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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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hMRI-toolbox Resource Report Resource Website 10+ mentions |
hMRI-toolbox (RRID:SCR_017682) | software toolkit, software resource, software application, data processing software | Software toolbox for quantitative MRI in neuroscience and clinical research. Open source and flexible tool for qMRI data handling and processing. Allows estimation of high quality multi parameter qMRI maps followed by spatial registration in common space for statistical analysis. | Quantitative, MRI, data, processing, multi, parameter, qMRI, map, spatial, registration, statistical, analysis, histology, longitudinal, relaxation, rate R1 and R2, proton, density, magnetisation, transfer, MT saturation |
is related to: MATLAB is related to: SPM |
European Structural and Investment Fund ; European Regional Development Fund ; Belgian Walloon Government ; European Research Council ; Swiss State Secretariat for Education ; Research and Innovation ; German Research Foundation ; Swiss National Science Foundation ; Leenaards Foundation ; Roger De Spoelberch Foundation ; Wellcome Trust ; Emory Universitys Research Council ; Swedish Research Council |
DOI:10.1016/j.neuroimage.2019.01.029 | Free, Available for download, Freely available | https://github.com/hMRI-group/hMRI-toolbox | SCR_017682 | 2026-08-03 09:37:06 | 33 | |||||||
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Science of Behavior Change Research Network Resource Report Resource Website |
Science of Behavior Change Research Network (RRID:SCR_017385) | SOBC | data or information resource, portal, project portal | Repository for behavioral science measures that have been validated or are in process of being validated in accordance with SOBC Experimental Medicine Approach. | Data, behavioral, science, SOBC, measure, data, medicine | NIH | SCR_017388 | https://scienceofbehaviorchange.org/measures/, https://scienceofbehaviorchange.org/measures/ | SCR_017385 | SOBC Measures Repository, Science of Behavior Change (SOBC) Research Network | 2026-08-03 09:36:37 | 0 | |||||||
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Human Atlas of Neonatal Development and Early Life Immunity Resource Report Resource Website 1+ mentions |
Human Atlas of Neonatal Development and Early Life Immunity (RRID:SCR_021947) | HANDEL-I | data or information resource, portal, project portal | HANDEL-1 program to better understand normal human immune development by acquiring stromal and mucosal tissues from infant and pediatric organ donors and to create novel and essential dataset informing immune system development in collaborative research project that leverages shared access to various tissues in conjunction with existing HANDEL-P program that seeks to understand development of pancreas and islet microenvironment in early life. | T1D, normal human immune development, stromal and mucosal tissues, infant and pediatric organ donors, dataset, pancreas development, islet microenvironment | has parent organization: University of Florida; Florida; USA | Type 1 Diabetes | Free, Freely available | SCR_021947 | Human Atlas of Neonatal Development and Early-Life Immunity | 2026-08-03 09:37:31 | 4 | |||||||
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Body Mass Index Calculator Resource Report Resource Website |
Body Mass Index Calculator (RRID:SCR_000122) | BMI Calculator | data analysis service, service resource, analysis service resource, production service resource | Body Mass Index (BMI) for adults can be calculated using only height and weight. Body mass index (BMI) is a measure of body fat based on height and weight that applies to adult men and women. | adult human, body mass, male, female |
is listed by: NIDDK Information Network (dkNET) is listed by: Genetic Analysis Software has parent organization: National Heart Lung and Blood Institute |
NHLBI | Free, Public | nlx_152731 | SCR_000122 | Calculate Your Body Mass Index | 2026-08-03 09:30:58 | 0 | ||||||
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PEpiD Resource Report Resource Website 1+ mentions |
PEpiD (RRID:SCR_000235) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A database to store the curated epigenetic data from studies of prostate cancer retrieved by literature mining. The Prostate Epigenetic Database (PEpiD) is meant as a resource for finding previous studies of prostate cancer in humans, mice and rats. Searches can be targeted through the categories of DNA methylation, histone modification, and microRNA. | epigenetic, prostate cancer, dna methylation, histone modification, micro rna, mrna |
is listed by: OMICtools has parent organization: Tongji University; Shanghai; China |
Prostate Cancer | PMID:23696878 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01845 | SCR_000235 | Prostate Epigenetic Database | 2026-08-03 09:30:59 | 2 | ||||||
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MedGen Resource Report Resource Website 1+ mentions |
MedGen (RRID:SCR_000111) | MedGen | data or information resource, database | A database of organized information related to human medical genetics, such as attributes of conditions with a genetic contribution. | medical genetics, medical, genetics, disease, clinical |
is listed by: OMICtools is listed by: Genetic Testing Registry has parent organization: NCBI |
NLM 1ZIHLM200888-05 | PMID:32329672 | nlx_156941, OMICS_01549 | SCR_000111 | 2026-08-03 09:30:57 | 6 | |||||||
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Windber Tissue Bank Resource Report Resource Website |
Windber Tissue Bank (RRID:SCR_000509) | WRI Tissue Bank | tissue bank, biomaterial supply resource, material resource | Under the direction of Stella Somiari, Ph.D., the tissue bank at Windber Research Institute acquires and banks large numbers of high quality and well annotated normal and diseased tissue specimens. These specimens are obtained from fully informed and consented donors using Institutional Review Board (IRB) approved protocols and are accompanied by detailed clinical, family history and demographic information. The tissue bank has established Standard Operating Procedures (SOPs) for tissue acquisition, handling, processing, packaging and shipping. All collaborators at participating clinics/medical centers utilize these procedures to ensure that the integrity of the specimen is maintained. Tissue types in our collection include plasma, serum, tissue embedded in optimum cutting temperature (OCT), formalin fixed paraffin embedded, and flash frozen. We also isolate and bank tissue derived products such as DNA, RNA and protein for research. Very stringent SOPs are in place for the process of extraction of these tissue-derived products and for quality control/quality assurance (QA/QC). The WRI tissue bank currently has 5 isothermal freezers each with the capacity to store 36,000 specimens. For all specimens obtained from surgical procedures, routine histology is performed to obtain representative Hematoxylin and Eosin (H & E) stained sections for imaging/archiving. All H & E sections are imaged on the Trestle SL-50 imaging system and these images are available online to designated collaborative sites. A certified pathologist verifies all tissue specimens and WRI has telepathology capabilities, which can also be utilized for pathology verification when a second pathologist opinion is required to confirm specimen diagnosis. Other uses of the telepathology capabilities include the verification of Laser Capture Microdissection (LCM) sections (by pathologist) to ensure the correct areas are captured for research. The telepathology system at WRI is the Trestle Corporation's Medmicro system, which permits the pathologist to remotely view, navigate and share images at sub-micron resolution over standard internet connections in real-time. | specimen, clinical data, family history, demographic data, tissue, plasma, serum, dna, rna, protein, optimum cutting temperature, formalin fixed paraffin embedded, frozen, normal, disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Windber Research Institute |
Normal, Disease | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_29009 | SCR_000509 | Windber Research Institute Tissue Bank, Windber Research Institute Tissue Banking, Windber Tissue Banking, WRI Tissue Banking | 2026-08-03 09:31:04 | 0 | ||||||
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Midwest Transplant Network Resource Report Resource Website |
Midwest Transplant Network (RRID:SCR_000018) | MTN | tissue bank, biomaterial supply resource, material resource, nonprofit organization | An organization that specifically operates in Kansas and the the western half of Missouri, and provides help with connecting the community to organ and tissue procurement, as well as generates general public awareness. This organization is a federally certified non-profit Organ Procurement Organization (OPO) that is meant to help in several facets of transplant and procurement services. | organ procurement, transplant, tissue procurement, public awareness, kansa, western missouri | is listed by: One Mind Biospecimen Bank Listing | nlx_87553 | SCR_000018 | 2026-08-03 09:30:56 | 0 | |||||||||
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Feinstein Biorepository Resource Report Resource Website |
Feinstein Biorepository (RRID:SCR_000535) | Feinstein Biorepository | tissue bank, biomaterial supply resource, material resource | The Biorepository was designed to collect, process, and distribute large numbers of high quality research specimens quickly and efficiently. The data that is collected is primarily human DNA from whole blood along with other human specimen types. The data are collected, processed, stored and later distributed to support a large number of research studies. Biobanking of other specimen types include cells, RNA, serum, plasma and tissue. The Biorepository serves as a storage facility for tracking specimen inventory using bar code technologies. The Biorepository also conducts most operations using modern laboratory automation and robotics, an efficient way to avoid processing errors inherent in the handling of larger numbers of specimens. | dna, blood, cell, rna, serum, plasma, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Feinstein Institute for Medical Research |
nlx_67278 | SCR_000535 | North Shore-LIJ Biorepository, Feinstein Institute for Medical Research Biorepository | 2026-08-03 09:31:04 | 0 | ||||||||
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Ohio State Leukemia Tissue Bank Resource Report Resource Website |
Ohio State Leukemia Tissue Bank (RRID:SCR_000529) | LTBSR | tissue bank, biomaterial supply resource, material resource | The OSU Comprehensive Cancer Center Leukemia Tissue Bank Shared Resource (LTBSR) facilitates the successful translation of basic leukemia research to the clinical setting via an extensive repository of tissue samples and accompanying pathologic, cytogenetic and clinical data for ready correlation of clinical and biological results. The LTBSR, which is an NCI-sponsored biorepository, has more than 40,000 vials of cryopreserved viable cells and 13,000 vials of matched frozen plasma and/or serum samples from more than 4,000 patients treated for leukemia and other malignancies. Committed to furthering translational research efforts for OSUCCC - James members and the cancer research community, the LTBSR provides investigators with training and technical support as well as procurement, processing, storage, retrieval and distribution of clinical research materials. In many cases, the LTBSR serves as the central processing lab for multi-site trials in which the principal investigator is an OSUCCC - James member. The LTBSR's goals are to: * Provide a central collection, processing and a state-of-the-art repository for samples collected from leukemia patients treated on OSUCCC - James protocols, and * Provide materials to investigators involved in collaborative studies with OSU, who examine relevant cellular and molecular properties of leukemia and correlate these properties with clinical or population-based outcomes. | leukemia, tissue, plasma, serum, cell, cells, viable cells, cryopreserved viable cells, pathologic data, cytogenetic data, clinical data, frozen, cryopreserved, malignancy, cancer |
is listed by: One Mind Biospecimen Bank Listing has parent organization: OSUCCC-James |
Leukemia, Cancer | NCI 2P30CA016058-40 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_55663 | http://www.osuccc.osu.edu/11167.cfm | SCR_000529 | OSUCCC Leukemia Tissue Bank Shared Resource, OSUCCC LTBSR, OSU Comprehensive Cancer Center Leukemia Tissue Bank Shared Resource | 2026-08-03 09:31:04 | 0 | ||||
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BWH Partners Tissue and Blood Repository Resource Report Resource Website |
BWH Partners Tissue and Blood Repository (RRID:SCR_000125) | tissue bank, biomaterial supply resource, material resource | A repository which provides specimen acquisition, processing and storage services, and access to archived frozen tissue specimens to the BWH/MGH/DFCI research community. | specimen acquisition, specimen archive, storage, processing, core faciltiy, tissue, blood, core facility, tissue bank, material storage repository | is listed by: Eagle I | Available to researchers, User fee | nlx_156143 | http://harvard.eagle-i.net/i/0000012c-74f7-1f48-c437-ff0b80000000 | http://www.partners.org/researchcores/clinical/tissue_blood_BWH.html | SCR_000125 | Brigham and Women's Hospital PartnersTissue and Blood Repository Core, Partners Tissue and Blood Repository Core, Brigham and Women's Hospital Partners Tissue and Blood Repository | 2026-08-03 09:30:58 | 0 | ||||||
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Colin 3T/7T High-resolution Atlas Resource Report Resource Website |
Colin 3T/7T High-resolution Atlas (RRID:SCR_000160) | Colin 3T/7T High-resolution Atlas | data or information resource, atlas | High-field extension of the Colin27 single-subject atlas with additional high-resolution, quantitative, averaged scans at both 3T and 7T. | nifti-1, magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_157729 | SCR_000160 | Colin 3T / 7T High-resolution Atlas | 2026-08-03 09:30:58 | 0 | |||||||
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National Disease Research Interchange Resource Report Resource Website 100+ mentions Rating or validation data |
National Disease Research Interchange (RRID:SCR_000550) | NDRI | tissue bank, biomaterial supply resource, material resource | NDRI is a Not-For-Profit (501c3) Corporation dedicated to providing the highest quality human biomaterials for research. NDRI makes it easy for researchers to get the human tissues and organs they need, prepared, preserved and shipped precisely according to their specific scientific protocols, as quickly as possible, and in the largest available quantities. NDRI provides researchers with protocol specific human neurological tissues such as brain stem, spinal cord, and basal ganglia, among others. In addition to control specimens, NDRI recovers tissues from donors with a variety of diseases, including Down syndrome, Parkinsons disease, Alzheimers disease, schizophrenia, and dementia. Through the NDRI 24/7 referral and procurement system, research consented biospecimens can be provided from low post mortem interval donors preserved at 4ºC, frozen or snap frozen, fixed, paraffin embedded, or as unstained slides. | neurological, tissue, organ, cell, neurological tissue, brainstem, spinal cord, basal ganglia, cerebral cortex, hippocampus, frozen, snap frozen, fixed, paraffin embedded, unstained slide, disease, down syndrome, parkinson's disease, alzheimer's disease, schizophrenia, dementia, control, normal, catalog |
is listed by: One Mind Biospecimen Bank Listing is listed by: Multiple Sclerosis Discovery Forum is listed by: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is parent organization of: Human Tissue and Organ for Research Resource (HTORR) is parent organization of: Human Biological Data Interchange is parent organization of: NDRI Dorsal Root Ganglia Program |
Down syndrome, Parkinson's disease, Alzheimer's disease, Schizophrenia, Dementia | NIH OD011158 | Public: NDRI is a nonprofit organization that procures and distributes normal and diseased human biomaterials to biomedical researchers in academia, government, and industry. | nlx_99804 | SCR_000550 | 2026-08-03 09:31:05 | 190 | ||||||
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Iowa Donor Network Resource Report Resource Website |
Iowa Donor Network (RRID:SCR_000548) | IDN | tissue bank, biomaterial supply resource, material resource | A nonprofit organ procurement agency based in Iowa. The organization facilitates both organ and tissue recovery in cooperation with local hospitals. The network also works to support public education, hospital development and family support services. | donate, bank, tissue, eye, organ, hospital, education | is listed by: One Mind Biospecimen Bank Listing | nlx_96684 | SCR_000548 | 2026-08-03 09:31:05 | 0 | |||||||||
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eSLDB - eukaryotic Subcellular Localization database Resource Report Resource Website 1+ mentions |
eSLDB - eukaryotic Subcellular Localization database (RRID:SCR_000052) | eSLDB | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 22,2022. database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions. | proteome, protein, homology | has parent organization: University of Bologna; Bologna; Italy | European Union VI Framework Programme | PMID:17108361 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02815 | SCR_000052 | eukaryotic Subcellular Localization database | 2026-08-03 09:30:56 | 1 | |||||
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Malaysian Tissue Bank Resource Report Resource Website |
Malaysian Tissue Bank (RRID:SCR_000331) | tissue bank, biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_67604 | SCR_000331 | 2026-08-03 09:31:01 | 0 | |||||||||||
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Bangkok Biomaterial Center Resource Report Resource Website |
Bangkok Biomaterial Center (RRID:SCR_000328) | tissue bank, biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 9, 2017. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_54103 | SCR_000328 | 2026-08-03 09:31:01 | 0 | |||||||||||
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Lifespan Observations Database Resource Report Resource Website 1+ mentions |
Lifespan Observations Database (RRID:SCR_001609) | Lifespan Observations Database | data or information resource, database | Database that collects published lifespan data across multiple species. The entire database is available for download in various formats including XML, YAML and CSV. | lifespan, phenotype, intervention, gene, compound, publication |
is used by: NIF Data Federation is used by: Aging Portal is related to: MONARCH Initiative has parent organization: Sageweb |
Aging | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153873 | http://sageweb.org/lifespandb | SCR_001609 | Sageweb Lifespan Observation Database | 2026-08-03 09:31:28 | 1 | |||||
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MirSNP Resource Report Resource Website 50+ mentions |
MirSNP (RRID:SCR_001629) | MirSNP | data or information resource, database | Database of human SNPs in predicted miRNA-mRNA binding sites, based on information from dbSNP135 and mirBASE18. MirSNP is highly sensitive and covers most experiments confirmed SNPs that affect miRNA function. MirSNP may be combined with researchers' own GWAS or eQTL positive data sets to identify the putative miRNA-related SNPs from traits/diseases associated variants. They aim to update the MirSNP database as new versions of mirBASE and dbSNP database become available. | single nucleotide polymorphism, mirna, genome-wide association study, expression quantitative trait locus, mirna-mrna binding site, trait, disease, variant, gene, mrna, FASEB list | has parent organization: Peking University; Beijing; China | National Natural Science Foundation of China 81071087; National Natural Science Foundation of China 81071088; International Science and Technology Cooperation Program of China 2010DFB30820; National High Technology Research and Development Program of China 2009AA022702 |
PMID:23173617 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153896 | http://202.38.126.151/hmdd/mirsnp/search/ | SCR_001629 | 2026-08-03 09:31:23 | 73 | |||||
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AnimalTFDB Resource Report Resource Website 100+ mentions |
AnimalTFDB (RRID:SCR_001624) | AnimalTFDB | data or information resource, database | A comprehensive transcription factor (TF) database in which they identified and classified all the genome-wide TFs in 50 sequenced animal genomes (Ensembl release version 60). In addition to TFs, it also collects transcription co-factors and chromatin remodeling factors of those genomes, which play regulatory roles in transcription. Here they defined the TFs as proteins containing a sequence-specific DNA-binding domain (DBD) and regulating target gene expression. Currently, the AnimalTFDB classifies all the animal TFs into 72 families according to their conserved DBDs. Gene lists of transcription factors, transcription co-factors and chromatin remodeling factors of each species are available for downloading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, transcription co-factor, chromatin remodeling factor, gene structure, functional domain, go annotation, protein interaction, ortholog, paralog, 3d structure, pathway, protein-protein interaction, binding site, target, data set, image collection, 3d spatial image, bio.tools, FASEB list |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: Ensembl has parent organization: Huazhong University of Science and Technology; Wuhan; China |
Huazhong University of Science and Technology; Wuhan; China ; Fundamental Research Funds for the Central Universities 2010MS045; National Natural Science Foundation of China 31171271 |
PMID:22080564 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153892, OMICS_01856, biotools:animal_tfdb | https://bio.tools/animal_tfdb | SCR_001624 | Animal Transcription Factor Database | 2026-08-03 09:31:23 | 289 |
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