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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
InnoCentive Resource Report Resource Website 1+ mentions |
InnoCentive (RRID:SCR_013851) | people resource, software resource | A global network group resource which provides crowdsourcing services for “innovation solutions.” InnoCentive utilizes an innovation framework, called Challenge Drive Innovation, which is based on leveraging open innovation and crowdsourcing. Software tools are available for idea management, innovation management, and external crowdsourcing programs and competitions. | group, crowdsourcing, Challenge Drive Innovation, software, tools, idea management |
is used by: Scientific American is listed by: Connected Researchers is related to: Connected Researchers |
Must pay for resource | SCR_013851 | 2025-05-07 11:54:57 | 8 | ||||||||||
|
Wiki Journal Club Resource Report Resource Website |
Wiki Journal Club (RRID:SCR_013783) | WJC | information resource, software resource | A database which holds summaries of landmark clinical trials. The topics of contributed articles range across various biomedical fields and disciplines such as immunology, nephrology, and urology. | database, clinical trials, article |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_013783 | 2025-05-07 11:54:55 | 0 | |||||||||
|
Data Elixir Resource Report Resource Website |
Data Elixir (RRID:SCR_013762) | information resource, software resource | A web-based information resource providing current news and resources relevant to data science. Users can subscribe to the weekly newsletter by providing an email address or visit the site. The site displays the current week's news and houses an archive of their past newsletters. | web application, newsletter, data science, resources, current events |
is listed by: Connected Researchers is related to: Connected Researchers |
free, public | SCR_013762 | 2025-05-07 11:54:55 | 0 | ||||||||||
|
Duke Human Heart Repository Resource Report Resource Website 50+ mentions |
Duke Human Heart Repository (RRID:SCR_013980) | material resource, biomaterial supply resource | A biomaterial supply resource which collects and disseminates human heart tissue. Samples include both failing and non-failing hearts, RNA/DNA analysis, tissue staining and immunofluorescence samples.The tissue that has been flash frozen and stored at -80˚C is acquired from distinct regions of the heart such as the LV free wall, septum, and valve leaflets. Individual sample sizes are typically 100-300mg for flash frozen tissues. The DHHR also serves as a resource for assay development, target identification, and sponsored research, capable of isolating cardiomyocytes from hearts and using them for in-vitro assays such as calcium handling, enzyme activity, signalling pathways and other biochemical research activities | biomaterial supply resource, human heart, human heart tissue, cardiovascular, tissue, tissue sample |
lists: American Heart Association lists: ASPET lists: Duke Biobank lists: International Society for Biological and Environmental Repositories lists: American Society for Cell Biology is listed by: Connected Researchers is related to: Connected Researchers has parent organization: Duke University; North Carolina; USA |
Free, Available to the research community | SCR_013980 | 2025-05-08 11:00:52 | 88 | ||||||||||
|
TetraScience Resource Report Resource Website |
TetraScience (RRID:SCR_013977) | data processing software, data management software, data acquisition software, software resource, software application | A software provider which supplies researchers with software that enables remote monitoring and management of experiments. TetraScience provides software for managing lab cameras, sensors, electrical switches, adapters, and timers. Users are notified by text or email of lab proceedings and alerts. | remote management, management tool, data aacquisiton, data management, software |
is listed by: Connected Researchers is related to: Connected Researchers |
SCR_013977 | 2025-05-12 11:15:17 | 0 | |||||||||||
|
Collage Authoring Environment Resource Report Resource Website 1+ mentions |
Collage Authoring Environment (RRID:SCR_014008) | software resource, web application | A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site. | web applicaiton, computational experiment, executable paper, collaboration, publication |
is listed by: Connected Researchers is related to: Article of the Future is related to: Connected Researchers has parent organization: Elsevier |
Account required | SCR_014008 | Collage Authoring Environment for Executable Publications | 2025-05-12 11:15:14 | 2 | |||||||||
|
RunMyCode Resource Report Resource Website 1+ mentions |
RunMyCode (RRID:SCR_014011) | storage service resource, data or information resource, database, service resource | A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode. | database, storage service resource, companion website, code |
is listed by: Connected Researchers is related to: Exec&Share is related to: Exec&Share is related to: Connected Researchers |
Alfred P. Sloan Foundation ; HEC Paris ; National Center for Scientific Research ; University of Orleans ; COlumbia University |
Free, Public, The community can contribute to this resource | SCR_014011 | 2025-05-12 11:15:13 | 4 | |||||||||
|
JournalReviewer Resource Report Resource Website |
JournalReviewer (RRID:SCR_014014) | software resource, collaboration tool, data or information resource, database | A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014014 | 2025-05-12 11:15:13 | 0 | ||||||||||
|
Wiley Smart Article Resource Report Resource Website |
Wiley Smart Article (RRID:SCR_013817) | software resource, web application | A web application which provides article tools specifically for the chemistry journals Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, and Journal of Physical Organic Chemistry. The addition of Smart Article to these journals allows researchers to search across all five journals and to index and browse facilities for detailed information on compounds. | web application, Wiley, article, tool, Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, Journal of Physical Organic Chemistry |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013817 | Smart Article | 2025-05-12 11:15:10 | 0 | |||||||||
|
Article of the Future Resource Report Resource Website |
Article of the Future (RRID:SCR_013812) | software resource, web application | A web application which provides interactive and in depth reading of online scientific articles published in Elsevier. While reading an article, users can access interactive data sources such as Protein Viewer and Google Maps as well as links to references and databases. Prototypes for seven different scientific areas are currently available for more specific research, but all scientific disciplines are represented within Article of the Future. | web application, research, article, tool, interactive |
is listed by: Connected Researchers is related to: Elsevier is related to: Elsevier is related to: Collage Authoring Environment is related to: Connected Researchers has parent organization: Elsevier |
Free, Public | SCR_013812 | Elsevier - Article of the Future | 2025-05-12 11:15:10 | 0 | |||||||||
|
PubReader Resource Report Resource Website 1+ mentions |
PubReader (RRID:SCR_013814) | software resource, web application | A web application which serves as an alternate way to read scientific literature in PubMed Central and Bookshelf. PubReader features an easy-to-read multi-column display, a figure strip for access to figures, and a search function. It is designed especially to support reading on tablets and other smaller devices but is available for reading on laptops and desktops. | web application, literature, tablet, mobile device |
is used by: PubMed Central is used by: Bookshelf is listed by: Connected Researchers is related to: NCBI is related to: PubMed Central is related to: Bookshelf is related to: Connected Researchers has parent organization: NCBI |
NIH ; NLM ; United States Department of Health and Human Services ; U.S. Government |
Free, Public | SCR_013814 | 2025-05-12 11:15:10 | 1 | |||||||||
|
Wiley Anywhere Article Resource Report Resource Website |
Wiley Anywhere Article (RRID:SCR_013816) | software resource, web application | A web application which enhances online reading of articles from the Wiley Online Library. Wiley Anywhere Article is an alternate HTML version of articles found on the Wiley Online Library that is supported on all desktop, tablet, and mobile devices. Readers have access to sidebar and tray functions which display references, figures, and other important information while keeping their place in the article. | web application, article, Wiley Online Library |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013816 | Anywhere Article | 2025-05-12 11:15:10 | 0 | |||||||||
|
Paperpile Resource Report Resource Website 1+ mentions |
Paperpile (RRID:SCR_014002) | software resource, web application | A web application which allows users to find reference papers and cite them during the authoring process. Paperpile utilizes Google and Chrome apps in order to directly download PDFs from various databases to Google Drive. If writing in Google Docs, users can search for certain reference papers and insert them into their draft as citations using the Google Drive Paperpile tool. Users can also collaborate on papers and add different citations. | software application, bibliography, authoring, reference management |
uses: Google Docs is used by: Harvard University; Cambridge; United States is used by: Massachusetts Institute of Technology; Massachusetts; USA; is used by: University of California at Berkeley; Berkeley; USA is used by: Duke University; North Carolina; USA is used by: University of Cambridge; Cambridge; United Kingdom is used by: Imperial College London; London; United Kingdom is used by: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is used by: Max-Planck-Gesellschaft is listed by: Connected Researchers is related to: Google Docs is related to: Connected Researchers |
Fee (for different packages) per month | SCR_014002 | 2025-05-12 11:15:14 | 4 | ||||||||||
|
Poetica Resource Report Resource Website |
Poetica (RRID:SCR_014005) | software resource, web application | A web-based authoring platform for Wordpress which allows users to write, edit, and track changes and revisions. Users can see all revisions and edits to an artcle and decide which ones may be kept or reverted. After creating an article, users can upload it directly to WordPress. | authoring tool, revision control, Markdown |
is listed by: Connected Researchers is related to: WordPress is related to: Connected Researchers |
Account required, free | SCR_014005 | 2025-05-12 11:15:14 | 0 | ||||||||||
|
WebPlotDigitizer Resource Report Resource Website 1000+ mentions |
WebPlotDigitizer (RRID:SCR_013996) | software resource, data access protocol, service resource, web service | Web based tool to extract data from plots, images, and maps. HTML5 based online tool to extract numerical data from plot images. Used to reverse engineer images of data visualizations to extract underlying numerical data. | Data extraction, plot, image, map, HTML5, numerical data extraction, plot image, reverse image, reverse data visualization |
is listed by: SoftCite is related to: Connected Researchers |
Free, Available for download, Freely available | https://apps.automeris.io/wpd/ https://github.com/ankitrohatgi/WebPlotDigitizer https://github.com/ankitrohatgi/WebPlotDigitizer/releases |
http://arohatgi.info/WebPlotDigitizer/ | SCR_013996 | WebPlotDigitizer Version 4.1, WebPlotDigitizer Version 4.2 | 2025-05-12 11:15:15 | 1351 | |||||||
|
eLife Lens Resource Report Resource Website |
eLife Lens (RRID:SCR_013809) | software resource, web application | A web application which modifies the online use of scientific articles published in eLife. eLife Lens is a tool created by eLife that enables users to explore figures, figure descriptions, and references while keeping their place in the article text. Users can search for papers by subject, organism, article type, and/or top authors. | web application, article, tool |
is listed by: Connected Researchers is related to: Connected Researchers is related to: eLife has parent organization: eLife |
Free, Public | http://elifesciences.org/elife-news/lens | SCR_013809 | 2025-05-12 11:15:10 | 0 | |||||||||
|
StatCrunch Resource Report Resource Website 10+ mentions |
StatCrunch (RRID:SCR_013992) | software resource, data or information resource, web application | A web application which allows users to collect data, perform complex analyses, and generate results. Users can upload data sets from their computer or from the internet for data analysis and graph creation which can be saved, printed, and downloaded. More than 15,000 statistical data sets are available. | web application, statistics, data analysis, data set, graph |
is listed by: Connected Researchers is related to: Connected Researchers |
The community can contribute to this resource | SCR_013992 | 2025-05-12 11:15:15 | 10 | ||||||||||
|
Wakari Resource Report Resource Website 1+ mentions |
Wakari (RRID:SCR_013995) | software resource, web application | A web application which performs Python data analysis. Users can create IPython notebooks to hold uploaded data and use various tools to describe, analyze, and visualize the data. Notebooks, data, and Anaconda environments can be shared as "bundles" with other users, who can edit and download them. | web application, data analysis, Python data analysis, visualization |
uses: IPython Notebook is listed by: Connected Researchers is related to: Connected Researchers is related to: IPython Notebook |
Free, Fee (for different packages) | SCR_013995 | 2025-05-12 11:15:15 | 1 | ||||||||||
|
Academic Karma Resource Report Resource Website 1+ mentions |
Academic Karma (RRID:SCR_014017) | production service resource, service resource | A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work. | peer review, peer review management, service resource, prodution service resource |
uses: ORCID - Open Researcher and Contributor ID is listed by: Connected Researchers is related to: Connected Researchers is related to: ORCID - Open Researcher and Contributor ID |
Free, Available to the research community | SCR_014017 | 2025-05-12 11:15:18 | 1 | ||||||||||
|
Journalysis Resource Report Resource Website |
Journalysis (RRID:SCR_014015) | software resource, collaboration tool, data or information resource, database | A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014015 | 2025-05-12 11:15:18 | 0 |
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