Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GenomeSpy Resource Report Resource Website 1+ mentions |
GenomeSpy (RRID:SCR_024837) | software toolkit, software resource | Software visualization grammar and GPU-accelerated toolkit for genomic data. Visualization grammar and GPU-accelerated rendering engine for genomic data. Grammar based toolkit for authoring tailored, interactive visualizations for genomic data analysis. | Grammar based toolkit, authoring tailored interactive visualizations, genomic data analysis, | has parent organization: University of Helsinki; Helsinki; Finland | European Union's Horizon 2020 Research and Innovation Programme | DOI:10.1101/2023.10.06.561159 | Free, Available for download, Freely available | https://github.com/genome-spy/genome-spy | SCR_024837 | 2026-08-09 09:08:34 | 1 | |||||||
|
SomaticSeq Resource Report Resource Website 1+ mentions |
SomaticSeq (RRID:SCR_024891) | software toolkit, software resource | Software accurate somatic mutation detection pipeline implementing stochastic boosting algorithm to produce somatic mutation calls for both single nucleotide variants and small insertions and deletions. NGS variant calling and classification. | NGS variant calling and classification, somatic mutation detection, somatic mutation calls, single nucleotide variants, detect somatic mutations, | NIGMS R01 GM109836; NHGRI R01 HG007834 |
PMID:26381235 | SCR_024891 | 2026-08-09 09:09:07 | 6 | ||||||||||
|
Adobe Fresco Resource Report Resource Website 1+ mentions |
Adobe Fresco (RRID:SCR_024887) | software application, software resource | Software digital painting and drawing application. Used to create figures. Built for the latest stylus and touch devices, now including iPhones. Collection of vector and raster brushes, live brushes, to deliver natural painting and drawing experience.Vector and raster graphics editor developed by Adobe primarily for digital painting. Originally designed for the Apple iPad with Pencil support. | Adobe, collection of vector and raster brushes, live brushes, digital painting and drawing, | Restricted | SCR_024887 | 2026-08-09 09:08:34 | 1 | |||||||||||
|
FMRIB's Automated Segmentation Tool Resource Report Resource Website 1+ mentions |
FMRIB's Automated Segmentation Tool (RRID:SCR_024920) | FAST | software application, software resource | Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction. | Functional Magnetic Resonance Imaging of the Brain, segment 3D image of brain, segment 3D image, brain image, different tissue types, spatial intensity variations corrections, bias field, RF inhomogeneities, | is a plug in for: FSL | Free, Freely available | SCR_024920 | FAST:FMRIB's Automated Segmentation Tool, Functional Magnetic Resonance Imaging of the Brain's Automated Segmentation Tool | 2026-08-09 09:08:35 | 8 | ||||||||
|
FNIRT Resource Report Resource Website 10+ mentions |
FNIRT (RRID:SCR_024923) | software application, software resource | Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another. | perform linear registration, translate, rotate, zoom, shear, image, match image with another image, | is a plug in for: FSL | Free, Freely available | SCR_024923 | 2026-08-09 09:08:35 | 10 | ||||||||||
|
SIENAX Resource Report Resource Website |
SIENAX (RRID:SCR_024926) | software application, software resource | Software tool to estimate total brain tissue volume, from single image, normalized for skull size. | estimate total brain tissue volume, single image, normalized for skull size, |
is related to: SIENA is a plug in for: FSL |
Free, Freely available | https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/SIENA/UserGuide#SIENAX_-_Single-Time-Point_Estimation | SCR_024926 | 2026-08-09 09:08:35 | 0 | |||||||||
|
fsl-cluster Resource Report Resource Website |
fsl-cluster (RRID:SCR_024938) | software application, software resource | Software application used to form clusters, report information about clusters and/or perform cluster based inference. | FSL, form clusters, report information about clusters, perform cluster based inference, | is a plug in for: FSL | Free, Freely available | SCR_024938 | cluster | 2026-08-09 09:09:08 | 0 | |||||||||
|
XTRACT Resource Report Resource Website 1+ mentions |
XTRACT (RRID:SCR_024933) | software application, software resource | Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. | automated tractography, tractography, human, macaque, brain | is a plug in for: FSL | Medical Research Council PhD Studentship UK ; Marie Skłodowska-Curie Individual Fellowship Grant ; Biotechnology and Biological Sciences Research Council ; Netherlands Organization for Scientific Research NWO Netherlands ; Sir Henry Dale Wellcome Trust Fellowship UK ; MRC Career Development Fellowship UK ; Wellcome Trust Collaborative Award UK ; UK Engineering and Physical Sciences Research Council ; Wellcome Trust grant UK ; Human Connectome Project ; NIMH 1U54MH091657; McDonnell Center for Systems Neuroscience at Washington University ; NIH ; UK Biobank Resource ; Wellcome Trust |
PMID:32407993 | Free, Freely available | SCR_024933 | 2026-08-09 09:09:08 | 4 | ||||||||
|
randomise Resource Report Resource Website 10+ mentions |
randomise (RRID:SCR_024937) | software application, software resource | Software tool for nonparametric permutation inference on neuroimaging data. | nonparametric permutation inference, neuroimaging data | is a plug in for: FSL | PMID:24530839 | Free, Freely available | SCR_024937 | 2026-08-09 09:08:35 | 12 | |||||||||
|
combi Resource Report Resource Website 1+ mentions |
combi (RRID:SCR_024986) | software toolkit, software resource | Software R package for simultaneous exploration of multiple datasets. Compositional omics model based visual integration.Used to integrate omics data for visualization, with special focus on compositionality. | integrate omics data for visualization, simultaneous exploration, multiple datasets, visual integration, joint visualization, including sample variables in analysis, | is listed by: Bioconductor | Johnson and Johnson | PMID:33575602 | Free, Available for download, Freely available | SCR_024986 | Compositional Omics Model-Based Integration | 2026-08-09 09:08:36 | 1 | |||||||
|
table1 Resource Report Resource Website 1+ mentions |
table1 (RRID:SCR_024900) | software toolkit, software resource | Software R package to create HTML tables of descriptive statistics, as one would expect to see as the first table in medical epidemiological journal article. Used for generating tables of descriptive statistics in HTML. | HTML, generate tables, create HTML tables, descriptive statistics, first table, medical, epidemiological, journal article, | Free, Available for download, Freely available | https://github.com/benjaminrich/table1, https://cran.r-project.org/web/packages/table1/vignettes/table1-examples.html | SCR_024900 | 2026-08-09 09:09:07 | 3 | ||||||||||
|
Qt Creator Resource Report Resource Website 1+ mentions |
Qt Creator (RRID:SCR_024883) | software application, software resource | Cross-platform, complete Integrated Development Environment for application developers to create applications for multiple desktop, embedded, and mobile device platforms, such as Android and iOS. It is available for Linux, macOS and Windows operating systems. In addition, you can use the experimental WebAssembly plugin to build applications in web format and run them in web browsers. | Qt Group, integrated development environment, cross-platform Qt IDE, cross-platform Qt Integrated Development Environment, application developers, create applications, | Restricted | https://www.qt.io/?search=Qt+Creator | SCR_024883 | 2026-08-09 09:08:34 | 2 | ||||||||||
|
Arduino IDE Resource Report Resource Website 10+ mentions |
Arduino IDE (RRID:SCR_024884) | source code, software resource | Open-source physical computing platform based on I/O board and development environment that implements the Processing/Wiring language. Arduino can be used to develop stand-alone interactive objects or can be connected to software on your computer. | physical computing platform, develop stand-alone interactive objects, connected to software, | Free, Available for download, Freely available | https://www.arduino.cc/en/software, https://github.com/arduino/arduino-ide?tab=readme-ov-file, https://docs.arduino.cc/software/ide/#ide-v2 | SCR_024884 | , Arduino Integrated Development Environment, Arduino IDE 2.2., Arduino IDE 2.0, Arduino IDE 2.x, Arduino IDE 1.x | 2026-08-09 09:09:07 | 48 | |||||||||
|
3DHISTECH SlideViewer Resource Report Resource Website 10+ mentions |
3DHISTECH SlideViewer (RRID:SCR_024885) | software application, software resource | Software tool for working with whole slide images. Digital microscope application for supporting histopathological diagnostic workflow and microscope examination process. Advanced slide viewing software used in clinical pathology and research. | 3DHISTECH Ltd, Digital microscope application, working with whole slide images, supporting histopathological diagnostic workflow, supporting microscope examination process, | Free, Available for download, Freely available | SCR_024885 | SlideViewer | 2026-08-09 09:09:03 | 16 | ||||||||||
|
Multivariate Exploratory Linear Optimized Decomposition into Independent Components Resource Report Resource Website 10+ mentions |
Multivariate Exploratory Linear Optimized Decomposition into Independent Components (RRID:SCR_024916) | MELODIC | software application, software resource | Software tool to use at both the subject and group level to decompose FMRI data into time courses and spatial maps using Independent Component Analysis. Used to decompose single or multiple 4D data sets into different spatial and temporal components. | Independent Component Analysis, decompose FMRI data, decompose single or multiple 4D data sets, spatial and temporal components, | is a plug in for: FSL | Free, Freely available | SCR_024916 | MELODIC:Multivariate Exploratory Linear Optimized Decomposition into Independent Components | 2026-08-09 09:09:03 | 32 | ||||||||
|
FABBER Resource Report Resource Website |
FABBER (RRID:SCR_024917) | software application, software resource | Software command-line tool for approximate Bayesian inference using generative signal models. | command-line tool, approximate Bayesian inference, generative signal models, | is a plug in for: FSL | Free, Freely available, | SCR_024917 | 2026-08-09 09:08:35 | 0 | ||||||||||
|
VERBENA Resource Report Resource Website |
VERBENA (RRID:SCR_024919) | software application, software resource | Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain. | Dynamic Susceptibility Contrast, quantification of perfusion, haemodynamic parameters, Dynamic Susceptibility Contrast perfusion MRI, brain | is a plug in for: FSL | Free, Freely available | SCR_024919 | VERBENA:Vascular Model Based Perfusion Quantification for DSC-MRI | 2026-08-09 09:09:04 | 0 | |||||||||
|
PS:Power and Sample Size Calculation Resource Report Resource Website 10+ mentions |
PS:Power and Sample Size Calculation (RRID:SCR_024912) | PS | software application, software resource | Software application as interactive program for performing power and sample size calculations. Can determine the sample size needed to detect specified alternative hypothesis with required power, the power with which specific alternative hypothesis can be detected with given sample size, or the specific alternative hypotheses that can be detected with given power and sample size. | interactive program for performing power and sample size calculations, power and sample size calculations, | PMID:9875838 | Free, Available for download, Freely available | SCR_024912 | 2026-08-09 09:09:07 | 16 | |||||||||
|
Daphnia Atlas Resource Report Resource Website 1+ mentions |
Daphnia Atlas (RRID:SCR_024913) | data or information resource, atlas, reference atlas | Whole organism atlas utilizing 2D and 3D imaging. Atlas at cellular resolution serves as foundation for characterization of tissue and cellular change in Daphnia. | Whole organism atlas, Daphnia, characterization of tissue and cellular change, 2D imaging, 3D imaging, | Penn State Human Health and Environment Seed Grant ; Pennsylvania Department of Health Commonwealth Universal Research Enhancement Program Grant ; NIH Office of the Director R24OD18559; European Unions Horizon 2020 |
DOI:10.1101/2022.03.09.483544 | Free, Freely available, | SCR_024913 | 2026-08-09 09:09:03 | 1 | |||||||||
|
Guided Sparse Factor Analysis Resource Report Resource Website 1+ mentions |
Guided Sparse Factor Analysis (RRID:SCR_025023) | GSFA | software toolkit, software resource | Software R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single cell CRISPR screening data. | sparse factor analysis, differential gene expression, discovery simultaneously, single cell CRISPR screening data, | NIMH R01MH110531; NHGRI R01HG010773; NIMH R01MH116281; NIGMS R01 GM126553; NHGRI R01 HG011883; NSF ; Sloan Research Fellowship |
PMID:37770710 | Free, Available for download, Freely available | SCR_025023 | 2026-08-09 09:09:09 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
