Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
annotate Resource Report Resource Website |
annotate (RRID:SCR_024221) | software toolkit, software resource | Software R package for using R enviroments for annotation. | R enviroments, annotation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-annotate/ | SCR_024221 | 2026-08-09 09:08:59 | 0 | |||||||||
|
altcdfenvs Resource Report Resource Website |
altcdfenvs (RRID:SCR_024225) | software toolkit, software resource | Software R package contains convenience data structures and functions to handle cdfenvs. | convenience data structures and functions, handle cdfenvs, | is listed by: Debian | PMID:15310390 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-altcdfenvs/ | SCR_024225 | alternative CDF environments | 2026-08-09 09:08:49 | 0 | |||||||
|
epibasix Resource Report Resource Website |
epibasix (RRID:SCR_024275) | software toolkit, software resource | Software R package for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement. | epidemiological problems analysis, sample size estimation, contingency table analysis, basic measures of agreement, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-epibasix/ | SCR_024275 | epibasix: Elementary Epidemiological Functions for Epidemiology and Biostatistics, r-cran-epibasix | 2026-08-09 09:09:01 | 0 | ||||||||
|
incidence Resource Report Resource Website |
incidence (RRID:SCR_024276) | software toolkit, software resource | Software R package provides functions and classes to compute, handle and visualise incidence from dated events for defined time interval. Dates can be provided in various standard formats. | compute incidence, handle incidence, visualise incidence, dated events, defined time interval, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-incidence/ | SCR_024276 | 2026-08-09 09:08:50 | 0 | |||||||||
|
biwt Resource Report Resource Website |
biwt (RRID:SCR_024271) | software toolkit, software resource | Software R package for compute multivariate location, scale, and correlation estimates based on Tukey's biweight M-estimator. | compute multivariate location, scale and correlation estimates, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-biwt/ | SCR_024271 | biwt: Compute the Biweight Mean Vector and Covariance & Correlation Matrice, r-cran-biwt | 2026-08-09 09:08:25 | 0 | ||||||||
|
Epi Resource Report Resource Website 1+ mentions |
Epi (RRID:SCR_024272) | software toolkit, software resource | Software R package provides functions for demographic and epidemiological analysis in Lexis diagram, i.e. register and cohort follow-up data. In particular representation, manipulation, rate estimation and simulation for multistate data - the Lexis suite of functions, which includes interfaces to 'mstate', 'etm' and 'cmprsk' packages. Contains functions for Age-Period-Cohort and Lee-Carter modeling and function for interval censored data and some useful functions for tabulation and plotting, as well as number of epidemiological data sets. | demographic and epidemiological analysis in Lexis diagram, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-epi/ | SCR_024272 | r-cran-epi, Epi: Statistical Analysis in Epidemiology | 2026-08-09 09:09:01 | 1 | ||||||||
|
preprocesscore Resource Report Resource Website 50+ mentions |
preprocesscore (RRID:SCR_024254) | software toolkit, software resource | Software library of core preprocessing routines. | core preprocessing routines, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-preprocesscore/ | SCR_024254 | 2026-08-09 09:09:00 | 63 | |||||||||
|
qusage Resource Report Resource Website 1+ mentions |
qusage (RRID:SCR_024255) | software toolkit, software resource | Software R package is implementation Quantitative Set Analysis for Gene Expression method. Used to provide faster, more accurate, and easier to understand test for gene expression studies. | test for gene expression studies, | is listed by: Debian | PMID:23921631 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-qusage/ | SCR_024255 | Quantitative Set Analysis for Gene Expression | 2026-08-09 09:08:50 | 3 | |||||||
|
rsamtools Resource Report Resource Website 50+ mentions |
rsamtools (RRID:SCR_024257) | software toolkit, software resource | Software R package provides interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating Sequence Alignment Map, FASTA, binary variant call and compressed indexed tab-delimited files. | tabix interface, samtools interface, bcftools interface, Sequence Alignment Map manipulation, SAM manipulation, FASTA manipulation, binary variant call manipulation, compressed indexed tab delimited files manipulation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-rsamtools/ | SCR_024257 | 2026-08-09 09:09:00 | 61 | |||||||||
|
savr Resource Report Resource Website |
savr (RRID:SCR_024258) | software toolkit, software resource | Software R package to parse Illumina Sequence Analysis Viewer files, access data, and generate QC plots. | parse Illumina Sequence Analysis Viewer files, access data, generate QC plots, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_15992 | https://sources.debian.org/src/r-bioc-savr/ | SCR_024258 | 2026-08-09 09:08:50 | 0 | ||||||||
|
nanostringqcpro Resource Report Resource Website 1+ mentions |
nanostringqcpro (RRID:SCR_024250) | software toolkit, software resource | Software R package to assess quality of NanoString mRNA gene expression data, to identify outlier probes and outlier samples. Provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and easily sharable html quality control output. | assess quality of NanoString mRNA gene expression data, identify outlier probes and outlier samples, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-nanostringqcpro/ | SCR_024250 | 2026-08-09 09:08:25 | 7 | |||||||||
|
pwmenrich Resource Report Resource Website 1+ mentions |
pwmenrich (RRID:SCR_024249) | software toolkit, software resource | Software toolkit of high level functions for DNA motif scanning and enrichment analysis built upon Biostrings. Used for PWM enrichment analysis of already known PWMs. Also implements high-level functions for PWM scanning and visualisation. | DNA motif scanning and enrichment analysis, Biostrings, PWM enrichment analysis, PWM scanning and visualisation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-pwmenrich/ | SCR_024249 | 2026-08-09 09:08:50 | 3 | |||||||||
|
xvector Resource Report Resource Website |
xvector (RRID:SCR_024263) | software toolkit, software resource | Software R package provides memory efficient S4 classes for storing sequences externally. | provides memory efficient S4 classes, storing sequences externally, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-bioc-xvector/ | SCR_024263 | 2026-08-09 09:09:01 | 0 | |||||||||
|
BoolNet Resource Report Resource Website 1+ mentions |
BoolNet (RRID:SCR_024264) | software toolkit, software resource | Software R package provides functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks. | reconstruct, generate, simulate, synchronous, asynchronous, probabilistic, temporal, Boolean networks, | is listed by: Debian | PMID:20378558 | Free, Available for download, Freely available, | OMICS_06963 | https://sources.debian.org/src/r-cran-boolnet/ | SCR_024264 | BoolNet: Construction, Simulation and Analysis of Boolean Networks, r-cran-boolnet | 2026-08-09 09:08:50 | 2 | ||||||
|
cmprsk Resource Report Resource Website 1+ mentions |
cmprsk (RRID:SCR_024265) | software toolkit, software resource | Software R package for estimation, testing and regression modeling of subdistribution functions in competing risks. | estimation, testing, regression modeling, subdistribution functions in competing risks, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-cmprsk/ | SCR_024265 | cmprsk: Subdistribution Analysis of Competing Risks, r-cran-cmprsk | 2026-08-09 09:08:25 | 3 | ||||||||
|
bio3d Resource Report Resource Website 100+ mentions |
bio3d (RRID:SCR_024266) | software toolkit, software resource | Softwar R package for comparative analysis of protein structures. Used to process, organize and explore protein structure, sequence and dynamics data. Used to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. Enables statistical and graphical power of R environment to work with biological sequence and structural data. | comparative analysis of protein structures, process protein structure, organize and explore protein structure, sequence and dynamics data, | is listed by: Debian | PMID:16940322 | Free, Available for download, Freely available, | OMICS_12577 | https://sources.debian.org/src/r-cran-bio3d/ | SCR_024266 | r-cran-bio3d, bio3d: Biological Structure Analysis | 2026-08-09 09:09:01 | 341 | ||||||
|
DoseFinding Resource Report Resource Website 1+ mentions |
DoseFinding (RRID:SCR_024268) | software toolkit, software resource | Software R package provides functions for design and analysis of dose finding experiments. Used for multiple contrast tests, fitting non-linear dose-response models, calculating optimal designs and implementation of MCPMod methodology. | dose finding experiments design and analysis functions, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-dosefinding/ | SCR_024268 | DoseFinding: Planning and Analyzing Dose Finding Experiments, r-cran-dosefinding | 2026-08-09 09:08:25 | 1 | ||||||||
|
distory Resource Report Resource Website |
distory (RRID:SCR_024269) | software toolkit, software resource | Software R package for geodesic distance between phylogenetic trees and associated functions. | geodesic distance, phylogenetic trees, associated functions, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_33012 | https://sources.debian.org/src/r-cran-distory/ | SCR_024269 | distory: Distance Between Phylogenetic Histories, r-cran-distory | 2026-08-09 09:09:01 | 0 | |||||||
|
alakazam Resource Report Resource Website 1+ mentions |
alakazam (RRID:SCR_024261) | software toolkit, software resource | Software R package for high-throughput adaptive immune receptor repertoire sequencing analysis. In particular, immunoglobulin sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. | high throughput adaptive immune receptor repertoire sequencing analysis, sequencing analysis, | is listed by: Debian | PMID:26069265 | Free, Available for download, Freely available, | OMICS_21399 | https://sources.debian.org/src/r-cran-alakazam/ | SCR_024261 | 2026-08-09 09:08:50 | 6 | |||||||
|
ade4 Resource Report Resource Website 10+ mentions |
ade4 (RRID:SCR_024259) | software toolkit, software resource | Software R package for multivariate data analysis. Used for analysis of one-table, two-table, three-table and K-table. | multivariate data analysis, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-ade4/ | SCR_024259 | 2026-08-09 09:08:25 | 20 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
