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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FASTLINK Resource Report Resource Website 50+ mentions |
FASTLINK (RRID:SCR_009177) | FASTLINK | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, .. and can also run in parallel on shared memory unix machines |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
PMID:8807326 | OMICS_28405, nlx_154309 | https://sources.debian.org/src/fastlink/ | SCR_009177 | faster version of LINKAGE LINKAGE | 2026-08-09 09:05:11 | 59 | ||||||
|
GLIDERS Resource Report Resource Website 1+ mentions |
GLIDERS (RRID:SCR_009210) | GLIDERS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154359 | SCR_009210 | Genome-wide LInkage DisEquilibrium Repository and Search engine | 2026-08-09 09:05:07 | 1 | |||||||
|
ERPA Resource Report Resource Website 1+ mentions |
ERPA (RRID:SCR_009173) | ERPA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for non-parametric analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154302 | SCR_009173 | Extended Relative Pair Analysis | 2026-08-09 09:05:06 | 7 | |||||||
|
EXOMEPICKS Resource Report Resource Website 1+ mentions |
EXOMEPICKS (RRID:SCR_009174) | EXOMEPICKS | software application, software resource | Software application that suggests individuals to be sequenced in a large pedigree. ExomePicks assumes that a genotyping chip or another cost effective means will be used to determine IBD sharing in the pedigree and that, subsequently, one would like to sequence a minimal number of individuals and use their sequences together with IBD information to deduce the sequence of other individuals in the pedigree. We are currently using it in the context of whole exome and whole genome sequencing studies to pick individuals to be sequenced from large family collections. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154306, biotools:exomepicks | https://bio.tools/exomepicks | SCR_009174 | 2026-08-09 09:05:11 | 6 | ||||||||
|
EMLD Resource Report Resource Website 1+ mentions |
EMLD (RRID:SCR_009171) | EMLD | software application, software resource | Software application to calculate pair-wise linkage disequilibrium based on SNP genotype data from unrelated individuals. EM algorithm is used to estimate pair-wise haplotype frequencies. The output file is in the format of input file for GOLD program, thus it can be directly plug into GOLD to get LD plots. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154298 | http://epi.mdanderson.org/~qhuang/Software/pub.htm | SCR_009171 | EM estimation of haplotype frequencies and LD calculation | 2026-08-09 09:05:11 | 4 | |||||||
|
EPDT Resource Report Resource Website 1+ mentions |
EPDT (RRID:SCR_009172) | EPDT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that for detecting linkage/disequilibrium signals # between genetic markers and disease loci, particularly if only one # or a few large pedigrees are available. The strategy differs from # conventional approaches that require at least a moderate number of # families to attain adequate statistical power. The proposed testing # procedure is advantageous in that it provides high statistical power # coupled with reduced sample collection. Furthermore, the proposed # method avoids problems such as potential population stratification # and genetic heterogeneity, and is robust with respect to misspecification # of phenotype. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154301 | SCR_009172 | Extended Pedigree Disequilibrium Test | 2026-08-09 09:04:58 | 1 | |||||||
|
GEVALT Resource Report Resource Website 1+ mentions |
GEVALT (RRID:SCR_009207) | GEVALT | software application, software resource | Software application designed to simplify and expedite the process of genotype analysis and disease association tests by providing a common interface to several common tasks relating to such analyses. It is aimed for analysis of unrelated individuals as well as two-generation families. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154354 | SCR_009207 | GEnotype Visualization and ALgorithmic Tool | 2026-08-09 09:05:07 | 6 | ||||||||
|
GGT Resource Report Resource Website 1+ mentions |
GGT (RRID:SCR_009208) | GGT | software application, software resource | Software application that combines genetic map data and locus data to display Graphical Genotypes. Data can be viewed by individual or by linkage group, and sorted on markers. Statistics are calculated and simultaneous filtering/selection on multiple linkage groups is possible. Output of hi-res genotype drawings directly to printer or to emf/jpeg/bitmap image. A module for constructing GGT-datafiles from common mapmaker/joinmap style formatted data is available. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, (pascal), ms-windows, (95/98/2000/xp) | is listed by: Genetic Analysis Software | nlx_154356 | http://www.dpw.wau.nl/pv/PUB/ggt/ | SCR_009208 | Graphical GenoTyping package MAPCOMP | 2026-08-09 09:05:12 | 1 | |||||||
|
GENOCHECK Resource Report Resource Website 1+ mentions |
GENOCHECK (RRID:SCR_009203) | GENOCHECK | software application, software resource | Software application designed to identify genotypes that are likely to be errors. The statistical method was designed to identify typing error rather than pedigree errors, but is general enough to pinpoint any unlikely genotype still consistent with Mendelian inheritance. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154345 | SCR_009203 | GenoCheck | 2026-08-09 09:04:58 | 7 | ||||||||
|
GENEWEAVER Resource Report Resource Website 10+ mentions |
GENEWEAVER (RRID:SCR_009202) | GENEWEAVER | software application, software resource | Software application for charting family medical/health history (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, (95/98/2000/nt/xp) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154343 | SCR_009202 | 2026-08-09 09:05:12 | 39 | ||||||||
|
EAGLET Resource Report Resource Website 1+ mentions |
EAGLET (RRID:SCR_009166) | EAGLET | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software package that provides a number of improved statistics for detecting linkage and estimating trait location. EAGLET uses multiple subsamples of dense SNP data to detect linkage with increased power, and to construct sharp 95% confidence intervals for the true trait location. | gene, genetic, genomic, perl, c, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154288 | SCR_009166 | Efficient Analysis of Genetic Linkage: Testing and Estimation | 2026-08-09 09:04:57 | 1 | |||||||
|
EASYLINKAGE/EASYLINKAGE-PLUS Resource Report Resource Website 1+ mentions |
EASYLINKAGE/EASYLINKAGE-PLUS (RRID:SCR_009167) | EASYLINKAGE/EASYLINKAGE-PLUS | software application, software resource | Software application that combines automated setup and performance of linkage analyses and simulation. The program package supports currently single-point linkage analyses, multi-point linkage analyses, and the simulation package SLink, and provides genome-wide as well as chromosomal postscript plots of LOD scores, NPL scores, P values, and other parameters. The software can analyze STRPs as well as SNP chip data from Affymetrix, Illumina, or self-defined SNP data. The program performs single- and multi-point simulation studies. | gene, genetic, genomic, perl, v5.8 (program can be provided as perl script or as a compiled exe for the use in windows), ms-windows, (2000/xp), linux | is listed by: Genetic Analysis Software | nlx_154289 | https://omictools.com/easylinkage-tool | http://compbio.charite.de/genetik/hoffmann/easyLINKAGE/ | SCR_009167 | 2026-08-09 09:05:06 | 5 | |||||||
|
DPPH Resource Report Resource Website 1000+ mentions |
DPPH (RRID:SCR_009164) | DPPH | software application, software resource | Software application that is similar to the BPPH program (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154287 | SCR_009164 | Direct method for Perfect Phylogeney Haplotyping | 2026-08-09 09:05:06 | 1148 | |||||||
|
GREGOR Resource Report Resource Website 10+ mentions |
GREGOR (RRID:SCR_009165) | GREGOR | software application, software resource | Software program that allows students and scientists to explore potential manifestations of genetic models and stochastic processes. It also provides a means to evaluate the effectiveness of statistical procedures such as linkage analysis or QTL detection. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154364 | http://gnome.agrenv.mcgill.ca/tinker/gregor.htm | SCR_009165 | 2026-08-09 09:05:11 | 47 | |||||||
|
MAKEPED Resource Report Resource Website 1+ mentions |
MAKEPED (RRID:SCR_009162) | MAKEPED | software application, software resource | Software application - part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154285 | SCR_009162 | MAKE PEDfiles | 2026-08-09 09:05:10 | 1 | ||||||||
|
DISENTANGLER Resource Report Resource Website 1+ mentions |
DISENTANGLER (RRID:SCR_009161) | DISENTANGLER | software application, software resource | Software application that is a visualization technique for linkage disequilibrium mapping and haplotype analysis of multiple multi-allelic genetic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, java/jre1.5, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154284, bIotools:disentangler | https://bio.tools/disentangler | SCR_009161 | 2026-08-09 09:05:06 | 6 | ||||||||
|
HPLUS Resource Report Resource Website 10+ mentions |
HPLUS (RRID:SCR_009239) | HPLUS | software application, software resource | An analysis tool for performing haplotype estimation on genetic markers such as SNPs and microsatellites. It is able to handle datasets that include case-control status as well as covariates and marker location variables (such as gene name, chromosome location, etc). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, linux | is listed by: Genetic Analysis Software | nlx_154400 | SCR_009239 | 2026-08-09 09:05:13 | 12 | |||||||||
|
GENEHUNTER-PLUS Resource Report Resource Website 1+ mentions |
GENEHUNTER-PLUS (RRID:SCR_009193) | GENEHUNTER-PLUS | software application, software resource | Software application that is a modification of the GENEHUNTER software package which produces output files containing the null and conditional distributions of the test statistic (in nullprobs.dat and probs.dat, respectively). These files can then be used as input to the ASM program which incorporates the allele sharing modeling for lodscores and likelihood ratio tests as developed by Kong and Cox (1997). (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154334 | SCR_009193 | GENEHUNTER-MODSCORE, GENEHUNTER-TWOLOCUS, ALLEGRO, GENEHUNTER, GENEHUNTER-IMPRINTING | 2026-08-09 09:05:11 | 1 | ||||||||
|
GENEFINDER Resource Report Resource Website 100+ mentions |
GENEFINDER (RRID:SCR_009190) | GENEFINDER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 21, 2016. Software application that uses GEE method to estimate the location of the susceptibility gene based on the allele-sharing of affected sib pairs for multiple markers. GENEFINDER can further the analysis of GENEHUNTER by providing a more accurate gene location estimation and the corresponding confidence interval. | gene, genetic, genomic, c++, ms-windows, ms-dos, unix, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154330 | SCR_009190 | 2026-08-09 09:05:11 | 174 | ||||||||
|
HAPLOTTER Resource Report Resource Website 10+ mentions |
HAPLOTTER (RRID:SCR_009229) | HAPLOTTER | software application, software resource | A web application that has been developed to display the results of a scan for positive selection in the human genome using the HapMap data. It can be used as a resource to examine various population genetic measures in a genomic region. Measures that are currently displayed include iHS (a statistic developed to detect recent positive selection), Fay and Wu''s H, Tajima''s D and Fst. (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154386 | SCR_009229 | 2026-08-09 09:05:07 | 20 |
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