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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ontology for General Medical Science Resource Report Resource Website |
Ontology for General Medical Science (RRID:SCR_010384) | OGMS | ontology, data or information resource, controlled vocabulary | An ontology based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop (Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. | owl, clinical, phenotype, medicine, pathological, molecular, cellular, organismal, multi-organismal |
is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code |
nlx_157515 | http://purl.bioontology.org/ontology/OGMS, http://purl.obolibrary.org/obo/ogms.owl | SCR_010384 | Clinical Phenotype Ontology | 2026-08-04 09:42:39 | 0 | |||||||
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Menelas Project Top-Level Ontology Resource Report Resource Website |
Menelas Project Top-Level Ontology (RRID:SCR_010356) | TOP-MENELAS | ontology, data or information resource, controlled vocabulary | Ontology to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realization of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain. | owl | is listed by: BioPortal | nlx_157473 | SCR_010356 | 2026-08-04 09:42:39 | 0 | |||||||||
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MicroRNA Ontology Resource Report Resource Website |
MicroRNA Ontology (RRID:SCR_010360) | MIRNAO | ontology, data or information resource, controlled vocabulary | An application ontology for microRNAs. | owl | is listed by: BioPortal | nlx_157477 | https://code.google.com/p/mirna-ontology/ | SCR_010360 | 2026-08-04 09:42:39 | 0 | ||||||||
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Microbial Typing Ontology Resource Report Resource Website |
Microbial Typing Ontology (RRID:SCR_010362) | TYPON | ontology, data or information resource, controlled vocabulary | Ontology that provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field. | owl | is listed by: BioPortal | nlx_157479 | SCR_010362 | 2026-08-04 09:42:39 | 0 | |||||||||
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RNA Ontology Resource Report Resource Website 1+ mentions |
RNA Ontology (RRID:SCR_003470) | RNAO | ontology, data or information resource, controlled vocabulary | An ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary structure from base pairing and base stacking to sophisticated motifs. | owl, obo, molecular structure, molecular, rna, sequence, alignment, structure, base pairing, base stacking, motif |
is listed by: BioPortal is listed by: OBO is listed by: Google Code |
Free, Available for download, Freely available | nlx_157566 | http://purl.bioontology.org/ontology/RNAO, http://rnao.googlecode.com/svn/trunk/rnao.obo | SCR_003470 | 2026-08-04 09:40:55 | 1 | |||||||
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Influenza Ontology Resource Report Resource Website |
Influenza Ontology (RRID:SCR_003346) | FLU | ontology, data or information resource, controlled vocabulary | An application ontology established by a collaborative group of influenza researchers that includes consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS) | owl, health, pathological, organismal, cellular, sequence, surveillance |
is listed by: BioPortal is listed by: OBO is related to: Information Artifact Ontology has parent organization: University of Maryland; Maryland; USA |
Influenza | Free, Freely available | nlx_157440 | http://purl.obolibrary.org/obo/flu.owl, http://influenzaontologywiki.igs.umaryland.edu/ | http://purl.bioontology.org/ontology/FLU | SCR_003346 | 2026-08-04 09:40:53 | 0 | |||||
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Mouse Experimental Design Ontology Resource Report Resource Website |
Mouse Experimental Design Ontology (RRID:SCR_003879) | MEDO | ontology, data or information resource, controlled vocabulary | Ontology of experimental design for high-throughput mouse analysis pipelines. | owl | is listed by: BioPortal | nlx_157487 | SCR_003879 | 2026-08-04 09:41:01 | 0 | |||||||||
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Cell Type Ontology Resource Report Resource Website 1+ mentions |
Cell Type Ontology (RRID:SCR_004251) | CL | ontology, data or information resource, controlled vocabulary | Ontology designed as a structured controlled vocabulary for cell types. It was constructed for use by the model organism and other bioinformatics databases. It includes cell types from prokaryotes, mammals, and fungi. The ontology is available in the formats adopted by the Open Biological Ontologies umbrella and is designed to be used in the context of model organism genome and other biological databases. | cell ontology, ontology repository |
is listed by: BioPortal is listed by: Ontology Lookup Service is related to: CELDA Ontology is related to: OBO is related to: Cell Line Knowledge Base |
BBSRC ; MRC ; NIH ; NSF DBI-9978564; NSF PGRP-0321666 |
PMID:15693950 | Free, Freely available | nlx_26501 | http://purl.bioontology.org/ontology/CL | http://cellontology.org, http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell, | SCR_004251 | cellontology.org, Obo-cell-type, Cell Ontology | 2026-08-04 09:41:06 | 6 | |||
|
Clinical Signs and Symptoms Ontology Resource Report Resource Website |
Clinical Signs and Symptoms Ontology (RRID:SCR_007226) | CSSO | ontology, data or information resource, controlled vocabulary | An ontology for describing clinical signs and symptoms. | owl | is listed by: BioPortal | nlx_157365 | http://mdb.bio.titech.ac.jp/csso | SCR_007226 | 2026-08-04 09:41:48 | 0 | ||||||||
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Skin Physiology Ontology Resource Report Resource Website |
Skin Physiology Ontology (RRID:SCR_006253) | SPO | ontology, data or information resource, controlled vocabulary | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157589 | SCR_006253 | 2026-08-04 09:41:33 | 0 | ||||||||
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Physician Data Query Resource Report Resource Website 1+ mentions |
Physician Data Query (RRID:SCR_006833) | PDQ | registry, controlled vocabulary, people resource, ontology, clinical trial, database, data or information resource | NCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish. | adult, pediatric, child, alternative, breast, clinical trial, colorectal, hypercalcemia, legal, lung, medicine, medullary, nausea, ovarian, pain, pathophysiology, pediatric, pharmaceutical, physician, prevention, prognosis, prostate, psychosocial, query, risk factor, screening, social, syndrome, thyroid, treatment, umls, genetics, medical, drug, peer review |
is listed by: BioPortal has parent organization: National Cancer Institute |
Cancer, Cancer-related condition | NCI | nif-0000-21318 | SCR_006833 | PDQ - NCI''s Comprehensive Cancer Database | 2026-08-04 09:41:41 | 2 | ||||||
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Cell Cycle Ontology Resource Report Resource Website |
Cell Cycle Ontology (RRID:SCR_007085) | CCO | ontology, data or information resource, controlled vocabulary | An application ontology integrating knowledge about the eukaryotic cell cycle. | obo | is listed by: BioPortal | nlx_157355 | http://www.semantic-systems-biology.org/cco/ | SCR_007085 | 2026-08-04 09:41:46 | 0 | ||||||||
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suicideonto Resource Report Resource Website |
suicideonto (RRID:SCR_010452) | suicideo | ontology, data or information resource, controlled vocabulary | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157633 | SCR_010452 | 2026-08-04 09:42:41 | 0 | |||||||||
|
Human Developmental Anatomy Ontology abstract version 2 Resource Report Resource Website |
Human Developmental Anatomy Ontology abstract version 2 (RRID:SCR_010337) | EHDAA2 | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release. | obo | is listed by: BioPortal | nlx_157430 | SCR_010337 | 2026-08-04 09:42:43 | 0 | |||||||||
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Ontology of Data Mining Investigations Resource Report Resource Website |
Ontology of Data Mining Investigations (RRID:SCR_010394) | ONTODM-KDD | ontology, data or information resource, controlled vocabulary | Ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology. | owl | is listed by: BioPortal | nlx_157527 | SCR_010394 | 2026-08-04 09:42:45 | 0 | |||||||||
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Traditional Medicine Meridian Value Sets Resource Report Resource Website |
Traditional Medicine Meridian Value Sets (RRID:SCR_010436) | TM-MER | ontology, data or information resource, controlled vocabulary | Ontology of the meridian value set used in the International Classification of Traditional Medicine. | owl | is listed by: BioPortal | nlx_157613 | SCR_010436 | 2026-08-04 09:42:45 | 0 | |||||||||
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Cell Line Ontology by Mahadevan Resource Report Resource Website |
Cell Line Ontology by Mahadevan (RRID:SCR_010281) | MCCL | ontology, data or information resource, controlled vocabulary | A comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format. | owl, cell line | is listed by: BioPortal | Normal, Pathologic | nlx_157356 | SCR_010281 | Cell Line Ontology (by Mahadevan) | 2026-08-04 09:42:37 | 0 | |||||||
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National Drug File - Reference Terminology Resource Report Resource Website |
National Drug File - Reference Terminology (RRID:SCR_010372) | NDFRT | ontology, data or information resource, controlled vocabulary | Ontology of National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11 | umls | is listed by: BioPortal | nlx_157500 | SCR_010372 | 2026-08-04 09:42:39 | 0 | |||||||||
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MedlinePlus Resource Report Resource Website 50+ mentions |
MedlinePlus (RRID:SCR_006512) | MedlinePlus | database, data or information resource, video resource | Database of authoritative health information about diseases, conditions, and wellness issues that offers reliable, up-to-date health information for free. It contains the latest treatments, information on drugs and supplements, the meanings of words, and medical videos and illustrations. Links to the latest topic or disease specific medical research or clinical trials are also offered. * MedlinePlus pages contain carefully selected links to Web resources with health information on over 900 topics. ** The MedlinePlus health topic pages include links to current news on the topic and related information. You can also find preformulated searches of the MEDLINE/PubMed database, which allow you to find references to latest health professional articles on your topic. * The A.D.A.M. medical encyclopedia brings health consumers an extensive library of medical images and videos, as well as over 4,000 articles about diseases, tests, symptoms, injuries, and surgeries. * The Merriam-Webster medical dictionary allows you to look up definitions and spellings of medical words. * Drug and supplement information is available from the American Society of Health-System Pharmacists (ASHP) via AHFS Consumer Medication Information, and Natural Medicines Comprehensive Database Consumer Version. ** AHFS Consumer Medication Information provides extensive information about more than 1,000 brand name and generic prescription and over-the-counter drugs, including side effects, precautions and storage for each drug. ** Natural Medicines Comprehensive Database Consumer Version is an evidence-based collection of information on alternative treatments. MedlinePlus has 100 monographs on herbs and supplements. * Interactive tutorials from the Patient Education Institute explain over 165 procedures and conditions in easy-to-read language. An XML File for the MedlinePlus Health Topics is available, http://www.nlm.nih.gov/medlineplus/xmldescription.html. The ontology is available through Bioportal, http://bioportal.bioontology.org/ontologies/MEDLINEPLUS | drug, herb, medication, over-the-counter, prescription, supplement, health, clinical trial, disease, condition, image, test, symptom, injury, surgery, generic drug, umls, ontology, gold standard |
is listed by: BioPortal is related to: EBIMed is related to: MalaCards has parent organization: National Library of Medicine |
Free | nif-0000-10315 | SCR_006512 | MedlinePlus Health Topics, MedlinePlus - Drugs, Supplements and Herbal Information | 2026-08-04 09:41:38 | 99 |
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