Ultra boasts increased sensitivity and resolution whilst allowing for exceptionally low sample input and resolution whilst allowing for exceptionally low sample input.
Proper citation: Stanford Bruker timsTOF Ultra nanoLC/MS (RRID:SCR_025639) Copy
Tapestri single-cell DNA sequencing platform provides both genotype and phenotype data from the same cell. Platform consists of instrument, DNA cartridge, which represents microfluidics device, and reagents. Cartridge is equipped with reservoirs that are used to load reagents required for automated cell processing. Pressure supplied by instrument drives reagents from reservoirs through microfluidic device and out to PCR collection tubes that are mounted below cartridge. Cartridge and tubes can be loaded and unloaded from instrument and disposed of after completion of workflow. User interacts with instrument via touch screen interface, which can be used to select programs, monitor status of running programs, and more.
Proper citation: Mission Bio: Tapestri Platform (RRID:SCR_025736) Copy
https://www.thermofisher.com/order/catalog/product/A52864?SID=srch-srp-A52864
PCR System is plate based digital PCR platform powered by proprietary microfluidic array plate technology that enables all necessary steps for dPCR including compartmentalizing, thermal cycling and data acquisition to be conducted on single instrument. Uses nucleic acid quantification technique that allows absolute quantification without the need for standard curves. Bulk reaction mix is distributed or digitized into thousands of small independent reactions so that each micro-chamber contains either one or zero copies of the target. Statistical methods are then used to calculate the original concentrations based on the number of positive and negative micro-chambers.
Proper citation: Thermo Fisher: Applied Biosystems: QuantStudio Absolute Q Digital PCR System (RRID:SCR_025737) Copy
https://4nsi.com/scanning-services/
Industrial x-ray facilities with microfocus and high energy 2D and CT systems. Provides instruments for biological CT scanning as service.
Proper citation: North Star Imaging US Labs (RRID:SCR_025754) Copy
Open system to manage data without central server. Peer-to-peer content delivery network built around the content addressing: store, retrieve, and locate data based on fingerprint of its actual content rather than its name or location.
Proper citation: InterPlanetary File System (RRID:SCR_025685) Copy
Web bioinformatics platform that integrates interactive bioinformatics tools, original omics books, bioinformatics forums, and video tutorials. Used for RNA seq analysis, heat map illustration, etc.
Proper citation: Omicshare (RRID:SCR_025711) Copy
System for applications requiring high-quality Ultra High Performance Liquid Chromatography. Uses high pressure to separate and identify components of mixture. Provides accurate separation, retention times, peak area, detector sensitivity and reduced baseline noise for high flow rates.
Proper citation: Thermo Fisher: Vanquish Horizon UHPLC System (RRID:SCR_025713) Copy
https://tracedrawer.com/product/tracedrawer/
Software for evaluating, comparing and presenting real-time interaction data. Used for quantification of kinetics and affinity through curve fitting, with large number of binding models to choose from. Can extract experimental information from measurement, requiring minimal user input.
Proper citation: TraceDrawer (RRID:SCR_025782) Copy
Funding organization for neurodegenerative disorders and use of AI in it. 501(c)(3) philanthropic initiative that seeks to accelerate the use of artificial intelligence (AI) in the fight against neurodegenerative diseases.
Proper citation: 10,000 Brains Project (RRID:SCR_025785) Copy
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