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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://cran.r-project.org/web/packages/ggrastr/index.html
Software R package to Rasterize Layers for ggplot2.
Proper citation: ggrastr (RRID:SCR_024825) Copy
https://github.com/sinhrks/ggfortify
Software tool as unified interface to visualize statistical results of popular R packages. Provides unified interface that enables users to use one line of code to visualize statistical results of many R packages using ggplot2 idioms. Allows ggplot2 to handle some popular R packages.
Proper citation: ggfortify (RRID:SCR_024888) Copy
http://mjskay.github.io/tidybayes/
Software R package to integrate popular Bayesian modeling methods into tidy data plus ggplot workflow.
Proper citation: tidybayes (RRID:SCR_024889) Copy
Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
Proper citation: Debian (RRID:SCR_006638) Copy
https://huygens.science.uva.nl/PlotsOfData/
Web app for visualizing data together with their summaries. Visualizes data and statistics to enable comparison of experimental conditions. Written in R and uses packages including shiny, ggplot2, dplyr, tidyr, readr, magrittr, ggbeeswarm, readxl, DT. Github page of PlotsOfData can be used to trace changes between different versions.
Proper citation: PlotsOfData (RRID:SCR_018333) Copy
https://bioconductor.org/packages/EnhancedVolcano/
Software R package to produce publication ready volcano plots with enhanced colouring and labeling. Used to visualise results of differential expression analyses.
Proper citation: EnhancedVolcano (RRID:SCR_018931) Copy
https://cran.r-project.org/package=ggrepel
Software tool to provide text and label geoms for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from data points.
Proper citation: ggrepel (RRID:SCR_017393) Copy
https://CRAN.R-project.org/package=ggpubr
Software R package provides functions for creating and customizing ggplot2 based publication ready plots.Used for creation of ggplot2 based graphs.
Proper citation: ggpubr (RRID:SCR_021139) Copy
Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.
Proper citation: bio.tools (RRID:SCR_014695) Copy
https://CRAN.R-project.org/package=metaviz
Software R package to create plots of meta-analytic data. Used to create forest plots, funnel plots, and their variants, such as rainforest plots, thick forest plots, additional evidence contour funnel plots, and sunset funnel plots. In addition, functionalities for visual inference with funnel plot in context of meta-analysis are provided.
Proper citation: metaviz (RRID:SCR_025424) Copy
https://github.com/ggobi/ggally
Software R package that extends ggplot2 by adding several functions to reduce complexity of combining geoms with transformed data. Some of these functions include pairwise plot matrix, scatterplot plot matrix, parallel coordinates plot, survival plot, and several functions to plot networks.
Proper citation: GGally (RRID:SCR_026114) Copy
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