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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Colorado Anschutz Medical Campus Diabetes Research Center Disease Modeling Core Facility Resource Report Resource Website |
University of Colorado Anschutz Medical Campus Diabetes Research Center Disease Modeling Core Facility (RRID:SCR_022905) | access service resource, core facility, service resource | Provides diabetes researchers with access to novel human stem cell-derived in vitro cell models for investigating cellular and molecular features of both Type 1 and Type 2 diabetes. Recent progress in stem cell, organoid culture, gene editing and directed differentiation technologies has afforded opportunities to develop pre-clinical human models.Provides expertise, infrastructure and access to novel human model systems and technologies to DRC investigators. Provides expertise, resources and training in stem cell technologies together with quality control testing, validation standardization and authentication all model platforms and reagents. | ABRF, USEDit, human stem cell derived in vitro cell models, Type 1 and Type 2 diabetes |
is related to: University of Colorado Diabetes Research Center is related to: USEDit has parent organization: University of Colorado; Colorado; USA |
NIDDK P30DK116073 | SCR_022905 | University of Colorado Diabetes Research Center Disease Modeling Core | 2026-08-04 09:45:08 | 0 | |||||||||
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University of Colorado Anschutz Medical Campus Diabetes Research Center Clinical Resource Core Facility Resource Report Resource Website |
University of Colorado Anschutz Medical Campus Diabetes Research Center Clinical Resource Core Facility (RRID:SCR_022903) | DRC CR | access service resource, core facility, service resource | Core leverages current clinical research facilities and equipment available at Barbara Davis Center for Childhood Diabetes, UC AMC Clinical Translational Research Center, University of Colorado Hospital, Denver Veteran Administration Medical Center and Children Hospital Colorado.Core integrates diabetes research across these institutions through communication and distribution of resources available, and creates shared sample and data biobanks and recruiting database of mothers, infants, children, adolescents and adults with diabetes, diabetes risk and controls. | ABRF, USEDit, diabetes, diabetes risk and controls |
is related to: USEDit is related to: University of Colorado Diabetes Research Center has parent organization: University of Colorado; Colorado; USA |
NIDDK P30DK116073 | SCR_022903 | University of Colorado Diabetes Research Center Clinical Resource Core | 2026-08-04 09:45:10 | 0 | ||||||||
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Rare and Atypical Diabetes Network Resource Report Resource Website 1+ mentions |
Rare and Atypical Diabetes Network (RRID:SCR_024732) | RADIANT | portal, topical portal, disease-related portal, database, data or information resource | Portal dedicated to characterizing, discovering and defining rare and atypical forms of diabetes. Network of universities, hospitals and clinics across the United States dedicated to better understanding atypical diabetes. Team of academic institutions and scientists collaborates with physicians and healthcare groups to identify those with atypical diabetes and learn more about their health. | USA, universities network, hospitals and clinics network, characterizing atypical diabetes, discovering atypical diabetes, defining atypical diabetes, rare and atypical forms of diabetes, atypical diabetes, |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository |
rare and atypical forms of diabetes, Diabetes | NIDDK | Restricted | SCR_024732 | Rare and Atypical DIAbetes NeTwork | 2026-08-04 09:45:35 | 2 | ||||||
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dREG Resource Report Resource Website 1+ mentions |
dREG (RRID:SCR_027012) | software application, software resource, source code | Software tool for detecting regulatory elements using GRO-seq and PRO-seq. | detecting regulatory elements, GRO-seq, PRO-seq | NHGRI 5R01HG007070; NIDDK R01 DK058110 |
PMID:25799441 | Free, Available for download, Freely available | SCR_027012 | 2026-08-04 09:46:08 | 1 | |||||||||
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ChemPerturbDB Resource Report Resource Website |
ChemPerturbDB (RRID:SCR_027190) | web application, software resource, database, data or information resource | Artificial Intelligence (AI)-powered website, which provides user-friendly open access analysis of extensive ChemPerturb-seq dataset. | Artificial Intelligence (AI)-powered website, ChemPerturb-seq dataset analysis, | NIDDK R01DK137517; NIDDK R01DK124463; NIDDK R01DK130454; Department of Surgery ; Weill Cornell Medicine ; American Diabetes Association ; Integrated Islet Distribution Program ; Eunice Kennedy Shriver NICHD |
PMID:40562034 | Free, Freely available | SCR_027190 | 2026-08-04 09:46:09 | 0 | |||||||||
|
University of California San Francisco Parnassus Flow Cytometry Core Facility Resource Report Resource Website 100+ mentions |
University of California San Francisco Parnassus Flow Cytometry Core Facility (RRID:SCR_018206) | PFCC | access service resource, core facility, service resource | Core assists investigators whose research requires molecular marker characterization of cells in suspension as well as isolation of cells based on those markers. Advanced cell sorting and cytometric analyses by Flow or Mass Cytometry are provided. | Molecular marker, cell characterization, cell in suspension, cell isolation, cell sorting, flow cytometry, mass cytometry, cytometric analysis, core facility, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit |
NIDDK P30DK063720 | Restricted | ABRF_1007, SCR_015105 | https://coremarketplace.org?FacilityID=1007 | SCR_018206 | University of California San Francisco Diabetes Research Center Cytometry and Cell Sorting Core, , University of California San Francisco Diabetes Research Center Parnassus Flow Cytometry CoLab, UCSF Parnassus Flow CoLab | 2026-08-04 09:44:21 | 146 | |||||
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Stem Cell Genome Anatomy Projects Resource Report Resource Website |
Stem Cell Genome Anatomy Projects (RRID:SCR_014517) | SCGAP | group | A research organization which aims to conduct a variety of stem cell research projects. These projects include: to CD phenotype the human prostate and bladder using a confocal microscopy, to CD the phenotype of the mouse prostate and bladder, to profile samples of basal and stromal cells using uncultured cells, to confirm cell-type specific expression of genes that were identified by array analysis, and to create a database with the resulting database. | stem cell, research, cd, human phenotype, human prostate, bladder, confocal microscopy, mouse prostate, array analysis, |
is listed by: GUDMAP Ontology is listed by: NIDDK Information Network (dkNET) |
NIDDK | SCR_014517 | SCGAP Urologic Epithelial Stem Cells Project | 2026-08-01 12:05:04 | 0 | ||||||||
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Pediatric Centers of Excellence in Nephrology Resource Report Resource Website |
Pediatric Centers of Excellence in Nephrology (RRID:SCR_015721) | Portal with detailed information about various research centers that focus on pediatric medicine and nephrology. These centers are funded by NIDDK. | pediatric, kidney disease, nephrology, niddk, funded by niddk |
is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center has organization facet: Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology has organization facet: Pediatric Centers of Excellence in Nephrology at University of Virginia |
NIDDK | SCR_015721 | 2026-08-01 12:05:19 | 0 | |||||||||||
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nanoPOTS Resource Report Resource Website 1+ mentions |
nanoPOTS (RRID:SCR_017129) | instrument resource | Nanodroplet processing platform for deep and quantitative proteome profiling of 10 to 100 mammalian cells. It enhances efficiency and recovery of sample processing by downscaling processing volumes. | nanodroplet, processing, platform, quantitative, proteome, profiling, analysis, mammalian, cell, small, volume | has parent organization: Pacific Northwest National Laboratory | NIBIB R21 EB020976; NCI R33 CA225248; NIGMS P41 GM103493; NIDDK UC4 DK104167; NIDDK DP3 DK110844; NIH Office Of The Director S10 OD016350; JDRF |
PMID:29491378 | SCR_017129 | 2026-08-01 12:05:46 | 1 | |||||||||
|
Diabetes Prevention Type 1 Resource Report Resource Website |
Diabetes Prevention Type 1 (RRID:SCR_001467) | DPT-1 | biomaterial supply resource, material resource | Data set and biosepecimens of a multi-center clinical trial to determine if treatment with beta-cell antigens can delay the onset of Type 1 Diabetes Mellitus (Type 1 DM) in non-diabetic relatives of persons with Type 1 DM. Insulin is a well characterized antigen specifically produced by beta-cells, and it was used for this purpose in the initial DPT-1 studies. The protocol for high risk subjects uses daily subcutaneous insulin injections and an annual course of intravenous insulin treatment, while the protocol for intermediate risk subjects uses daily doses of insulin administered orally. Neither injected nor oral insulin at the doses used were observed to delay or prevent diabetes, although further studies are needed to test whether oral insulin can delay diabetes in people in the intermediate risk group with high titers of insulin autoantibodies. | beta cell antigen, insulin, prevention, onset, subcutaneous injection, oral, intravenous, treatment, randomized, controlled trial, drug therapy, delay |
is listed by: One Mind Biospecimen Bank Listing is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Type 1 diabetes, Diabetes | NIDDK UC4 DK097835 | Free, Freely Available | nlx_152696 | https://www.niddkrepository.org/niddk/jsp/public/dataset.jsp#DPT-1 | SCR_001467 | Diabetes Prevention Trial--Type 1 (DPT-1) dataset, DPT-1 (The Diabetes Prevention Type 1) | 2026-08-01 12:10:31 | 0 | ||||
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Drug-Induced Liver Injury Network Resource Report Resource Website 1+ mentions |
Drug-Induced Liver Injury Network (RRID:SCR_001524) | DILIN | biomaterial supply resource, material resource | Prospective and retrospective registry of well-characterized cases of drug-induced liver disease. The goals of Network include the development of standardized procedures to identify and fully characterize bona fide cases of drug- and complementary and alternative medicines (CAM)-induced liver injury, and to conduct controlled, clinical studies that will include extensive collection of data, serum, DNA, and tissue specimens. Cases of liver injury due to herbal medications are also included. The network will also develop terminology and standardized definitions for DILI, and to develop causality assessment instruments that are sensitive, specific, and reproducible. DILIN is funded by a cooperative agreement and includes five clinical centers and a central data coordinating center. The research goals of DILIN are to: * Create a registry of carefully documented DILI cases * Identify clinical, immunological, and environmental risk factors for drug- and CAM-mediated hepatotoxicity * Create a bank of biological specimens consisting of DNA, plasma, and immortalized lymphocytes to facilitate detailed genetic analyses * Characterize the natural history of drug- and CAM-induced DILI for at least six months following enrollment * Develop the capability to recontact these individuals over an extended period of time so that additional studies exploring DILI mechanisms can be performed Two studies are being initiated by the network. In the Retrospective Study, the implicated drugs are restricted to isoniazid, phenytoin, combination clavulanic acid/amoxicillin, and valproic acid (Depakote), Nitrofurantoin, Trimethoprim-sulfamethoxazole, Minocycline, and Quinolone antibiotics. These drugs were chosen because they are frequently administered to patients not receiving other hepatotoxic drugs, making it easier to establish causality. Patients must be alive, and the date of onset of the DILI episode must be on or after January 1, 1994. In the Prospective Study, all incident cases of drug- and CAM-induced liver injury are being considered. Initial presentation to a healthcare professional must be within the previous six months. A detailed medication history of the implicated DILI drug together with all prescription, OTC, and herbal medications is being recorded. Liver and serological tests are being performed to characterize the injury and to exclude competing causes of liver injury. A blood sample is also being drawn for plasma storage and DNA isolation. These cases will be followed longitudinally to characterize the long-term effects of the DILI episode. For both studies, documented, clinically significant DILI must be recorded in the patient's medical charts so that a causal determination can be made. Patients will be excluded if they are unwilling or unable to provide a blood sample or participate in the genetics component. Children under two years of age at the time of enrollment are excluded due to blood-volume requirements. If you have patients who are eligible to participate in either study, please contact one the DILIN clinical sites. As a general policy, the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) invites investigator-initiated research project applications for ancillary studies to ongoing, large-scale clinical trials, epidemiological studies, and disease databases supported by the Institute. These studies are focused on a wide range of diseases and conditions including diabetes, obesity, acute and chronic liver disease, chronic kidney disease, and benign prostatic hyperplasia, among others. | prescription drug, over-the-counter drug, alternative medicine, herbal product, supplement, serum, dna, tissue, blood, immortalized lymphocyte, drug, medication, quinolone antibiotic, isoniazid, phenytoin, clavulanic acid, amoxicillin, valproic acid, depakote, nitrofurantoin, trimethoprim-sulfamethoxazole, minocycline, diagnosis, hepatotoxicity, risk factor, genetic analysis |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers has parent organization: Duke University; North Carolina; USA |
Liver injury, Hepatic injury, Drug-induced liver disease | NIDDK | Qualified investigators, Account required | nlx_152822 | https://dilin.dcri.duke.edu/ | SCR_001524 | 2026-08-01 12:10:36 | 5 | |||||
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NIH Chronic Prostatitis Symptom Index Resource Report Resource Website |
NIH Chronic Prostatitis Symptom Index (RRID:SCR_001482) | CPSI, NIH-CPSI | material resource, assessment test provider | Questionnaire developed by physicians in NIDDK's Chronic Prostatitis Collaborative Research Network that can help physicians to accurately measure the severity of prostatitis symptoms and their impact on a patient's lifestyle. The CPSI questionnaire assesses pain, urination, and the effect of chronic prostatitis on daily activities. With this information, researchers and physicians can reliably evaluate whether potential treatments are working. The questionnaire was originally published in the Journal of Urology in August 1999 (Vol. 162, pages 369-375). It is available as a PDF document in English, Spanish, German and Korean. | pain, symptom, quality of life, male | is listed by: NIDDK Information Network (dkNET) | Prostatitis | NIDDK | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152732 | SCR_001482 | Chronic Prostatitis Symptom Index, National Institutes of Health Chronic Prostatitis Symptoms Index | 2026-08-01 12:10:44 | 0 | |||||
|
Patient-Reported Outcomes Measurement Information System Resource Report Resource Website 1000+ mentions |
Patient-Reported Outcomes Measurement Information System (RRID:SCR_004718) | PROMIS | material resource, assessment test provider | Repository of person centered measures that evaluates and monitors physical, mental, and social health in adults and children. | adult, child, assessment, clinical, anger, pain, fatigue, physical function, depression, anxiety, social function, patient reported outcome, health, measure |
is recommended by: National Library of Medicine has parent organization: University of Washington; Seattle; USA |
NCCIH ; NCI ; NHLBI ; NIA ; NIAMS ; NIDA ; NIDCD ; NIDDK ; NIMH ; NINDS ; NINR ; OD |
nlx_143881 | http://www.healthmeasures.net/index.php?option=com_content&view=category&layout=blog&id=71&Itemid=817 | SCR_004718 | PROMIS, Patient Reported Outcomes Measurement Information System | 2026-08-01 12:10:50 | 2881 | ||||||
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MediBeacon: Transdermal GFR Monitor Resource Report Resource Website |
MediBeacon: Transdermal GFR Monitor (RRID:SCR_024533) | instrument resource | Transdermal Glomerular Filtration Rate monitor used to assess renal function in mouse and rat models of acute kidney injury and chronic kidney disease. | Transdermal, Glomerular Filtration Rate, monitor, assess renal function, mouse, rat, acute kidney injury, chronic kidney disease, | Vanderbilt Center for Kidney Disease ; DOD PR161028; NIDDK R01DK112688 |
PMID:30394397 | Restricted | SCR_024533 | 2026-08-01 12:08:04 | 0 | |||||||||
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Behavior Enhances Drug Reduction of Incontinence Resource Report Resource Website |
Behavior Enhances Drug Reduction of Incontinence (RRID:SCR_001495) | BE-DRI | resource, clinical trial, data or information resource, bibliography | Multi-center randomized clinical trial to determine if the addition of behavioral treatment to drug therapy for the treatment of urge incontinence will make it possible to discontinue the drug and still maintain a reduced number of accidents. The most popular treatments for urge incontinence are drug therapy and behavior therapy, each with its own limitations. In this clinical study, the Urinary Incontinence Treatment Network (UITN) aims to determine differences with the addition of behavioral treatment to drug therapy alone. | drug therapy, behavioral therapy, female, urinary incontinence, overactive bladder, combined modality therapy, quality of life, pelvic floor muscle exercise, tolterodine, clinical |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) has parent organization: Urinary Incontinence Treatment Network |
Urge incontinence, Urinary Incontinence | NIDDK U01DK58225; NIDDK U01DK58234; NIDDK U01DK58229; NIDDK U01DK58231; NIDDK U01DK60397; NIDDK U01DK60401; NIDDK U01DK60395; NIDDK U01DK60393; NIDDK U01DK60380; NIDDK U01DK60379 |
PMID:16919506 | Free, Freely available | nlx_152752 | http://www.uitn.net/bedri.asp | SCR_001495 | 2026-08-03 09:31:24 | 0 | ||||
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University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core Resource Report Resource Website |
University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core (RRID:SCR_015615) | biomaterial supply resource, material resource, organism supplier | Core facility that supports animal model and basic research projects of CGIBD investigators. Investigators use this resource to examine physiologic and pathophysiologic differences in germ-free, gnotobiotic, and specific pathogen free colonized mice of various genetic backgrounds. | gnotobiotic, animal model, physiology, pathophysiology, mouse, mouse model |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina Center for Gastrointestinal Biology and Disease is organization facet of: University of North Carolina Center for Gastrointestinal Biology and Disease |
digestive disease | NIDDK P30 DK034987 | Available to CGBID Members | SCR_015615 | 2026-08-03 09:36:20 | 0 | ||||||||
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University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core Resource Report Resource Website |
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core (RRID:SCR_015622) | biomaterial supply resource, material resource, organism supplier | Core facility that provides a centralized service to efficiently produce genetically altered mice for basic research, resulting in reduction in effort and cost to participating investigators. | genetically altered mice, knockout mice |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases is organization facet of: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease, liver disease, pancreatic disease | NIDDK P30 DK050306 | Available to the research community | SCR_015622 | 2026-08-03 09:36:02 | 0 | ||||||||
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Teddy study IA prediction Resource Report Resource Website 1+ mentions |
Teddy study IA prediction (RRID:SCR_023303) | software toolkit, software resource | Software package to impute gene expression for all participants, whether they have partially or completely missing gene expression. | impute gene expression, gene expression, gene expression prediction | is related to: TEDDY | NIDDK U24DK097771 | DOI:10.1093/bib/bbac537 | Free, Available for download, Freely available | SCR_023303 | 2026-08-02 09:08:43 | 1 | ||||||||
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Sparse Inverse Covariance Estimation for Ecological Association Inference Resource Report Resource Website 10+ mentions |
Sparse Inverse Covariance Estimation for Ecological Association Inference (RRID:SCR_022646) | SPIEC-EASI | software toolkit, software resource | Software R package estimates inverse covariance matrix from sequencing data.Statistical method for inference of microbial ecological networks from amplicon sequencing datasets. | inverse covariance matrix estimation, sequencing data, microbial ecological networks inference, amplicon sequencing datasets microbial ecological networks, | NIAID T32AI007180; NIDDK R01 DK103358; NIGMS RO1 GM63270; Simons Foundation |
PMID:25950956 | Free, Available for download, Freely available | SCR_022646 | SParse InversE Covariance Estimation for Ecological Association Inference | 2026-08-02 09:08:41 | 12 | |||||||
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Metscape Resource Report Resource Website 100+ mentions |
Metscape (RRID:SCR_014687) | resource, software resource, source code | A software program that allows users to visualize and interpret human metabolim and expression profiling data by providing users with a bioinformatics framework. Its features include bulding and analyzing networks of genes and compounds, identifying enriched pathways from expression profiling data, and visualizing changes in metabolite data. | metabolomics, metabolomics tool, visualization, expression profiling, gene, compound, metabolism, human |
is listed by: Metabolomics Workbench is listed by: SoftCite |
NIDDK U24 DK097153; NIDDK P30DK089503 |
PMID:22135418 | Freely available | SCR_014687 | 2026-08-03 09:35:35 | 145 |
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