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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
multiMiR
 
Resource Report
Resource Website
multiMiR (RRID:SCR_028726) software resource, software toolkit, source code Software R package to integrate and query microRNA (miRNA) data. It allows retrieve and analyze validated and predicted miRNA-target interactions, as well as their associations with various diseases and drugs. integrate and query microRNA data, retrieve and analyze validated and predicted miRNA-target interactions, diseases, drugs NCI R01CA075115;
NIAAA K01AA16922;
NIAAA R01AA021131;
NIAAA R01AA016957;
NIAAA R24AA013162
PMID:25063298 Free, Available for download, Freely available https://github.com/KechrisLab/multiMiR, https://bioconductor.org/packages/release/bioc/html/multiMiR.html SCR_028726 multiMiR R package 2026-08-04 09:46:30 0
MARIA
 
Resource Report
Resource Website
MARIA (RRID:SCR_028673) web application, software resource Web multimodal recurrent neural network tool designed to predict HLA-II (Human Leukocyte Antigen class II) peptide ligand presentation. It uses cell HLA alleles, peptide sequences, and source genes to evaluate antigen presentation. Used for predicting the likelihood of antigen presentation from a gene of interest in the context of specific HLA class II alleles. multimodal recurrent neural network, predicting likelihood of antigen presentation, gene of interest, specific HLA class II alleles, is organization facet of: Stanford University; Stanford; California NCI U01 CA194389;
NCI K08 CA207882;
NIGMS GM 102365;
NCRR S10RR027431
PMID:31611695 Free, Freely available SCR_028673 MARIA:Major Histocompatibility Complex Analysis with Recurrent Integrated Architecture 2026-08-04 09:46:33 0

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