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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BLADE Resource Report Resource Website 100+ mentions |
BLADE (RRID:SCR_009132) | BLADE | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154246 | SCR_009132 | Bayesian LinkAge DisEquilibrium mapping | 2026-08-09 09:04:57 | 116 | ||||||||
|
RECORD Resource Report Resource Website 1000+ mentions |
RECORD (RRID:SCR_009097) | RECORD | software application, software resource | Software application that can be used for the ordering of loci on genetic linkage maps. The method is based on minimisation of the total number of recombination events. Since the criterion does not require intensive calculations, the algorithm rapidly produces an optimal ordering as well as a series of near-optimal ones. The latter provides insight into the local certainty of ordering along the map. RECORD can deal with the following types of mapping populations: BC1, F2, F3, RILs (in fact any generation obtained by repeated selfing of a hybrid between homozygous parents). Data files are .LOC JoinMap format. Mapping populations from non-inbreds should be split into BC1 or HAP data that represent the maternal and paternal gametes. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (win98, xp) and ms-dos | is listed by: Genetic Analysis Software | nlx_154153 | SCR_009097 | REcombination Counting and ORDering | 2026-08-09 09:05:08 | 1337 | ||||||||
|
TDT-AE Resource Report Resource Website 1+ mentions |
TDT-AE (RRID:SCR_009094) | TDT-AE | software application, software resource | Software program that computes a likelihood-based transmission disequilibrium test. The data are genotypes on trios (father, mother, affected child) in which random genotyping errors leading to Mendelian inconsistencies may or may not have occurred. This program computes the TDT-AE statistic on all trios (whether Mendelianly consistent or not) and thereby maintains a correct type I error rate in the presence of random genotyping errors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, (2000/dos), unix, (sun solaris), linux, (redhat) | is listed by: Genetic Analysis Software | PMID:11443542 | nlx_154112 | ftp://linkage.rockefeller.edu/software/tdtae2 | SCR_009094 | Transmission Disequilibrium Test Allowing for Errors | 2026-08-09 09:05:08 | 2 | ||||||
|
GENOMIZER Resource Report Resource Website 1+ mentions |
GENOMIZER (RRID:SCR_009127) | GENOMIZER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A platform independent Java program for the analysis of genome wide association experiments. (entry from Genetic Analysis Software). | gene, genetic, genomic, java, ms-windows, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154349 | http://www.ikmb.uni-kiel.de/genomizer/ | SCR_009127 | 2026-08-09 09:05:05 | 3 | |||||||
|
GENEPOOL Resource Report Resource Website 10+ mentions |
GENEPOOL (RRID:SCR_009087) | GENEPOOL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that provides analysis tools for the detection of shifts in relative allele frequency between pooled genomic DNA from cases and controls using SNP-based genotyping microarrays. GenePool supports genotyping platforms from Affymetrix and Illumina. | gene, genetic, genomic, c/c++/perl, linux, macos, (should compile on most unix systems with gcc) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154104 | SCR_009087 | 2026-08-09 09:05:08 | 48 | ||||||||
|
ANALYZE Resource Report Resource Website 1000+ mentions |
ANALYZE (RRID:SCR_009120) | ANALYZE | software application, software resource | A set of useful accessory programs to the LINKAGE package. It simplifies the performance of a large array of parametric and nonparametric tests for linkage and association on data entered in LINKAGE format pedigree and parameter files. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, unix, sunos, solaris, osf1 |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154223 | SCR_009120 | 2026-08-09 09:04:57 | 1119 | |||||||||
|
EPISTACY Resource Report Resource Website 1+ mentions |
EPISTACY (RRID:SCR_009088) | EPISTACY | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, sas | is listed by: Genetic Analysis Software | nlx_154105 | SCR_009088 | 2026-08-09 09:04:56 | 1 | |||||||||
|
R/QTL Resource Report Resource Website 1000+ mentions |
R/QTL (RRID:SCR_009085) | R/QTL | software application, software resource | Software program for mapping quantitative trait loci in experimental crosses. (entry from Genetic Analysis Software) | gene, genetic, genomic, c and r, unix, ms-windows, macos |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
DOI:10.1093/bioinformatics/btg112 | OMICS_07093, nlx_154097 | https://sources.debian.org/src/r-cran-qtl/ | SCR_009085 | 2026-08-09 09:04:56 | 1008 | |||||||
|
QUANTO Resource Report Resource Website 500+ mentions |
QUANTO (RRID:SCR_009084) | QUANTO | software application, software resource | Software program that computes sample size or power for association studies of genes, environmental factors, gene-environment interaction, or gene-gene interaction. Available study designs for a disease (binary) outcome include the unmatched case-control, matched case-control, case-sibling, case-parent, and case-only designs. Study designs for a quantitative tra it include independent individuals and case parent designs. Quanto is a 32-bit Windows application requiring Windows 95, 98, NT, 2000, ME or XP to run. The graphical user interface allows th e user to easily change the model and view the results without having to edit an input file and rerun the program for every model. The results of a session are stored to a log file. This log can be printed or saved to a file for reviewing at a later date. An option is included to create a text file of the log that can be imported into other documents. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (98/nt/2000/..) |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154095 | SCR_009084 | 2026-08-09 09:05:08 | 927 | |||||||||
|
BOTTLENECK Resource Report Resource Website 100+ mentions |
BOTTLENECK (RRID:SCR_009082) | BOTTLENECK | software application, software resource | Software application for detecting recent effective population size reductions from allele data frequencies (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (95) | is listed by: Genetic Analysis Software | nlx_154093 | SCR_009082 | 2026-08-09 09:04:56 | 493 | |||||||||
|
CHROMOSCAN Resource Report Resource Website 1+ mentions |
CHROMOSCAN (RRID:SCR_009151) | CHROMOSCAN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that is an implementation of a genome-based scan statistic that detects genomic regions. | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154270 | http://www.epidkardia.sph.umich.edu/software/chromoscan/ | SCR_009151 | 2026-08-09 09:04:57 | 2 | |||||||
|
CHIAMO Resource Report Resource Website 1+ mentions |
CHIAMO (RRID:SCR_009150) | CHIAMO | software application, software resource | Software application for calling genotypes from the Affymetrix 500K Mapping chip. The program allows for multiple cohorts which have potentially different intensity characteristics that can lead to elevated false-positive rates in genome-wide studies. The underlying model has a hierarchical structure that allows for correlation between the parameters of each cohort. The output files produced by CHIAMO feed directly into both the programs SNPTEST and IMPUTE. CHIAMO was used to call genotypes for the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC). | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154269 | http://www.stats.ox.ac.uk/~marchini/software/gwas/chiamo.html | SCR_009150 | 2026-08-09 09:05:10 | 2 | ||||||||
|
CHECKMATRIX Resource Report Resource Website 1+ mentions |
CHECKMATRIX (RRID:SCR_009149) | CHECKMATRIX | software application, software resource | Software application that serves as a visualization tool to validate constructed genetic maps. CheckMatrix generates graphical genotypes and two-dimensional heat plots of pairwise scores. Visualization of regions with positive and negative linkage as well as of allele fraction per marker simplifies genetic map validation without applying statistical approaches. CheckMatrix works in conjunction with MadMapper and freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154268 | SCR_009149 | PY_MATRIX_D | 2026-08-09 09:05:06 | 9 | ||||||||
|
EVOKER Resource Report Resource Website 1+ mentions |
EVOKER (RRID:SCR_009145) | EVOKER | software application, software resource | A graphical tool for visualizing genotype intensity data in order to assess genotype calls as part of quality control procedures for genome-wide association studies. It provides a solution to the computational and storage problems related to being able to work with the huge volumes of data generated by such projects by implementing a compact, binary format that allows rapid access to data, even with hundreds of thousands of observations. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, perl | is listed by: Genetic Analysis Software | nlx_154305 | SCR_009145 | 2026-08-09 09:04:57 | 8 | |||||||||
|
alpha helix coordinate frame simulation Resource Report Resource Website 1+ mentions |
alpha helix coordinate frame simulation (RRID:SCR_019320) | source code, software resource | Source code for alpha-helix simulation framework written in Matlab. Specifically tested on Talin-1 Rod Domain. | talin-1 (human), MATLAB, alpha-helix, simulation framework | is related to: MATLAB | Free, Available for download, Freely available | SCR_019320 | alpha-helix-coordinate-frame-simulation, alpha-helix coordinate frame simulation framework | 2026-08-09 09:07:51 | 1 | |||||||||
|
Meta-Prism Resource Report Resource Website 1+ mentions |
Meta-Prism (RRID:SCR_021836) | source code, software resource | Software tool as microbial community sample search method based on smart pair wise sample comparison without compromising accuracy. Used as microbial communities similarites calculation and comparison tool. | microbial community sample search, sample comparison, microbial communities similarites calculation | Free, Available for download, Freely available | SCR_021836 | Meta-Prism 2.0 | 2026-08-09 09:07:43 | 3 | ||||||||||
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flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | source code, software resource | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-08-09 09:08:08 | 1 | ||||||||
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sepsis3-amsterdamumcdb Resource Report Resource Website 1+ mentions |
sepsis3-amsterdamumcdb (RRID:SCR_022042) | source code, software resource | Repository contains files for implementing the Sepsis-3 definition in the freely-accessible Amsterdam University Medical Centers Database. | Sepsis-3 criteria, Amsterdam University Medical Centers Database | Restricted | SCR_022042 | Sepsis-3 in AmsterdamUMCdb | 2026-08-09 09:08:09 | 2 | ||||||||||
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HAPAR Resource Report Resource Website 1+ mentions |
HAPAR (RRID:SCR_009218) | HAPAR | software application, software resource | Software application to infer haplotype from genotype data. It uses the parsimony principle, i.e. try to find the minimum number of haplotypes that can reconstruct the input genotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window, unix, solaris | is listed by: Genetic Analysis Software | nlx_154373 | SCR_009218 | HAplotype inference by PARsimony | 2026-08-09 09:04:58 | 1 | ||||||||
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GTOOL Resource Report Resource Website 10+ mentions |
GTOOL (RRID:SCR_009215) | GTOOL | software application, software resource | Software application for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154368 | SCR_009215 | 2026-08-09 09:04:58 | 42 |
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