Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Funding Agency:national natural science foundation of china (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

105 Results - per page

Show More Columns | Download 105 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
BinPacker
 
Resource Report
Resource Website
10+ mentions
BinPacker (RRID:SCR_017038) software resource, data processing software, software application, data analysis software Software tool as de novo trascriptome assembler for RNA-Seq data. Used to assemble full length transcripts by remodeling problem as tracking set of trajectories of items over splicing graph. Input RNA-Seq reads in fasta or fastq format, and ouput all assembled candidate transcripts in fasta format. Operating system Unix/Linux. de novo, transcriptome, assembler, RNAseq, data, full, length, transcript, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
National Natural Science Foundation of China ;
NSF 1553680;
NCRR P20 RR01 6460;
NIGMS P20 GM103429
PMID:26894997 Free, Available for download, Freely available OMICS_11199, biotools:binpacker http://sourceforge.net/projects/transcriptomeassembly/files/BinPacker_1.0.tar.gz/download, http://sourceforge.net/projects/transcriptomeassembly/files/BinPacker_binary.tar.gz/download, https://bio.tools/binpacker SCR_017038 2026-08-03 09:36:43 10
SnpHub
 
Resource Report
Resource Website
1+ mentions
SnpHub (RRID:SCR_018177) software resource, web application Web Shiny-based server framework for retrieving, analyzing and visualizing large genomic variations data. Genomic, data, data visualization, data analysis, data retrieving, bio.tools is listed by: Debian
is listed by: bio.tools
National Natural Science Foundation of China 31701415;
National Key Research and Development Program of China 2018YFD0100803;
National Key Research and Development Program of China 2016YFD0100801
Free, Available for download, Freely available biotools:SnpHub http://guoweilong.github.io/SnpHub/, https://bio.tools/SnpHub SCR_018177 2026-08-03 09:36:52 1
trRosetta
 
Resource Report
Resource Website
50+ mentions
trRosetta (RRID:SCR_021181) simulation software, service resource, software resource, software application Software tool for fast and accurate protein structure prediction. Builds protein structure based on direct energy minimizations with restrained Rosetta. Restraints include inter-residue distance and orientation distributions, predicted by deep residual neural network. Homologous templates are included in network prediction to improve accuracy for easy targets. protein structure, restraint-guided structure generation, protein structure prediction uses: Rosetta National Natural Science Foundation of China ;
Fok Ying-Tong Education Foundation ;
Key Laboratory for Medical Data Analysis and Statistical Research of Tianjin ;
Thousand Youth Talents Plan of China ;
China Scholarship Council ;
NIGMS R01 GM092802;
NIH Office of the Director DP5 OD026389
PMID:31896580 Free, Freely available https://github.com/gjoni/trRosetta SCR_021181 transformed restrained Rosetta 2026-08-03 09:37:21 67
CIRIquant
 
Resource Report
Resource Website
1+ mentions
CIRIquant (RRID:SCR_021661) software toolkit, software application, data processing software, data analysis software, software resource Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. circRNA quantification, differential expression analysis, RNA-Seq data, circular RNA, circular isoform switching events National Natural Science Foundation of China DOI:10.1038/s41467-019-13840-9 Free, Available for download, Freely available https://sourceforge.net/projects/ciri/files/, https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html# SCR_021661 2026-08-03 09:37:44 1
CIRCexplorer2
 
Resource Report
Resource Website
10+ mentions
CIRCexplorer2 (RRID:SCR_021664) software resource, data processing software, software application, data analysis software Software package for comprehensive and integrative circular RNA analysis. It is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization. Used to annotate circRNAs, de novo assemble novel circular RNA transcripts and chracterize various of alternative (back-)splicing events of circular RNAs. Decipher alternative back splicing, decifer circRNAs splicing pattern, circular RNA analysis, annotate circRNAs National Natural Science Foundation of China ;
Ministry of Science and Technology of China
PMID:27365365
PMID:30539552
Free, Available for download, Freely available SCR_021664 2026-08-03 09:37:44 40
CancerMIRNome
 
Resource Report
Resource Website
10+ mentions
CancerMIRNome (RRID:SCR_022092) web service, database, data access protocol, data or information resource, software resource Web server for cancer miRNome interactive analysis and visualization based on human miRNome data of cancer types from The Cancer Genome Atlas, and public cancer circulating miRNome profiling datasets from NCBI Gene Expression Omnibus and ArrayExpress. Comprehensive database for interactive analysis and visualization of miRNA expression profiles. cancer miRNome interactive analysis, human miRNome data, cancer data, miRNA expression profiles is related to: The Cancer Genome Atlas
is related to: ArrayExpress
Riverside Faculty Start-up Fund ;
UC Cancer Research Coordinating Committee Competition Award ;
UC Academic Senate CoR Research Grant ;
United States Department of Agriculture ;
National Natural Science Foundation of China ;
Science and Technology Project of Guizhou Province
DOI:10.1093/nar/gkab784 Free, Freely available SCR_022092 2026-08-03 09:37:46 24
REST: a toolkit for resting-state fMRI
 
Resource Report
Resource Website
500+ mentions
REST: a toolkit for resting-state fMRI (RRID:SCR_009641) REST image processing software, software toolkit, software application, data processing software, image analysis software, software resource A user-friendly convenient toolkit to calculate Functional Connectivity (FC), Regional Homogeneity (ReHo), Amplitude of Low-Frequency Fluctuation (ALFF), Fractional ALFF (fALFF), Gragner causality and perform statistical analysis. You also can use REST to view your data, perform Monte Carlo simulation similar to AlphaSim in AFNI, calculate your images, regress out covariates, extract Region of Interest (ROI) time courses, reslice images, and sort DICOM files. correlation, cross-correlation, fourier time-domain analysis, gnome, kde, linux, macos, matlab, microsoft, modeling, magnetic resonance, nifti, posix/unix-like, spatial transformation, spectral analysis, statistical operation, temporal transformation, time domain analysis, two dimensional display, visualization, windows, resting-state functional magnetic resonance imaging, resting-state fmri is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Beijing Normal University; Beijing; China
National High Technology Program of China ;
National Natural Science Foundation of China ;
Program for Changjiang Scholars and Innovative Research Team in University
PMID:21949842 Academic Free License nlx_155936 http://www.nitrc.org/projects/rest SCR_009641 Resting-State fMRI Data Analysis Toolkit, REsting State fMRI Data analysis Toolkit 2026-08-03 09:34:09 866
funRiceGenes
 
Resource Report
Resource Website
10+ mentions
funRiceGenes (RRID:SCR_015778) data or information resource, database, data set Dataset of functionally characterized rice genes and members of different gene families. The dataset was created by integrating data from available databases and reviewing publications of rice functional genomic studies. rice, functional genomics, interaction network, genetic improvement, gene, data integration National Key Research and Development Program of China 2016YFD0100903;
National Natural Science Foundation of China 31771873 and National Natural Science Foundation of China;
Outstanding Young Talents Program
Freely available, Public, Available for download, Free https://github.com/venyao/RICENCODE, http://funricegenes.ncpgr.cn/ SCR_015778 RICENCODE 2026-08-03 09:36:26 44
m6ASNP: Annotation of genetic variants by m6A function
 
Resource Report
Resource Website
1+ mentions
m6ASNP: Annotation of genetic variants by m6A function (RRID:SCR_016048) web service, software application, data processing software, data analysis software, data access protocol, software resource, data visualization software Web server implemented in JAVA and PHP for annotating genetic variants by m6A function. It predicts and annotates N6-methyladenosine (m6A) alterations from genetic variants data such as germline SNPs or cancer somatic mutations. It employs two accurate prediction models for human and mouse using Random Forest algorithm. It conducts a statistical analysis for all the predicted m6A alterations. Provides statistical diagrams and a genome browser to visualize the topology characteristics of predicted m6A alterations. N6-methyladenosine (m6A), variant annotation, effect prediction, random forest, miclip, m6a, mutant National Key Research and Development Program 2017YFA0106700;
National Natural Science Foundation of China 31771462;
China Postdoctoral Science Foundation 2017M622864;
Fundamental Research Funds for the Central Universities No. 17lgpy106;
Guangdong Natural Science Foundation 2014TQ01R387
PMID:29617790
DOI:10.1093/gigascience/giy035
Free, Available for download, Freely available https://github.com/RenLabBioinformatics/m6ASNP SCR_016048 m6ASNP 2026-08-03 09:36:17 3
Beijing: Short TR Study
 
Resource Report
Resource Website
1+ mentions
Beijing: Short TR Study (RRID:SCR_003502) Beijing Short TR data or information resource, data set Dataset of resting state fMRI scans obtained using two different TR's in healthy college-aged volunteers. Specifically, for each participant, data is being obtained with a short TR (0.4 seconds) and a long TR (2.0 seconds). In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 8-minute resting-state fMRI scan (TR = 2 seconds, # repetitions = 240) * 8-minute resting-state fMRI scans (TR = 0.4 seconds, # repetitions = 1200) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information nifti, fmri, resting-state fmri, image collection, early adult human, mprage, diffusion tensor imaging, neuroimaging, brain, demographic has parent organization: Beijing Normal University; Beijing; China
has parent organization: 1000 Functional Connectomes Project
Healthy National Natural Science Foundation of China 30770594;
National High Technology Program of China 2008AA02Z405
Creative Commons Attribution-NonCommercial License nlx_157642 SCR_003502 Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Short TR Sample, BNU Short TR Sample 2026-08-03 09:32:09 6
DaTo
 
Resource Report
Resource Website
1+ mentions
DaTo (RRID:SCR_010280) DaTo data or information resource, database A biological database and software tool catalog based on text mined and human annotated url mentions in PubMed abstracts. Data are annotated as to the author''''s country of origin and url status is checked. metadata, catalog, text mining is related to: Cytoscape
is related to: PubMed
has parent organization: Zhejiang University; Zhejiang; China
National Natural Science Foundation of China 30971743;
National Natural Science Foundation of China 31371328
nlx_157296 SCR_010280 DA&TO - The Atlas of biology databases and tools, DAandTO, Da&To 2026-08-03 09:34:25 8
NONCODE
 
Resource Report
Resource Website
100+ mentions
NONCODE (RRID:SCR_007822) data or information resource, database Collection of non-coding RNAs (excluding tRNAs and rRNAs) as an integrated knowledge database. Used to get text information such as class,name,location,related publication,mechanism through which it exerts its function, view figures which show their location in the genome or in a specific DNA fragment, and the regulation elements flanking the ncRNA gene sequences. collection, long, non, coding, RNA, integrated, database, FASEB list has parent organization: Chinese Academy of Sciences; Beijing; China
works with: Genotate
National High Technology Research and Development Program of China ;
Training Program of the Major Research Plan of the National Natural Science Foundation of China ;
National Natural Science Foundation of China ;
Chinese Academy of Science Strategic Project of Leading Science and Technology
PMID:26586799 nif-0000-03195, r3d100012169 http://www.bioinfo.org/noncode/, https://doi.org/10.17616/R3194Q, https://doi.org/10.17616/R3194Q http://bioinfo.ibp.ac.cn/NONCODE/index.htm, http://www.noncode.org/NONCODERv3/ SCR_007822 NONCODE 2016 2026-08-03 09:33:43 475
CellMarker
 
Resource Report
Resource Website
100+ mentions
CellMarker (RRID:SCR_018503) service resource, data or information resource, database Database provides cell markers for various cell types in tissues of human and mouse. Manually curated resource of cell markers in human and mouse. Provides user-friendly interface for browsing, searching and downloading markers of diverse cell types of different tissues. Summarized marker prevalence in each cell type is graphically presented., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. Cell marker, cell type, tissue, graphical presentation, searching data, downloading data, marker, FASEB list has parent organization: Harbin Medical University; Heilongjiang; China National High Technology Research and Development Program of China ;
National Natural Science Foundation of China ;
China Postdoctoral Science Foundation
PMID:30289549 THIS RESOURCE IS NO LONGER IN SERVICE SCR_018503 2026-08-03 09:36:58 485
EVmiRNA
 
Resource Report
Resource Website
1+ mentions
EVmiRNA (RRID:SCR_018795) data or information resource, database Collection of comprehensive miRNA expression profiles in extracellular vesicles from tissues. Includes miRNA expression profiles, miRNA regulated pathways, miRNA function, miRNA related drugs and publications to support miRNA biomarker discovery. miRNA, miRNA expression profile, extracellular vesicle, tissue, miRNA regulated pathway, miRNA function, drug, publication, miRNA biomarker, data National Key Research and Development Program of China ;
National Natural Science Foundation of China ;
China Postdoctoral Science Foundation
PMID:30335161 Free, Freely available SCR_018795 Extracellular Vesicles miRNA Database 2026-08-03 09:37:05 1
Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform
 
Resource Report
Resource Website
100+ mentions
Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (RRID:SCR_023757) TCMSP data or information resource, database Pharmacology platform of Chinese herbal medicines that captures relationships between drugs, targets and diseases. Database includes chemicals, targets and drug-target networks, and associated drug-target-disease networks, as well as pharmacokinetic properties for natural compounds involving oral bioavailability, drug-likeness, intestinal epithelial permeability, blood-brain-barrier, aqueous solubility. Pharmacology platform, Chinese herbal medicines, drugs, targets and diseases, drug-target networks, natural compounds, pharmacokinetic properties, National Natural Science Foundation of China PMID:24735618 Free, Freely available https://tcmsp-e.com/ SCR_023757 TCMSP database 2026-08-03 09:38:13 195
NeuroPep
 
Resource Report
Resource Website
10+ mentions
NeuroPep (RRID:SCR_023102) data or information resource, database Comprehensive resource of neuropeptides, which holds non-redundant neuropeptide entries. Data collected from resources including MEDLINE abstracts, full papers, UniProt,database at www.neuropeptides.nl and Neuropedia. Contains detailed annotations for each entry, including source organisms, tissue specificity, families, names, post-translational modifications, 3D structures and literature references. Amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided. Search database with keywords such as sequence, name, family, etc.,User friendly web tools like browsing, sequence alignment and mapping are also integrated.Users can submit new entries online. Each new entry is validated before incorporating it. neuropeptide database, neuropeptide, non-redundant neuropeptide, National Natural Science Foundation of China ;
Fundamental Research Funds for the Central Universities of China
PMID:25931458 Free, Freely available SCR_023102 2026-08-03 09:38:07 10
OncoboxPD
 
Resource Report
Resource Website
1+ mentions
OncoboxPD (RRID:SCR_023723) data or information resource, database Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, is related to: oncoboxlib
is related to: Gene Ontology
Russian Science Foundation ;
National Natural Science Foundation of China ;
Qingdao Key Research Project ;
Qingdao Key Health Discipline Development Fund
PMID:35615022 Free, Freely available SCR_023723 Oncobox Pathway Databank 2026-08-03 09:38:29 3
Brassicaceae Database
 
Resource Report
Resource Website
100+ mentions
Brassicaceae Database (RRID:SCR_023019) BRAD data or information resource, database Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes. genome sequences, Brassiceae species, published genomic data, syntenic genes, National Programon Key Research Project ;
National Natural Science Foundation of China
DOI:10.1093/nar/gkab1057 Free, Freely available SCR_023019 2026-08-03 09:37:52 291
Human Protein-Protein Interaction Mining Tool
 
Resource Report
Resource Website
1+ mentions
Human Protein-Protein Interaction Mining Tool (RRID:SCR_008040) text-mining software, software resource, software application Web-based tool used to mine human protein-protein interactions (PPIs) from PubMed abstracts based on their co-occurrences and interaction words, followed by evidencs in human PPI databases and shared terms in GO database. protein-protein interaction, pubmed, text mining is listed by: 3DVC
has parent organization: Chinese Academy of Sciences; Beijing; China
Hi-Tech Research and Development Program of China 2006AA02Z322;
National Natural Science Foundation of China 30525007;
National Natural Science Foundation of China 30730049;
National Basic Research Program of China 2006CB504100;
National Basic Research Program of China 2006CB500700;
National Basic Research Program of China 2007CB947200
nif-0000-10256 SCR_008040 PPI Finder 2026-08-03 09:33:38 1
PhaSeDis
 
Resource Report
Resource Website
1+ mentions
PhaSeDis (RRID:SCR_024963) data or information resource, database Manually curated database of relations between phase separation and diseases. Manually curated database, relations between phase separation and diseases, National Key Research and Development Program of China ;
National Natural Science Foundation of China
PMID:33126250 Free, Freely available SCR_024963 MloDisDB 2026-08-03 09:38:23 4

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.