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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BonVision Resource Report Resource Website 1+ mentions |
BonVision (RRID:SCR_021534) | software toolkit, software resource | Open source software package for creating and controlling visual environments.Software package for Bonsai which allows for control of 2D and 3D environments. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision project |
DOI:10.1101/2020.03.09.983775 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonvision/ | SCR_021534 | 2026-08-02 09:08:18 | 1 | ||||||||
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Pi-based Remote Acquisition Technology for Motion Capture Resource Report Resource Website 1+ mentions |
Pi-based Remote Acquisition Technology for Motion Capture (RRID:SCR_022327) | PiRATeMC | software toolkit, software resource | Software data management pipeline for camera synchronization and combined data directories. | OpenBehavior, camera synchronization, combined data directories, data management |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture project |
DOI:10.1101/2021.07.23.453577 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/piratemc/ | SCR_022327 | 2026-08-02 09:08:31 | 1 | |||||||
|
AutoPilot Resource Report Resource Website 1+ mentions |
AutoPilot (RRID:SCR_021518) | software toolkit, software resource | Software tool as open source Python framework for behavioral neuroscience that distributes experiments over networked swarms of Raspberry Pis. Toolkit of flexible modules to design experiments without rigid programming and API limitations. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot project |
DOI:10.1101/807693 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autopilot/ | SCR_021518 | Autopilot | 2026-08-02 09:08:12 | 1 | |||||||
|
DeepPoseKit Resource Report Resource Website 1+ mentions |
DeepPoseKit (RRID:SCR_021405) | software toolkit, software resource | Software toolkit with high level API for 2D pose estimation of user defined keypoints using deep learning.Written in Python and built using Tensorflow and Keras.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior. | 2D pose estimation, animal pose estimation, animal behavior, DeepLabCut, Leap, OpenBehavior |
is listed by: OpenBehavior is related to: DeepPoseKit project |
DOI:10.7554/elife.47994 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepposekit/ | SCR_021405 | 2026-08-02 09:08:15 | 2 | ||||||||
|
DeepSqueak Resource Report Resource Website 10+ mentions |
DeepSqueak (RRID:SCR_021524) | software toolkit, software resource | Software MATLAB package for high throughput ultrasonic vocalizations detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak project |
DOI:10.1038/s41386-018-0303-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepsqueak/ | SCR_021524 | 2026-08-02 09:08:13 | 10 | ||||||||
|
Anipose Resource Report Resource Website 1+ mentions |
Anipose (RRID:SCR_023041) | software toolkit, software resource | Software package for 3D pose estimation. Uses DeepLabCut for 2D tracking and uses triangulation methods to project pose estimations into three dimensions.Toolkit for robust markerless 3D pose estimation. | OpenBehavior, 3D pose estimation, project pose estimations into three dimensions, markerless 3D pose estimation |
uses: DeepLabCut is listed by: OpenBehavior is related to: DeepLabCut Project |
NINDS F31NS115477; NINDS R00 NS088193; NINDS DP2NS105555; NINDS R01NS111479; NINDS U19NS112959; Searle Scholars Program ; Pew Charitable Trusts ; McKnight Foundation ; Sloan Research Fellowship ; Washington Research Foundation ; NINDS R01NS102333; NINDS U19NS104655; New York Stem Cell Foundation |
PMID:34592148 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=Anipose | SCR_023041 | 2026-08-02 09:08:35 | 4 | |||||||
|
Mouse Behavioral Analysis Toolbox Resource Report Resource Website 1+ mentions |
Mouse Behavioral Analysis Toolbox (RRID:SCR_023291) | MouBeAT | software toolkit, software resource | Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). | OpenBehavior, behavioral tests, behavioral tests analysis, tests in rodents |
uses: ImageJ is listed by: OpenBehavior |
Ministry of Science and Innovation ; Spain ; European Regional Development Fund |
PMID:30245618 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/moubeat/ | SCR_023291 | 2026-08-02 09:08:43 | 1 | ||||||
|
Rtrack Resource Report Resource Website |
Rtrack (RRID:SCR_023025) | software toolkit, software resource | Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video. | OpenBehavior, process raw spatial tracking data, calculate behavioural strategies, spatial tracking experiments, Morris water maze |
is listed by: OpenBehavior is listed by: CRAN |
DOI:10.1101/2020.02.27.967372v1.full.pdf | Free, Available for download, Freely available | https://rupertoverall.net/Rtrack/, https://edspace.american.edu/openbehavior/?s=Rtrack | SCR_023025 | 2026-08-02 09:08:36 | 0 | ||||||||
|
Rasberry rat Resource Report Resource Website 1+ mentions |
Rasberry rat (RRID:SCR_023467) | software resource, software repository | Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions. | recording, converting, uploading, videos, video recordings, seting up and recording home cage videos, OpenBehavior, | is listed by: OpenBehavior | https://edspace.american.edu/openbehavior/project/raspberry_rat/, https://github.com/lapphe/raspberry_rat/wiki | SCR_023467 | Rasberry_rat | 2026-08-02 09:08:46 | 3 | |||||||||
|
FaceSync Resource Report Resource Website |
FaceSync (RRID:SCR_021396) | software toolkit, software resource | Open source software Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.Framework for recording facial expressions with head mounted cameras. | Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools |
is listed by: OpenBehavior is related to: FaceSync project |
PMID:32185017 | Free, Available for download, Freely Available | biotools:FaceSync | https://edspace.american.edu/openbehavior/project/facesync/, https://bio.tools/FaceSync | SCR_021396 | 2026-08-02 09:08:14 | 0 | |||||||
|
D-Track Resource Report Resource Website |
D-Track (RRID:SCR_021394) | software toolkit, software resource | Software package to track object in 3D based on 3D schematics of scene.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. | Object tracking, track aquatic animals, dolphin tracker, 3D video tracking, analyse movements, OpenBehavior |
is listed by: OpenBehavior is related to: D-Track project |
DOI:10.1371/journal.pone.0201614 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/d-track/ | SCR_021394 | 2026-08-02 09:08:14 | 0 | ||||||||
|
ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | software resource, source code, instrument resource | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-08-02 09:09:21 | 14 | ||||||
|
Active Commutator Resource Report Resource Website |
Active Commutator (RRID:SCR_027098) | software resource, source code, instrument resource | Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation. | OpenBehavior, device, commutator, neuroscience, electrophysiology system, freely moving subjects, flexible operation, | is listed by: OpenBehavior | Free, Available for download, Freely available | SCR_027098 | 2026-08-02 09:09:35 | 0 | ||||||||||
|
Feeding Experimentation Device project Resource Report Resource Website 1+ mentions |
Feeding Experimentation Device project (RRID:SCR_015942) | FED | topical portal, data or information resource, portal | Flexible open-source device for measuring feeding behavior. FED measures food intake in mice. It is battery powered and designed to be used in rodent colony caging.Home cage-compatible feeding system that measures food intake with high accuracy and temporal resolution. FED offers alternative to commercial feeders, with convenience of use in tradition colony rack caging. | Feeding, food intake, optogenetic, behavioral data analysis, data analysis software, behavior apparatus, behavior rig, reward delivery, behavior measurement, homecage, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: Washington University in St. Louis; Missouri; USA |
NIH | PMID:27060385 | Commercially available | https://github.com/KravitzLab/FED1, https://edspace.american.edu/openbehavior/project/feeding-experimentation-device/, https://hackaday.io/project/72964-feeding-experimentation-device-fed-20 | SCR_015942 | , FED1, FED2, Feeding Experimentation Device system, Feeding Experimentation Device | 2026-08-03 09:36:15 | 1 | |||||
|
Eco-HAB Resource Report Resource Website |
Eco-HAB (RRID:SCR_021588) | portal, data or information resource, project portal, instrument resource | Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists. | Instrument, murine social behavior, automated measurement, mice social preference, mice cohort sociability, social preference analysis, OpenBehavior |
is listed by: OpenBehavior has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
DOI:10.7554/elife.19532 | Free, Freely available | SCR_021588 | 2026-08-03 09:37:25 | 0 | |||||||||
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Oculomatic Eye Tracking project Resource Report Resource Website |
Oculomatic Eye Tracking project (RRID:SCR_021465) | portal, data or information resource, project portal, instrument resource | Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Oculomatic has parent organization: New York University; New York; USA |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Freely available | SCR_021465 | Oculomatic Eye Tracking | 2026-08-03 09:37:39 | 0 | ||||||||
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M-Track Resource Report Resource Website |
M-Track (RRID:SCR_021508) | software toolkit, software application, data processing software, image analysis software, software resource | Software toolbox for automated detection of forepaw trajectories in mice.Open source code to simultaneously track movement of individual paws during spontaneous grooming episodes and walking in multiple freely behaving mice/rats. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track project |
DOI:10.1371/journal.pcbi.1005115 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/m-track/ | SCR_021508 | 2026-08-03 09:37:40 | 0 | ||||||||
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Moving Wall Box Resource Report Resource Website |
Moving Wall Box (RRID:SCR_021559) | portal, data or information resource, project portal, instrument resource | Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies. | Instrument, behavioral inhibition, emotional challenging situation, OpenBehavior |
is listed by: OpenBehavior has parent organization: Max-Planck-Gesellschaft |
DOI:10.3389/fnbeh.2017.00201 | Free, Freely available | SCR_021559 | 2026-08-03 09:37:41 | 0 | |||||||||
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EZcalcium Resource Report Resource Website 1+ mentions |
EZcalcium (RRID:SCR_022354) | software resource, data processing software, software application, data analysis software | Software package for MATLAB that makes motion correction, segmentation, signal extraction and dimension reduction, analysis, and visualization of calcium imaging data easy to implement. Open source toolbox for analysis of calcium imaging data. | OpenBehavior, neural signal analysis, neural recording, optical imaging, analyze calcium imaging data |
is listed by: OpenBehavior has parent organization: David Geffen School of Medicine at UCLA; California; USA |
DOI:10.3389/fncir.2020.00025 | Free, Available for download, Freely available | https://github.com/porteralab/EZcalcium | SCR_022354 | 2026-08-03 09:37:53 | 1 | ||||||||
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GuPPy Resource Report Resource Website 10+ mentions |
GuPPy (RRID:SCR_022353) | software resource, data processing software, software application, data analysis software | Software Python toolbox that makes fiber photometry data analysis intuitive and light on programming.Used to measure neural activity of freely behaving animals. | OpenBehavior, photometry analysis, neural activity measure, freely behaving animals |
is listed by: OpenBehavior has parent organization: Northwestern University Feinberg School of Medicine; Illinois; USA |
DOI:10.1038/s41598-021-03626-9 | https://github.com/LernerLab/GuPPy | SCR_022353 | Guided Photometry Analysis in Python | 2026-08-03 09:37:38 | 15 |
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