Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
InteroPorc Resource Report Resource Website 1+ mentions |
InteroPorc (RRID:SCR_002067) | InteroPorc | data analysis service, data processing software, source code, analysis service resource, data analysis software, software resource, software application, production service resource, service resource, database, data or information resource | Automatic prediction tool to infer protein-protein interaction networks, it is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8. Users can use this page to ask InteroPorc for all species present in Integr8. Some results are already computed and users can run InteroPorc to investigate any other species. Currently, the following databases are processed and merged (with datetime of the last available public release for each database used): IntAct, MINT, DIP, and Integr8. | orthology, prediction, protein interaction, tool, sequenced genome, proteinprotein interaction, inferred interaction, molecular interaction, interaction, protein, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Integr8 : Access to complete genomes and proteomes is related to: IntAct is related to: MINT is related to: Database of Interacting Proteins (DIP) is related to: PSICQUIC Registry has parent organization: CEA; Gif sur Yvette; France |
European Union FELICS 021902 RII3; Marie Curie Fellowship ; French National Agency of Research ANR Biosys06_134823 SULFIRHOM; French Atomic Energy Commission |
PMID:18508856 | Open unspecified license, Acknowledgement requested | nif-0000-20816, biotools:interoporc | https://bio.tools/interoporc | SCR_002067 | InteroPorc: Automatic molecular interaction predictions, Automatic molecular interaction predictions | 2026-08-04 09:40:33 | 6 | ||||
|
NeuroMorpho.Org Resource Report Resource Website 50+ mentions |
NeuroMorpho.Org (RRID:SCR_002145) | storage service resource, data repository, service resource, database, data or information resource | Centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact. | neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurology, FASEB list |
is used by: NIF Data Federation is used by: BICCN is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: DONE: Detection of Outlier NEurons is related to: NIF Literature is related to: Computational Neurobiology and Imaging Center is related to: Integrated Manually Extracted Annotation is related to: xyz2swc is related to: Allen Institute for Brain Science has parent organization: George Mason University; Virginia; USA is parent organization of: NeuroMorpho.Org species ontology is parent organization of: NeuroMorpho.Org species ontology old |
NINDS R01 NS39600; MURI ONR N000141010198 |
PMID:17728438 PMID:16552417 PMID:18949582 |
Free, Available for download, Freely available | nif-0000-00006, r3d100010107 | http://www.nitrc.org/projects/neuromorpho_org, http://neuromorpho.org/, https://doi.org/10.17616/R3WW2K | SCR_002145 | Neuro Morpho, NeuroMorpho.org, NeuroMorpho | 2026-08-04 09:40:34 | 96 | |||||
|
Cell Centered Database Resource Report Resource Website 10+ mentions |
Cell Centered Database (RRID:SCR_002168) | CCDB | image repository, storage service resource, data repository, service resource, database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented June 5, 2017. It has been merged with Cell Image Library. Database for sharing and mining cellular and subcellular high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging that makes unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome. The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from microscope the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB. | electron microscope, light microscopy, electron tomography, electron microscopy, image, cell, microscopy, tomography |
is used by: NIF Data Federation is used by: Integrated Datasets is listed by: re3data.org is related to: Cell Image Library (CIL) is related to: Cell Image Library (CIL) is related to: Whole Brain Catalog is related to: Integrated Manually Extracted Annotation has parent organization: University of California at San Diego; California; USA has parent organization: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR is parent organization of: Subcellular Anatomy Ontology is parent organization of: CCDB Image Converter is parent organization of: Jinx is parent organization of: WebImageBrowser is parent organization of: Image Workflow is parent organization of: Animal Imaging Database |
PMID:18054501 PMID:12160711 |
Free, Freely available | nif-0000-00007, r3d100000018 | SCR_002168 | CCDB, Cell-Centered Database | 2026-08-04 09:40:34 | 31 | ||||||
|
Visible Mouse Project Resource Report Resource Website 1+ mentions |
Visible Mouse Project (RRID:SCR_002393) | Visible Mouse Project | image collection, video resource, training material, narrative resource, data or information resource | Educational resource to introduce users to the anatomy, physiology, histology, and pathology of the laboratory mouse, with an emphasis on the Genetically Engineered Mouse (GEM). It provides access to histological images, scanned at high resolution and browsable through Zoomify, movie loops and animations derived from MRI, correlated MRI and histology. It has CNS data but is focused on the whole body, e.g., physiological data is available for the heart in the form of wave patterns, histology, CNS, pathology, magnetic resonance imaging, neoplasms; animation, virtual histology, mouse, correlated imaging, necropsy, whole mouse. It may be useful to neuroscientists by relating brain anatomy to the rest of the body. There is a movie illustrating necropsy of the mouse. A link to a compendium of histological slices of brain neoplasms is provided under the Image Archive link. There is a CNS link under construction for anatomical system, which presumably will include detailed CT imaging. This site still appears to be under construction. | necropsy, histology, pathology, physiology, pathology, knock out mouse, mri, heart, wave pattern, central nervous system, neoplasm, animation, virtual histology, anatomy, anatomic system, imaging |
has parent organization: University of California at Davis; California; USA is parent organization of: Visible Mouse Anatomy |
NIH ; MMRRC |
For educational non-profit use, Permission is required to link to any material on the site | nif-0000-00119 | SCR_002393 | The Visible Mouse Project | 2026-08-04 09:40:38 | 2 | ||||||
|
Ensembl Resource Report Resource Website 10000+ mentions |
Ensembl (RRID:SCR_002344) | database, data or information resource | Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species. | collection, genome, dataset, database, vertebrate, eukaryotic, DNA, protein, sequence, search, automaticly, annotate, data, bio.tools, FASEB list |
is used by: NIF Data Federation is used by: Animal QTLdb is used by: ChannelPedia is used by: Blueprint Epigenome is used by: HmtPhenome lists: Ensembl Covid-19 is listed by: OMICtools is listed by: Biositemaps is listed by: re3data.org is listed by: LabWorm is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: Ensembl Genomes is related to: GermOnline is related to: CandiSNPer is related to: Human Splicing Finder is related to: NGS-SNP is related to: Sanger Mouse Resources Portal is related to: DECIPHER is related to: Ensembl Genomes is related to: PeptideAtlas is related to: AnimalTFDB is related to: Bgee: dataBase for Gene Expression Evolution is related to: FlyMine is related to: Rat Gene Symbol Tracker is related to: UniParc at the EBI is related to: go-db-perl is related to: UniParc is related to: g:Profiler is related to: RIKEN integrated database of mammals is related to: VBASE2 is related to: p300db is related to: ShinyGO has parent organization: European Bioinformatics Institute has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: Ensembl Metazoa is parent organization of: Ensembl Variation is parent organization of: Pre Ensembl is parent organization of: Variant Effect Predictor is parent organization of: Ensembl Bacteria is parent organization of: Ensembl Plants is parent organization of: Ensembl Fungi is parent organization of: Ensembl Protists is parent organization of: Ensembl Genome Browser works with: Genotate works with: CellPhoneDB works with: Open Regulatory Annotation Database works with: Database of genes related to Repeat Expansion Diseases works with: TarBase |
Wellcome Trust ; EMBL ; European Union ; FP7 ; FP6 ; MRC ; NHGRI ; BBSRC |
PMID:24316576 PMID:23203987 |
nif-0000-21145, OMICS_01647, biotools:ensembl, r3d100010228 | https://bio.tools/ensembl, https://sources.debian.org/src/ensembl/, https://doi.org/10.17616/R39K5B | SCR_002344 | ENSEMBL | 2026-08-04 09:40:38 | 11652 | ||||||
|
PROVEAN Resource Report Resource Website 1000+ mentions |
PROVEAN (RRID:SCR_002182) | PROVEAN | data analysis service, analysis service resource, software resource, production service resource, service resource | A software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. | amino acid substitution, indel, function, protein, amino acid, substitution, protein variant, genome variant, next-generation sequencing, insertion, deletion |
is listed by: OMICtools has parent organization: J. Craig Venter Institute |
NIH ; NHGRI 5R01HG004701-04 |
PMID:23056405 | Free, Available for download, Freely available | OMICS_01849 | SCR_002182 | Protein Variation Effect Analyzer | 2026-08-04 09:40:34 | 2231 | |||||
|
dbSNP Resource Report Resource Website 5000+ mentions |
dbSNP (RRID:SCR_002338) | dbSNP | storage service resource, data repository, service resource, database, data or information resource | Database as central repository for both single base nucleotide substitutions and short deletion and insertion polymorphisms. Distinguishes report of how to assay SNP from use of that SNP with individuals and populations. This separation simplifies some issues of data representation. However, these initial reports describing how to assay SNP will often be accompanied by SNP experiments measuring allele occurrence in individuals and populations. Community can contribute to this resource. | insertion, polymorphism, short, deletion, single, nucleotide, genetic, variation, genomics, genotype, disease, allele, microsatellite, marker, multinucleotide, heterozygous, sequence, gold standard, bio.tools |
is used by: ExAc is used by: GEMINI is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl Variation is related to: GWAS Central is related to: TopoSNP is related to: GWAS Central has parent organization: NCBI has parent organization: National Human Genome Research Institute works with: Open Regulatory Annotation Database |
NLM | PMID:21154707 | Free, Freely available | nif-0000-02734, biotools:dbsnp, OMICS_00264, r3d100010652 | http://www.ncbi.nlm.nih.gov/projects/SNP/, https://bio.tools/dbsnp, https://doi.org/10.17616/R3XG81 | SCR_002338 | dbSNP: Database for Short Genetic Variations, Entrez SNP - Single Nucleotide Polymorphism, SNV Database, NCBI SNV Database, NCBI Short Genetic Variations Database, NCBI Short Genetic Variations, NCBI Single Nucleotide Polymorphism, Entrez SNP, dbSNP, NCBI Short Genetic Variations (SNV) database | 2026-08-04 09:40:37 | 8619 | ||||
|
CistromeMap Resource Report Resource Website |
CistromeMap (RRID:SCR_002173) | CistromeMap | storage service resource, data repository, service resource, database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human. They have also manually curated metadata to ensure annotation consistency, and developed a user-friendly display matrix for quick navigation and retrieval of data for specific factors, cells, and papers. The community can contribute to this resource. | chip-seq, dnase-seq, cell, factor |
is listed by: OMICtools is related to: CistromeFinder has parent organization: Dana-Farber Cancer Institute |
PMID:22495751 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01853 | SCR_002173 | 2026-08-04 09:40:34 | 0 | |||||||
|
Connectomes.org Resource Report Resource Website |
Connectomes.org (RRID:SCR_002243) | Connectomes.org | portal, data processing software, topical portal, software resource, software application, data visualization software, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 28,2025. Project mapping whole mouse brain connectivity using serial block face scanning electron microscopy (SBF-SEM) with a specially-designed whole-brain microtome (WBM). With any luck, the whole mouse brain will be mapped ultrastructurally in the near term, which will then open the door to more serious problems; reliable automated segmentation and circuit reconstruction. These will undoubtedly require advances in machine learning methods and their application. Connectomics Software and a Multiresolution Image Viewer (MIV) is also available. | circuit, electron microscopy, brain, connectome, synapse, gap junction, neuron | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155556 | SCR_002243 | 2026-08-04 09:40:36 | 0 | |||||||||
|
Genevestigator Resource Report Resource Website 100+ mentions |
Genevestigator (RRID:SCR_002358) | Genevestigator | data analysis service, analysis service resource, production service resource, service resource, commercial organization, database, data or information resource | A high performance search engine for gene expression that integrates thousands of manually curated public microarray and RNAseq experiments and nicely visualizes gene expression across different biological contexts (diseases, drugs, tissues, cancers, genotypes, etc.). There are two basic analysis approaches: # for a gene of interest, identify which conditions affect its expression. # for condition(s) of interest, identify which genes are specifically expressed in this/these conditions. Genevestigator builds on the deep integration of data, both at the level of data normalization and on the level of sample annotations. This deep integration allows scientists to ask new types of questions that cannot be addressed using conventional tools. | gene, genetic, animal, development, disease, meta-analysis, regulation, stage, microarray, rnaseq, visualization, gene expression, disease, drug, tissue, cancer, genotype, pharma, biomedical, conditions, genotype, anatomy, neoplasm, chemical, hormone, infection, model organism, organ, cell type, cell line, target, biomarker, similarity, FASEB list | is parent organization of: RefGenes | 4 products:, Free, Free for academic use, Account required, Paid subscription, Local installation | nif-0000-21172, OMICS_00763 | SCR_002358 | 2026-08-04 09:40:38 | 396 | ||||||||
|
GenePaint P56 Mouse Atlas Resource Report Resource Website |
GenePaint P56 Mouse Atlas (RRID:SCR_002788) | GenePaint Map P56 | reference atlas, atlas, data or information resource | Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing is permitted between planes of sectioning thus allowing the most appropriate plane to be selected. Abbreviations are found in a list accessed by clicking the see abbreviation link at the bottom of each map. Alternatively, passing the cursor directly across the abbreviation on the map will result in the appearance of the appropriate term in the rider on top of the map panel. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). | gene, adult mouse, anatomical, anatomy, annotation, atlas, basal forebrain, brain, cerebellum, cortex, globus pallidus, hippocampus, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, p56, pons, region, septum, stained, striatum, thalamus, tract, ventral striatum, image, gene expression |
is related to: GenePaint E15 Atlas is related to: GenePaint P7 Atlas is related to: GenePaint P7 Atlas has parent organization: GenePaint |
nif-0000-24450 | SCR_002788 | GenePaint P56 Mouse Atlas, GenePaint Mouse Brain Map P56 | 2026-08-04 09:40:44 | 0 | ||||||||
|
Penn Induced Pluripotent Stem Cell Core Facility Resource Report Resource Website |
Penn Induced Pluripotent Stem Cell Core Facility (RRID:SCR_002976) | iPSC Core, iPSC Core Facility | cell repository, material resource, biomaterial supply resource | Core facility that provides the following services: Induced pluripotent stem cell derivation, Characterization of induced pluripotent stem cells, Hands-on training course for embryonic / induced pluripotent stem cell culture. Additionally, the Core has several established human iPS cell lines for purchase for research purposes by non-profit institutions. Please contact the director for available cell lines. The goals of the Core are: * to facilitate derivation of induced pluripotent stem (iPS) cells from somatic cells; * to provide expertise and training to researchers in embryonic stem (ES)/iPS cell culture; * and to serve as a resource for sharing iPS cell lines and iPSC technology within the UPenn and the broader scientific community. | viral infection, mycoplasma testing, real-time pcr, karyotyping, microsatellite analysis, embryonic stem cell culture, induced pluripotent stem cell, cell culture, embryonic stem cell, fibroblast, lentiviral vector, sendai virus, blood, skin, somatic cell, experimental protocol |
is listed by: One Mind Biospecimen Bank Listing is listed by: Eagle I has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156484 | SCR_002976 | 2026-08-04 09:40:47 | 0 | ||||||||
|
Allen Mouse Brain Reference Atlas Resource Report Resource Website 100+ mentions |
Allen Mouse Brain Reference Atlas (RRID:SCR_002978) | ABA, ARA, ABA Mouse Brain | reference atlas, atlas, data or information resource | Allen Mouse Brain Atlas includes full color, high resolution anatomic reference atlas accompanied by systematic, hierarchically organized taxonomy of mouse brain structures. Enables interactive online exploration of atlas and to provide deeper level of 3D annotation for informatics analysis and viewing in Brain Explorer 3D viewer. | 3D, map, gene, expression, data, adult, mouse, brain, interactive, image |
is used by: NIF Data Federation is used by: BICCN is related to: BrainStars is related to: PubAnatomy is related to: Integrated Brain Gene Expression is related to: Allen Brain Atlas API is related to: 3DBar is related to: aGEM is related to: CellTax vignette is related to: Blue Brain Cell Atlas is related to: Allen Mouse Brain Common Coordinate Framework is related to: SHARCQ is related to: Enhancer Trap Line Browser is related to: Linked Neuron Data has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas works with: MeshView works with: Brain Gene Expression Analysis toolbox works with: VisuAlign works with: MIRACL |
Free, Freely available | SCR_013286, nlx_21010, nif-0000-00508 | http://mouse.brain-map.org/atlas/index.html, http://mouse.brain-map.org/ | SCR_002978 | Allen Mouse Brain Reference Atlas, Allen Reference Atlases, ABA Adult Mouse Brain, ARA ontology | 2026-08-04 09:40:47 | 444 | ||||||
|
Sequencing of Idd regions in the NOD mouse genome Resource Report Resource Website 1+ mentions |
Sequencing of Idd regions in the NOD mouse genome (RRID:SCR_001483) | Sequencing of Idd regions in the NOD mouse genome | resource, data set, data or information resource | Genetic variations associated with type 1 diabetes identified by sequencing regions of the non-obese diabetic (NOD) mouse genome and comparing them with the same areas of a diabetes-resistant C57BL/6J reference mouse allowing identification of single nucleotide polymorphisms (SNPs) or other genomic variations putatively associated with diabetes in mice. Finished clones from the targeted insulin-dependent diabetes (Idd) candidate regions are displayed in the NOD clone sequence section of the website, where they can be downloaded either as individual clone sequences or larger contigs that make up the accession golden path (AGP). All sequences are publicly available via the International Nucleotide Sequence Database Collaboration. Two NOD mouse BAC libraries were constructed and the BAC ends sequenced. Clones from the DIL NOD BAC library constructed by RIKEN Genomic Sciences Centre (Japan) in conjunction with the Diabetes and Inflammation Laboratory (DIL) (University of Cambridge) from the NOD/MrkTac mouse strain are designated DIL. Clones from the CHORI-29 NOD BAC library constructed by Pieter de Jong (Children's Hospital, Oakland, California, USA) from the NOD/ShiLtJ mouse strain are designated CHORI-29. All NOD mouse BAC end-sequences have been submitted to the International Nucleotide Sequence Database Consortium (INSDC), deposited in the NCBI trace archive. They have generated a clone map from these two libraries by mapping the BAC end-sequences to the latest assembly of the C57BL/6J mouse reference genome sequence. These BAC end-sequence alignments can then be visualized in the Ensembl mouse genome browser where the alignments of both NOD BAC libraries can be accessed through the Distributed Annotation System (DAS). The Mouse Genomes Project has used the Illumina platform to sequence the entire NOD/ShiLtJ genome and this should help to position unaligned BAC end-sequences to novel non-reference regions of the NOD genome. Further information about the BAC end-sequences, such as their alignment, variation data and Ensembl gene coverage, can be obtained from the NOD mouse ftp site. | genome, sequencing, genome sequencing, insulin-dependent diabetes, c57bl/6j, single nucleotide polymorphism, genetic variation, bacterial artificial chromosome, sequence, gene, animal model, clone, annotation, contig |
lists: VEGA is listed by: NIDDK Information Network (dkNET) has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Type 1 diabetes, Diabetes | NIAID AI 15416; NIDDK ; JDRF |
PMID:23729657 | Free, Freely available | nlx_152738 | http://www.sanger.ac.uk/resources/mouse/nod/ | SCR_001483 | Sequencing of Insulin-dependent diabetes regions in the NOD mouse genome | 2026-08-04 09:40:24 | 1 | |||
|
Allen Institute for Brain Science Transgenic Mouse Study Resource Report Resource Website 1+ mentions |
Allen Institute for Brain Science Transgenic Mouse Study (RRID:SCR_002999) | Allen Transgenic Study | data set, atlas, data or information resource | A comprehensive characterization of expression patterns of genetically-controlled markers or tool genes in the brains of transgenic mice generated by the Allen Institute as well as the broad scientific community. Providing standardized, detailed, anatomical profiling of transgene expression throughout the brain, this dataset is intended to reveal the potential of each transgenic mouse line and help researchers choose the appropriate tools for their studies. Transgenic mice are valuable tools to label selective neuronal or non-neuronal populations, modulate gene expression in these cells or manipulate activity of these cells for the study of neural circuits and brain function. The Allen Institute has launched a project to generate a variety of transgenic mouse lines, mainly using the Cre/lox system, to express fluorescent probes or neuronal activity manipulating tools in a variety of cell types in the brain. At the same time, utilizing Allen Institute's unique high-throughput capability, a pipeline is set up to characterize the ability in directing cell type specific expression in the brains of various transgenic mice generated by the Allen Institute as well as the broad scientific community. Through standardized, detailed, anatomical profiling of the transgene expression in the entire mouse brain, this dataset is intended to provide a comprehensive evaluation of the potential of each transgenic mouse line and help researchers choose the appropriate transgenic tools to study the function of different regions and/or cell types of the brain. This data release adds additional data to the existing set of new Cre-reporter lines generated at the Allen Institute that have stronger expression than other commonly used reporter lines are used to characterize approximately a dozen Cre-driver lines. The types of characterization data include digitized images (of sections sampling the entire brain) of colorimetric in situ hybridization (CISH), double fluorescent in situ hybridization (DFISH), native fluorescence of XFP (generic term for fluorescent proteins of different colors), and immunohistochemical (IHC) labeling of marker genes. | expression, gene expression, brain, brain function, cell, colorimetric, in situ hybridization, double fluorescent, image, immunohistochemical, marker genes, mouse, mouse line, native fluorescence of xfp, neural circuits, transgenic mice, molecular neuroanatomy resource |
is related to: JAX Cre Repository has parent organization: Allen Institute for Brain Science |
nif-0000-00512 | SCR_002999 | Transgenic Mouse Study | 2026-08-04 09:40:47 | 4 | ||||||||
|
Knockout Mouse Project Resource Report Resource Website 10+ mentions |
Knockout Mouse Project (RRID:SCR_005571) | KOMP, NIH KOMP | portal, project portal, data or information resource | Project is providing critical tools for understanding gene function and genetic causes of human diseases. Project KOMP is focused on generating targeted knockout mutations in mouse ES cells. Second phase, KOMP2, relies upon successful generation of strains of knockout mice from these ES cells. Information from JAX about their contributions to KOMP project. | Generating, knockout, mutation, mouse, ES cell, embryonic, stem, c57bl/6 |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is related to: KOMP2 is related to: KOMP2 is related to: StatPackets has parent organization: International Knockout Mouse Consortium has parent organization: National Institutes of Health is parent organization of: Knockout Mouse Project Repository is parent organization of: Knockout Mouse Project Repository at JAX |
NIH ; NIH Blueprint for Neuroscience Research |
Free, Freely available | nlx_145296, SCR_017527 | https://grants.nih.gov/grants/guide/rfa-files/rfa-rr-06-005.html | http://www.nih.gov/science/models/mouse/knockout/index.html | SCR_005571 | NIH Knockout Mouse Project, Knock-Out Mouse Project | 2026-08-04 09:41:23 | 10 | ||||
|
One Mind Biospecimen Bank Listing Resource Report Resource Website |
One Mind Biospecimen Bank Listing (RRID:SCR_004193) | One Mind Biobanks, One Mind Biobank | cell repository, material resource, biomaterial supply resource | International registry of biomaterial supply resources both for transplantation and research. Contributions to this resource are welcome. The database is searchable through NIF and is updated regularly. | biorepository, bio-repository, database, registry, biobank, biospecimen, repository |
is used by: NIF Data Federation is used by: Aging Portal lists: Midwest Transplant Network lists: Danish Multiple Sclerosis Biobank lists: Genetics of Kidneys in Diabetes lists: TEDDY lists: BioEden Tooth Cell Bank lists: Windber Tissue Bank lists: Boston University Alzheimer's Disease Center Neuropathology Core Facility lists: UCL Biobank lists: LifeLegacy Foundation lists: CCLG Tissue Bank lists: ADA GENNID Study lists: Ohio State Leukemia Tissue Bank lists: Feinstein Biorepository lists: Iowa Donor Network lists: National Disease Research Interchange lists: Emory ADRC Tissue and Biospecimen Banking Facility lists: Zebrafish Brain Atlas lists: KI Biobank - Amphetamine dependence lists: KI Biobank - PAIN lists: PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden lists: Africa Centre Biobank lists: UCSF Brain Tumor Tissue Bank lists: Southampton Tumour Bank lists: California National Primate Research Center Analytical and Resource Core lists: CPCTR: Cooperative Prostate Cancer Tissue Resource lists: DIAN - Dominantly Inherited Alzheimer Network lists: ZCre lists: Mexican Health and Aging Study lists: NIDDK Inflammatory Bowel Disease Genetics Consortium lists: Acute Liver Failure Study Group lists: Diabetes Prevention Type 1 lists: NIA Mouse cDNA Project Home Page lists: Type 1 Diabetes Resource lists: BARI 2D lists: Childhood Liver Disease Research and Education Network lists: EuMMCR lists: Living Biobank lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: Drug-Induced Liver Injury Network lists: HALT-C Trial lists: SEARCH for Diabetes in Youth lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: GenitoUrinary Development Molecular Anatomy Project lists: Medical Therapy of Prostatic Symptoms lists: Type 1 Diabetes Genetics Consortium lists: Texas A and M Institute for Genomic Medicine lists: Expression Patterns for C. elegans promoter GFP fusions lists: ATCC lists: Genes to Cognition - Biological Resources lists: TCAG lists: World Federation for Culture Collections lists: Italian Rett Syndrome database lists: Addgene lists: Rat Resource and Research Center lists: National Center for Marine Algae and Microbiota lists: UD Chick EST Project lists: NCI Mouse Repository lists: CGSC lists: International Gene Trap Consortium lists: Honey Bee Brain EST Project lists: Marine Biological Laboratory lists: NBRC lists: FANTOM DB lists: UMMC Center for Psychiatric Neuroscience Labs and Facilities lists: Gene Expression Nervous System Atlas lists: Washington National Primate Research Center lists: Primate Embryo Gene Expression Resource lists: Peromyscus Genetic Stock Center lists: Islet Cell Resource Centers lists: National Natural Toxins Research Center lists: GenomEUtwin lists: Drosophila Genomics Resource Center lists: Human Tissue and Organ for Research Resource (HTORR) lists: Special Mouse Strains Resource lists: New England National Primate Research Center lists: Addiction Research GPCR Assay Bank lists: Mutant Mouse Resource and Research Center lists: Penn Induced Pluripotent Stem Cell Core Facility lists: neuromice lists: EUROpean Saccharomyces Cerevisiae ARchive for Functional Analysis lists: ShARM lists: NIH NeuroBioBank lists: NIH Human Pluripotent Stem Cell Registry lists: Phoenix lists: The Cancer Genome Atlas lists: MUGEN Mouse Database lists: Coriell Cell Repositories lists: RIKEN BioResource Center lists: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders lists: Retinal Degeneration Rat Model Resource lists: Harvard Brain Tissue Resource Center lists: Glioma Molecular Dignostic Initiatives lists: Source BioScience LifeSciences lists: National Mesothelioma Virtual Bank lists: SpecimenCentral.com lists: Arizona Cancer Center Tumor Bank lists: Cryogenic Laboratories, Inc lists: Partners HealthCare Biorepository lists: National Neurological AIDS Bank lists: Mount Sinai Allograft Technologies lists: EuroBioBank lists: NICHD Brain and Tissue Bank for Developmental Disorders lists: Roswell Park Data Bank and BioRepository lists: Hungarian Neurological-Psychiatric Biobank lists: Roslin Cells lists: Vitiligo Biobank lists: NAF Ataxia Tissue Donation lists: HipSci lists: Cellartis lists: KaLy-Cell lists: Lions Eye Institute for Transplant and Research lists: Endocells lists: Leibniz Institute for Prevention Research and Epidemiology Biobank lists: DCI Tissue and Blood Procurement Shared Resource lists: Childhood Leukaemia Cell Bank lists: Cleveland Clinic Genomic Medicine Biorepository lists: Sunnybrook Tumour Bank lists: Massachusetts Human Stem Cell Bank lists: Liverpool Tissue Bank lists: Dr. Donald MacLellan Tissue Bank lists: OneLegacy lists: Arizona Biospecimen Locator lists: ProMPT - Prostate Cancer Mechanisms of Progression and Treatment lists: British Columbia Gynaecologic Tissue Bank lists: Guthy-Jackson Repository for Neuromyelitis Optica lists: Biorepository Alliance of Georgia for Oncology lists: ITOR Biorepository Services lists: Canadian Tumour Repository Network lists: Progeria Cell and Tissue Bank lists: Wright Medical Technology, Inc. lists: Accelerated Cure Project MS Repository lists: Integrated Biobank of Luxembourg lists: International Biologics, LLC lists: Canadian Breast Cancer Foundation Tumor Bank lists: AIDS and Cancer Specimen Resource lists: Canadian Virtual Brain Tumour Bank lists: UAB Comprehensive Cancer Center Tissue Procurement Shared Facility lists: Cancer Research Network of the FRSQ lists: Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) lists: Bangalore Brain Bank lists: Roslin Wellcome Trust Tick Cell Biobank lists: Osiris Therapeutics lists: LifePoint, Inc. lists: American Donor Services lists: Life Alaska Donor Services, Inc. lists: Biobank Graz lists: UCSF DNA Bank lists: Store-a-Tooth Stem Cell Bank lists: UC San Diego Biorepository lists: START Tumor Bank lists: Donor Alliance lists: University of Minnesota Tissue Procurement Facility lists: NEALS Sample Repository lists: South Texas Blood and Tissue Center lists: New Life Generation, Inc. lists: Transplant Services Center lists: Nevada Donor Network, Inc. lists: OECI - Tubafrost: The European Human Frozen Tissue Bank lists: Cincinnati Biobank Core Facility lists: OHSU Biolibrary lists: Ochsner Blood Bank lists: Brown University Rhode Island Biobank Core Facility lists: Myeloma Tissue Bank lists: US Biomax lists: LifeShare Transplant lists: BioStorage Technologies lists: Duke Biobank lists: UAB Alzheimer's Disease Center lists: Duke Biospecimen Repository lists: Center for Organ Recovery and Education - CORE lists: ReproTech, Ltd. lists: Ludwig Boltzman Tumour Bank lists: Lifesharing Tissue Services lists: Donor Network of Arizona lists: Wales Cancer Bank lists: M2Gen Biorepository lists: Medical College of Georgia Tumor Bank lists: Cellular Technology Ltd Cryopreserved PBMC lists: onCore UK lists: Doheny Eye and Tissue Transplant Bank lists: Dana Farber Tissue Bank lists: Karolisnka Biobank lists: Rocky Mountain MS Center Tissue Bank lists: Marshfield Clinic Biobank lists: Mantle Cell Lymphoma Cell Bank lists: Neuroendocrine Tumors Biobank lists: Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility lists: Maryland Brain Collection lists: Angioma Alliance DNA/Tissue Bank and Patient Registry lists: Wisconsin International Stem Cell Bank lists: Mid-America Transplant Services lists: Autism Genetic Resource Exchange lists: Moffitt Cancer Center Tissue Core lists: PROCURE Quebec Prostate Cancer Biobank lists: AIDS Malignancy Bank lists: University of Chicago Human Tissue Resource Center Biospecimen Banking lists: UAB SPORE Biorepository Banks lists: Bone Bank Allografts lists: Allograft Innovations, LLC lists: Origene China lists: Louisiana Organ Procurement Agency - LOPA lists: EDAR study: biomarkers for Alzheimer's disease lists: Cooperative Human Tissue Network lists: UMass Cancer Center Tissue and Tumor Bank lists: Crimson Biospecimen Core lists: ScienceCare lists: St. James Hospital Cryobiology Laboratory Stem Cell Facility lists: BrainNet Europe lists: Essential Tremor Centralized Brain Repository lists: South Dakota Lions Eye Bank lists: Estonian Genome Center lists: Cureline Biopathology lists: Stem-Health Hellas Stem Cell Bank lists: LifeTek OrthoBiologics lists: TissueNet lists: Swedish Regional Biobank lists: Cryo-Save lists: National Surgical Adjuvant Breast and Bowel Project Tissue Bank lists: University of Virginia Tissue Culture Facility lists: KORA-gen lists: Swiss Biobank lists: NIGMS Human Genetic Cell Repository lists: NINDS Repository lists: eyeGENE lists: NHGRI Sample Repository for Human Genetic Research lists: Biobank of Hospital Clinic - IDIBAPS lists: Regional Biobank of Central Norway lists: SeraCare Lifesciences: Sample Storage Management and Processing Services lists: NEI-AREDS Genetic Repository lists: COHORT Repository lists: JP McCarthy Cord Stem Cell Bank lists: Michigan Neonatal Biobank lists: SepNet Central Sample Bank lists: LifeLink Tissue Bank lists: SPH Biorepository lists: Cardio-Facio-Cutaneous Syndrome International Biobank lists: DCI Donor Services lists: LifeGift Organ Donation Center lists: Inflammatory Breast Cancer Biobank lists: University of Miami Tissue Bank lists: LifeNet Health of Florida lists: UTHealth BioBank lists: Southwest France Tumour Bank lists: Southern Alberta Organ and Tissue Donation Program lists: Blood and Tissue Center of Central Texas lists: MD Anderson Clone Bank lists: Community Tissue Services - CTS lists: Aurora Healthcare Biorepository lists: Human Biological Data Interchange lists: Bio-Options lists: Cancer Center Tissue Bank - Fudan University lists: British Columbia Tumour Tissue Repository lists: BioReliance Biorepository lists: New York Firefighters Skin Bank lists: GSDS - Golden State Donor Services lists: UK Multiple Sclerosis Tissue Bank lists: UCL/UCLH Biobank for Studying Health and Disease lists: Tumorbank Bern lists: IPBIR - Integrated Primate Biomaterials and Information Resource lists: Stanford Tissue Bank lists: HD Community BioRepository lists: Autism Research Resource lists: Yerkes Collection Non-Human Primate Resource lists: Hollings Cancer Center Tissue Biorepository and Research Pathology Services Shared Resource lists: Washington Regional Transplant Community - WRTC lists: Vanderbilt BioVU lists: Jackson Laboratory lists: Central England Haemato-Oncology Research Biobank lists: Genethon DNA and Cell Bank lists: University of Michigan Biorepository lists: Simons Simplex Collection lists: Gift of Life Donor Program lists: Queen Square Brain Bank lists: SeqWright Biorepository lists: Telethon Network of Genetic Biobanks lists: New York Organ Donor Network - NYODN lists: Wistar Institute Collection at Coriell lists: USIDNET DNA and Cell Repository lists: Brain Bank for Autism lists: Living Legacy Foundation of Maryland lists: Beaumont Hospitals Biobank lists: Central Biomaterial Bank - German Heart Failure Network lists: PXE International Registry and BioBank lists: Southeast Tissue Alliance, Inc. - SETA lists: National Biobank of Finland lists: CDC Cell and DNA Repository lists: ILSbio lists: California Cryobank, Inc. lists: ETEX Corporation lists: Leiomyosarcoma Cell and DNA Repository lists: HIV Biobank lists: Human Reference Genetic Material Repository lists: Hema-Quebec lists: LifeSource lists: National Temporal Bone Pathology Resource Registry lists: Blood Borne Pathogens Laboratory lists: Susan G. Komen Tissue Bank lists: Ohio State Biorepository lists: Alabama Organ Center lists: TRACK TBI Network lists: National Stem Cell Bank lists: Bioreclamation lists: Biobanque de Picardie lists: Ontario Tumour Bank lists: UK Stem Cell Bank lists: Fox Chase Biosample Repository Core Facility lists: Loma Linda University Cancer Center Biospecimen Laboratory lists: Barth Syndrome Biorepository lists: Interpore Cross International lists: Human Tissue Resource Network lists: California Transplant Services lists: National Cancer Institute Biorepositories lists: LifeCenter Organ Donor Network lists: HemaCare Corp. lists: Human Brain and Spinal Fluid Resource Center lists: Brain and Body Donation Program lists: Kings College London Infectious Diseases BioBank lists: Conticabase - European Sarcoma Database and Tumour Bank lists: Upstate New York Transplant Services lists: Donor Services of Indiana lists: Minnesota Liver Tissue Cell Distribution System lists: Research Tissue Repository - University of Connecticut lists: Mount Sinai Biobank lists: Rocky Mountain Tissue Bank lists: LifeCenter Northwest lists: International Histocompatibility Cell and DNA Bank lists: Regional Tissue Bank lists: Northwest Tissue Services lists: Washington University Tissue Bank lists: Capital Biosciences lists: Lawson Brain Tumour Tissue Bank lists: Andalusian Regional Tumour Bank lists: Protein Biotechnologies lists: Brainbow mouse resource at Jackson Labs lists: RTI Donor Services lists: University Andrology Laboratory lists: Cancer Control using Population-based Registries and Biobanks lists: UCSD Experimental Neuropath Laboratory lists: BioRep lists: da Vinci European Biobank lists: Wisconsin Tissue Bank lists: Indiana Organ Procurement Organization - IOPO lists: Quebec Leukemia Cell Bank lists: LifeBanc lists: Alzheimer's and Dementia Resource Center lists: Tayside Tissue Bank lists: Biobank Suisse lists: Florida Brain Bank lists: Erasmus MC Tissue Bank lists: Hackensack University Tissue Bank lists: World BioBank lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Tumorbank Basel Foundation lists: LifeLink Foundation lists: Gift of Hope Organ and Tissue Donor Network lists: St. Gallen Lung Biopsy Biobank lists: UNOS - United Network for Organ Sharing lists: UCSF AIDS Specimen Bank lists: MD Anderson Pancreas Tissue Bank lists: Kentucky Organ Donor Affiliates (KODA) lists: German Biobank Registry lists: Tennessee Donor Services lists: UC Davis Biorepository lists: MD Anderson Gynecologic Cancer Tissue Bank lists: Alamo Tissue Service, Ltd. lists: NeuroBiobank Munich lists: Brain-Net lists: Duke University Kathleen Price Bryan Brain Bank lists: Fairfax Cryobank lists: Lifeline of Ohio lists: University of Pittsburgh Brain Tissue Donation Program lists: Medical University of Vienna Institute of Neurology lists: NMDS - New Mexico Donor Services lists: South Carolina Biorepository System lists: CryoLife, Inc. lists: Tissue Banks International - TBI lists: NDRI Dorsal Root Ganglia Program lists: University of Texas Tumor Bank lists: Zebrafish International Resource Center lists: RLS Foundation Brain Bank lists: Dementia Brain Bank Research Program lists: St. Louis University Alzheimer's Brain Bank lists: Beta Cell Biology Consortium lists: UMKC Neuroscience Brain Tissue Bank and Research Laboratory lists: Parkinsons UK Brain Bank Duplicate lists: Einstein-Montefiore Institute for Clinical and Translational Research Biorepository lists: University of Rochester Program for Brain Tumors and Spinal Tumors lists: Case Western Reserve Tissue Procurement and Histology Core Facility lists: Human Tissue Resource Network lists: Boston University Biospecimen Archive Research Core lists: Adenoma Polyp Tissue Bank lists: Brown Brain Tissue Resource Center lists: Texas A and M Health Science Center MSC Distribution lists: JAX Cre Repository lists: Jackson Laboratory Neurobiology lists: WaNPRC Pathology and Tissue Program lists: Geisinger Biobank lists: KI Biobank lists: KI Biobank - KOL lists: Cell Line Knowledge Base lists: KI Biobank - SCI lists: Janus Serum Bank lists: KI Biobank - GEMS lists: KI Biobank - TBI lists: KI Biobank - EIMS lists: KI Biobank - IMSE lists: Vector Database lists: KI Biobank - BROAD lists: KI Biobank - SBP lists: KI Biobank STAGE-ADHD lists: KI Biobank - STANLEY lists: KI Biobank - STAR lists: KI Biobank - EuroClot lists: KI Biobank - Economical Behavior lists: CATSS - Child and Adolescent Twin Study in Sweden lists: DOGSS lists: UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology lists: KI Biobank - SATSA lists: FaceBase Biorepository lists: KI Biobank - SALTY lists: KI Biobank - STAGE lists: KI Biobank - TwinGene lists: BIOAIR - BIOmarkers in severe Chronic AIRway Disease lists: KI Biobank - NOAK lists: OLIN - Obstructive Lung disease in Northern Sweden lists: Cancer of the Prostate in Sweden (CAPS) lists: KI Biobank - CEFALO lists: ICAP - Integrated analysis of prostate cancer lists: LIBRO-1: Individualized prediction and prevention of breast cancer lists: KI Biobank - PROCAP lists: SCALE - Scandinavian lymphoma etiology lists: SPSAC - Stockholm PSA Cohort lists: KI Biobank - Tissue Biobank lists: KI Biobank - CEFAM lists: KI Biobank - PAROKRANK lists: KI Biobank - Sodertaljehjartan lists: CreZOO lists: European Mouse Mutant Archive lists: Toronto Centre for Phenogenomics lists: CMMR - Canadian Mouse Mutant Repository lists: NHMRC Australian PhenomeBank lists: Australian Phenomics Network lists: International Mouse Phenotyping Consortium (IMPC) lists: ZMP lists: Sanger Mouse Resources Portal lists: Chimpanzee Biomedical Research Resource lists: Owl Monkey Breeding and Research Resource lists: Squirrel Monkey Breeding and Research Resource lists: Human Developmental Biology Resource lists: MouseBook lists: Ambystoma Genetic Stock Center lists: Chordoma Foundation Biobank lists: Biobank Ireland Trust lists: UCSF Brain Tumor Tissue Bank lists: Bloomington Drosophila Stock Center lists: NIDDK Central Repository lists: VA Biorepository Brain Bank lists: University of Florida DNA and Tissue Bank lists: Wake Forest Cynomolgus Breeding Colony lists: CCUG: Culture Collection; University of Goteborg; Sweden lists: Dictyostelium discoideum genome database lists: Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center lists: NCI Breast and Colon Cancer Family Registries lists: British Columbia Breast Cancer Tumour Bank lists: Wake Forest Vervet Research Colony lists: NIMH Stem Cell Center lists: Musculoskeletal Transplant Foundation - MTF lists: NIMH Repository and Genomics Resources lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: Collaborative Studies on Genetics of Alcoholism lists: National Swine Resource and Research Center lists: National Center for Research Resources - Primate Resources lists: Confederation of Cancer Banks lists: zfishbook lists: SIU CADRD Dementia Brain Autopsy Program lists: Allograft Resources lists: AASK Clinical Trial and Cohort Study lists: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France lists: Stanford Center for Narcolepsy lists: Xenopus Gene Collection lists: Mammalian Gene Collection lists: Parkinsons UK Brain Bank lists: Zebrafish Gene Collection lists: Stanley Brain Collection lists: Boston Area Community Health Survey lists: Central New York Eye and Tissue Bank lists: Chromosome 7 Annotation Project lists: New York Brain Bank at Columbia University lists: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource lists: National Cell Repository for Alzheimer's Disease lists: NIA Aged Rodent Colonies lists: Knockout Mouse Project Repository lists: NINDS/UCLA Repository for Parkinson's Disease Mouse Models lists: Aging Cell Repository lists: Mouse Mutagenesis Center for Developmental Defects lists: National NeuroAIDS Tissue Consortium lists: NIA Nonhuman Primate Tissue Bank lists: National Alzheimer's Coordinating Center lists: NIA Mutant Mouse Aging Colony Handbook lists: JAX Mice: Neural Tube Defects lists: Caenorhabditis Genetics Center lists: Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core lists: NUgene Project lists: JAX Neuroscience Mutagenesis Facility lists: Hyper Cell Line Database lists: CHARTER - CNS HIV Antiretroviral Therapy Effects Research lists: BayGenomics lists: Alzheimer's Disease Cooperative Study lists: Baboon Research Resouces lists: Rhesus Monkey Breeding and Research lists: Mouse Mutant Resource lists: EMD4Biosciences lists: German Gene Trap Consortium lists: STRIDE Virtual Biospecimen Bank lists: Stanford/VA Aging Clinical Research Center lists: Spanish National Tumour Bank Network lists: Bioserve Global BioRepository lists: Saint-Luc Tumour Bank lists: Virgin Health Bank lists: UM Brain Endowment Bank lists: Manitoba Breast Tumor Bank lists: NIMH Brain Tissue Collection lists: UCL-RFH BioBank lists: Coriell Institute Stem Cell Biobank lists: MassGeneral Institute for Neurodegenerative Disease lists: Mayo Clinic Jacksonville: Neuropathology and Microscopy lists: NYU Alzheimer's Disease Center lists: Brain Research Institute Biobank Resources lists: Johns Hopkins Alzheimer's Disease Research Center lists: Rush Alzheimer's Disease Center lists: Massachusetts Alzheimer's Disease Research Center lists: University of Kentucky's Alzheimer's Disease Center lists: Michigan Alzheimer's Disease Center Brain Bank lists: Washington University Knight Alzheimer's Disease Research Center lists: Mount Sinai Alzheimer's Disease Research Center lists: Taub Institute for Research on Alzheimers Disease and the Aging Brain lists: Institute for Basic Research in Developmental Disabilities lists: Vietnam Era Twin Registry Biospecimen Repository lists: Study of Womens Health Across the Nation (SWAN) Repository lists: Dynamics of Health Aging and Body Composition (Health ABC) lists: University of Pennslyvania Brain Bank lists: Layton Center Biomarkers and Genetics lists: MUSC Center on Aging Campbell Neuropathology Laboratory lists: UT Southwestern ADC Brain Tissue Donation Program lists: KI Biobank - Parkinson lists: KI Biobank - EXT lists: GIA Brain Bank Program lists: KI Biobank - ALF lists: KI Biobank - HARMONY lists: Twin Study of Child and Adolescent Development - TCHAD lists: SHEEP - Stockholm Heart Epidemiology Program lists: CreZoo lists: Fleming Database lists: Los Angeles Family and Neighborhood Survey lists: Health and Retirement Study lists: Iowa 65+ Rural Health Study lists: National Long Term Care Survey lists: National Social Life Health and Aging Project (NSHAP) lists: Framingham Heart Study lists: Integrated Cell Lines lists: Chronic Renal Insufficiency Cohort Study lists: PrecisionMed lists: Biopta lists: Manhattan HIV Brain Bank lists: LifeGene lists: Puget Sound Blood Center lists: Fisher BioServices lists: National Psoriasis BioBank lists: StemCure Tissue Banking lists: ProMedDx lists: Biological Resource Centre - National Institute for Cancer Research lists: Coriell Biobank lists: StemSave lists: Dublin Brain Bank lists: Mayo Mitochondrial Disease Biobank lists: NIA Aged Rodent Tissue Bank lists: MVZ Collections lists: CARTaGENE lists: European Collection of Cell Cultures lists: UK DNA Banking Network lists: Biobanc USA lists: Rutgers Cell and DNA Repository lists: Genetic Alliance Biobank lists: Hunt Biobank lists: Advanced Biohealing, Inc. lists: Edinburgh Brain and Tissue Banks lists: JCM lists: Movement Disorders Biobank lists: Surgical Biologics - a MiMedx Group Company lists: Chernobyl Tissue Bank lists: Tissue Solutions lists: Conversant Biologics Inc. lists: Narayana Hrudayalaya Tissue Bank and Stem Cell Research Center lists: AlloSource lists: PathServe lists: UC Davis Alzheimers Disease Center - Resources lists: Asterand lists: RTI Biologics lists: Mayo Clinic Biobank lists: Lifelines Biobank lists: Mayo Validation Support Services Biobank lists: LifeNet Health lists: Medical Biobank lists: Fraunhofer Institute for Biomedical Engineering lists: BWH Specimen Bank lists: University of Minnesota Bionet - Academic Health Center lists: DF/HCC DNA Resource Core lists: Indiana Alzheimer Disease Center lists: UK Biobank lists: National Institute on Drug Abuse Center for Genetic Studies lists: Oregon Brain Bank lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: Northwestern CNADC Tissue Bank / Neuropathology Core lists: Loyola University Medical Center / Hines VA Brain Bank lists: Trinity Biobank lists: SAPALDIA lists: Ohio U Diabetes Endocrine Biorepository lists: National Cell Culture Center lists: Diabetic Complications Consortium lists: Xenbase lists: Blueprint Epigenome lists: EBiSC lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Parkinson's Progression Markers Initiative lists: OriGene lists: University of Nottingham NASC Nottingham Arabidopsis Stock Centre is related to: Rat Resource and Research Center is related to: Honey Bee Brain EST Project is related to: Islet Cell Resource Centers is related to: Special Mouse Strains Resource is related to: NIH Human Pluripotent Stem Cell Registry is related to: Harvard Brain Tissue Resource Center is related to: Louisiana Organ Procurement Agency - LOPA is related to: Washington Regional Transplant Community - WRTC is related to: Minnesota Liver Tissue Cell Distribution System is related to: Zebrafish International Resource Center is related to: Bloomington Drosophila Stock Center is related to: National Swine Resource and Research Center is related to: Xenopus Gene Collection is related to: Mammalian Gene Collection is related to: Zebrafish Gene Collection is related to: Mouse Mutagenesis Center for Developmental Defects is related to: NIA Mutant Mouse Aging Colony Handbook is related to: Manhattan HIV Brain Bank is related to: National Institute on Drug Abuse Center for Genetic Studies is related to: International Mouse Strain Resource is related to: Jackson Laboratory is related to: Rat Genome Database (RGD) is related to: VISTA Enhancer Browser is related to: GenitoUrinary Development Molecular Anatomy Project is related to: Coriell Cell Repositories is related to: NICHD Brain and Tissue Bank for Developmental Disorders is related to: Human Brain and Spinal Fluid Resource Center is related to: UM Brain Endowment Bank has parent organization: One Mind for Research has parent organization: Neuroscience Information Framework |
The community can contribute to this resource, Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource | nlx_143622 | https://neuinfo.org/mynif/search.php?q=*&cf=Biospecimen&t=indexable&nif=nlx_143622-1 http://neuinfo.org/onemind/index.php?q=*&b=0&r=20 | SCR_004193 | One Mind: One Voice Bio-repository Cosmic Landscape, One Mind Biospecimen Banks | 2026-08-04 09:41:05 | 0 | ||||||
|
Mammalian Gene Collection Resource Report Resource Website 10+ mentions |
Mammalian Gene Collection (RRID:SCR_007024) | MGC | cell repository, material resource, biomaterial supply resource | NIH initiative project to provide full-length open reading frame (FL-ORF) clones for human, mouse, and rat genes, cow. MGC cDNA clones were obtained by screening of cDNA libraries, by transcript-specific RT-PCR cloning, and by DNA synthesis of cDNA inserts. All MGC sequences are deposited in GenBank and clones can be purchased from distributors of IMAGE consortium. With conclusion of MGC project in March 2009, GenBank records of MGC sequences will be frozen, without further updates. Since definition of what constitutes full-length coding region for some of genes and transcripts for which they have MGC clones will likely change in future, users planning to order MGC clones will need to monitor for these changes. Users can make use of genome browsers and gene-specific databases, such as the UCSC Genome browser, NCBI's Map Viewer, and Entrez Gene, to view relevant regions of genome (browsers) or gene-related information (Entrez Gene). | cell line, cdna, frozen, clone, vector, gene, open reading frame, sequence, expressed sequence tag, bio.tools, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is listed by: bio.tools is listed by: Debian is related to: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: ATCC is related to: GenBank is related to: Invitrogen Clones is related to: Open Biosystems is related to: Zebrafish Gene Collection has parent organization: National Cancer Institute |
NIH Blueprint for Neuroscience Research | Free, Freely available | biotools:mammalian_gene_collection, nif-0000-00195 | https://bio.tools/mammalian_gene_collection | SCR_007024 | Mammalian Gene Collection | 2026-08-04 09:41:44 | 46 | |||||
|
Mouse Mutagenesis Center for Developmental Defects Resource Report Resource Website |
Mouse Mutagenesis Center for Developmental Defects (RRID:SCR_007321) | Mouse Mutagenesis for Developmental Defects | material resource, reagent supplier | THIS RESOURCE IS NO LONGER IN SERVICE. For updated mutant information, please visit MMRRC or The Jackson Laboratory. Produces, characterizes, and distributes mutant mouse strains with defects in embryonic and postembryonic development. The goal of the ENU Mutagenesis project III is to determine the function of genes on mouse Chromosome 11 by saturating the chromosome with recessive mutations. The distal 40 cM of mouse Chr 11 exhibits linkage conservation with human Chromosome 17. We are using the chemical N-ethyl-N-nitrosourea (ENU) to saturate wild type chromosomes with point mutations. By determining the function of genes on a mouse chromosome, we can extrapolate to predict function on a human chromosome. We expect many of the new mutants to represent models of human diseases such as birth defects, patterning defects, growth and endocrine defects, neurological anomalies, and blood defects. Because many of the mutations we expect to isolate may be lethal or detrimental to the mice, we are using a unique approach to isolate mutations. This approach uses a balancer chromosome that is homozygous lethal and carries a dominant coat color marker to suppress recombination over a reasonable interval. | mutant, embryo, post embryonic, mutagenesis, craniofacial, eye, fertility, growth, lethal, metabolism, neurological, skeletal, skin, coat, urogenital, cryopreserved, enu, defect, birth defect, , patterning defect, growth defect, endocrine defects, neurological anomaly, blood defect, mouse model, human disease, n-ethyl-n-nitrosourea, chromosome 11, phenotype |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: Mutant Mouse Resource and Research Center is related to: Jackson Laboratory has parent organization: Baylor University; Texas; USA |
Aging | NICHD ; NIGMS ; NIA ; NIAMS ; NHLBI ; NIDDK ; NIDCR ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00190 | SCR_007321 | NIH Mouse Mutagenesis Center for Developmental Defects | 2026-08-04 09:41:49 | 0 | |||||
|
CMMR - Canadian Mouse Mutant Repository Resource Report Resource Website 10+ mentions |
CMMR - Canadian Mouse Mutant Repository (RRID:SCR_006144) | CMMR | cell repository, material resource, biomaterial supply resource | Central repository for the physical archive and distribution of cryopreserved ES cells, spermatozoa, ova, embryos, and non-germ cell tissue DNA generated by Canada''''s mouse genome effort. The CMMR acts in coordination with other repositories worldwide and is establishing a nation-wide network of repository nodes to house sub-sets of the resources generated across Canada. The CMMR is the repository and distribution center for the North American Conditional Mouse Mutagenesis project (NorCOMM). The CMMR also collects and stores somatic tissue from mouse models in a variety of formats (fixed, embedded, and glass-slide mounted) enabling world wide access to specimens from established mouse models. Services include: * Embryo cryopreservation and recovery * Ovary cryopreservation and recovery * Ovary transplant * Sperm cryopreservation and recovery * Strain services, including rederivation by IVF, speed expansion and strain rescue * NorCOMM ES cell withdrawal * Non-NorCOMM ES cell expansion | RIN, Resource Information Network, live mouse, embryo, germ cell, tissue, embryonic stem cell, mutant, mouse model, spermatozoa, cell, ova, dna, sperm, phenotyping, genetic mapping, pathology, genetic engineering, clone, RRID Community Authority |
is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: North American Conditional Mouse Mutagenesis Project is related to: North American Conditional Mouse Mutagenesis Project is related to: Centre for Modeling Human Disease Gene Trap Resource is related to: International Knockout Mouse Consortium has parent organization: Toronto Centre for Phenogenomics provides: Knockout Mouse Project Repository works with: International Mouse Strain Resource |
Genome Canada ; Charles River Canada |
Public | nlx_151634 | SCR_006144 | Canadian Mouse Mutant Repository | 2026-08-04 09:41:31 | 10 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
