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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Hays Resource Report Resource Website 50+ mentions |
Hays (RRID:SCR_008781) | Hays | job resource, commercial organization | UK and Australia scientific job board. | recruit, candidate, employment, career, united kingdom, australia, worldwide, job seeker, employer |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144166 | SCR_008781 | Hays: Recruiting experts worldwide | 2026-08-09 09:04:53 | 73 | ||||||||
|
ASPEX Resource Report Resource Website 1+ mentions |
ASPEX (RRID:SCR_008414) | ASPEX | software application, software resource | A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl, perl, (the graphic script requires xmgr, available from ftp://ftp.teleport.com/pub/users/pturner/acegr), unix, (solaris/sunos/irix/osf-1), linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154234, biotools:aspex | https://bio.tools/aspex | SCR_008414 | Affected Sib Pairs EXclusion map | 2026-08-09 09:04:50 | 9 | |||||||
|
GENEHUNTER++SAD Resource Report Resource Website |
GENEHUNTER++SAD (RRID:SCR_008777) | GENEHUNTER++SAD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154335 | SCR_008777 | 2026-08-09 09:04:53 | 0 | ||||||||
|
MAPMAKER/SIBS Resource Report Resource Website 1+ mentions |
MAPMAKER/SIBS (RRID:SCR_008012) | MAPMAKER/SIBS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Data analysis software for complete multipoint analysis. | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154465 | https://dsgweb.wustl.edu/aldi/software/manuals/mapmaker_sibs/mapmaker_sibs.pdf | ftp://ftp-genome.wi.mit.edu/distribution/software/sibs | SCR_008012 | GENEHUNTER | 2026-08-09 09:04:49 | 6 | |||||
|
GERON Resource Report Resource Website 1+ mentions |
GERON (RRID:SCR_008531) | GERON | software toolkit, software resource | A suite of web-based open source software programs for clinical and genetic study. The aims of this software development in the Laboratory of Neurogenetics, NIA, NIH are * Build retrievable clinical data repository * Set up genetic data bank * Eliminate redundant data entries * Alleviate experimental error due to sample mix-up and genotyping error. * Facilitate clinical and genetic data integration. * Automate data analysis pipelines * Facilitate data mining for genetic as well as environmental factors associated with a disease * Provide an uniformed data acquisition framework, regardless the type of a given disease * Accommodate the heterogeneity of different studies * Manage data flow, storage and access * Ensure patient privacy and data confidentiality/security. The GERON suite consists of several self contained and yet extensible modules. Currently implemented modules are GERON Clinical, Genotyping, and Tracking. More modules are planned to be added into the suite, in order to keep up with the dynamics of the research field. Each module can be used separately or together with others into a seamless pipeline. With each module special attention has been given in order to remain free and open to the academic/government user., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical, genotyping, tracking, genetic, module, pipeline | has parent organization: Intramural Research Program | Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30610 | SCR_008531 | 2026-08-09 09:04:51 | 5 | ||||||
|
FAMOZ Resource Report Resource Website 1+ mentions |
FAMOZ (RRID:SCR_007477) | FAMOZ | software application, software resource | Software application that uses likelihood calculation and simulation to perform parentage studies with codominant, dominant, cytoplasmic markers or combinations of the different types (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl/tk, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154086 | SCR_007477 | FAther/MOther | 2026-08-09 09:04:43 | 6 | ||||||||
|
CLUMP Resource Report Resource Website 100+ mentions |
CLUMP (RRID:SCR_007476) | CLUMP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that uses Monte Carlo method for assessing significance of a case-control association study with multi-allelic marker. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154028 | SCR_007476 | 2026-08-09 09:04:44 | 104 | ||||||||
|
Finite Element Toolkit Resource Report Resource Website 1+ mentions |
Finite Element Toolkit (RRID:SCR_008682) | software toolkit, software resource | The Finite Element ToolKit (FETK) is a collaboratively developed, evolving collection of adaptive finite element method (AFEM) software libraries and tools for solving coupled systems of nonlinear geometric partial differential equations (PDE). The FETK libraries and tools are written in an object-oriented form of ANSI-C and in C , and include a common portability layer (MALOC) for all of FETK, a collection of standard numerical libraries (PUNC), a stand-alone high-quality surface and volume simplex mesh generator (GAMer), a stand-alone networked polygon display tool (SG), a general nonlinear finite element modeling kernel (MC), and a MATLAB toolkit (MCLite) for protyping finite element methods and examining simplex meshes using MATLAB. The entire FETK Suite of tools is highly portable (from iPhone to Blue Gene/L), thanks to use of a small abstraction layer (MALOC) and heavy use of the GNU Autoconf infrastructure. The primary FETK ANSI-C software libraries are: :- MALOC is a Minimal Abstraction Layer for Object-oriented C/C programs. :- PUNC is Portable Understructure for Numerical Computing (requires MALOC). :- GAMer is a Geometry-preserving Adaptive MeshER (requires MALOC). :- SG is a Socket Graphics tool for displaying polygons (requires MALOC). :- MC is a 2D/3D AFEM code for nonlinear geometric PDE (requires MALOC; optionally uses PUNC GAMER SG). Application-specific software designed for use with the FETK software libraries is: :- GPDE is a Geometric Partial Differential Equation solver (requires MALOC PUNC MC; optionally uses GAMER SG). :- APBS is an Adaptive Poisson-Boltzmann Equation Solver (requires MALOC PUNC MC; optionally uses GAMER SG). :- SMOL is a Smoluchowki Equation Solver solver (requires MALOC PUNC MC; optionally uses GAMER SG). MATLAB toolkits designed for use with MC and SG or as standalone packages: :- MCLite is a simple 2D MATLAB version of MC designed for teaching. :- FEtkLAB is a sophisticated 2D MATLAB adaptive PDE solver built on top of MCLite. Related packages developed and maintained by FETK developers (included in PUNC above): :- PMG is a Parallel Algebraic MultiGrid code for general semilinear elliptic equatons. :- CgCode is a package of Conjugate gradient Codes for large sparse linear systems. Sponsors: This resource is developed and supported by the MCP Research Group at the UCSD Center for Computational Mathematics. | element, differential equation, geometric, library, modeling, nonlinear, software, tool, toolkit, volume |
is related to: Adaptive Poisson-Boltzmann Solver has parent organization: University of California at San Diego; California; USA |
nif-0000-33758 | SCR_008682 | FETK | 2026-08-09 09:05:01 | 5 | |||||||||
|
TLINKAGE Resource Report Resource Website |
TLINKAGE (RRID:SCR_008838) | TLINKAGE | software application, software resource | Software programs that are extensions of the LINKAGE programs that allow the disease phenotype to be under the control of disease two loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | nlx_154672 | SCR_008838 | two-locus trait linkage programs | 2026-08-09 09:05:02 | 0 | ||||||||
|
TRAP Resource Report Resource Website 100+ mentions |
TRAP (RRID:SCR_009002) | TRAP | software application, software resource | Software tool for determining a regression model of quantitative or binary trait variation when the number of possible genetic predictors is very large, considering only a moderate number of predictors at one time, using unrelated or family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, any with r installation | is listed by: Genetic Analysis Software | nlx_154010 | SCR_009002 | Tiled Regression Analysis Package | 2026-08-09 09:05:04 | 397 | ||||||||
|
MGA-MAPF2 Resource Report Resource Website |
MGA-MAPF2 (RRID:SCR_008108) | MGA-MAPF2 | software application, software resource | Software application that map QTLs in F-2 intercross in model organisms (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154478 | SCR_008108 | 2026-08-09 09:04:49 | 0 | |||||||||
|
ILR Resource Report Resource Website |
ILR (RRID:SCR_007895) | ILR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_007895 | Imprinting Likelihood Ratio | 2026-08-09 09:04:47 | 0 | ||||||||
|
2SNP Resource Report Resource Website 1+ mentions |
2SNP (RRID:SCR_009038) | 2SNP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. An algorithm resource for scalable phasing method for trios and unrelated individuals. | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18451440 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154003 | https://omictools.com/2snp-tool | http://alla.cs.gsu.edu/~software/2SNP/ | SCR_009038 | 2026-08-09 09:05:06 | 2 | |||||
|
AGEINF Resource Report Resource Website |
AGEINF (RRID:SCR_009039) | AGEINF | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application used to infer the age of a rare, selectively-neutral mutation. | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | Aging | PMID:10978301 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154004 | http://www.math.sfu.ca/~jgraham/Papers/Programs/AgeCode/ | SCR_009039 | 2026-08-09 09:04:56 | 0 | |||||
|
SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software application, software resource | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SIBling Mutation and Error Detection | 2026-08-09 09:04:44 | 1 | |||||||
|
ALBERT Resource Report Resource Website 10+ mentions |
ALBERT (RRID:SCR_009037) | ALBERT | software application, software resource | Software application that estimates genotype relative risks, genotyping error rates and population risk allele frequencies from marker genotype data in case-parent trios. ALBERT uses the distribution of trio marker genotypes to compute maximum likelihood estimates for the parameters. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:albert, nlx_154002 | https://bio.tools/albert | SCR_009037 | A Likelihood Based Estimation of Risk in Trios | 2026-08-09 09:05:04 | 48 | |||||||
|
MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software application, software resource | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | 2026-08-09 09:04:49 | 0 | |||||||||
|
ACT Resource Report Resource Website |
ACT (RRID:SCR_009033) | ACT | software application, software resource | Software application that contains the following modules: ibd, calculates the proportion of gene shared identical by decent for a nuclear family; ibdn, (modified program of ERPA), which implements a method for assessing increased-allele sharing between all pairs of affected relatives within a pedigree; multic, multivariate analysis for complex traits; ml, estimation of variance components using maximum likelihood; ql, estimation of variance components using quasi likelihood; relcov, generates first degree relationship coefficients for extended families; sim2s, the simulation program that was used to test ACT; cage, Cohort Analysis for Genetic Epidemiology; gh: GeneHunter, heavily modified to assist multipoint calculation using multic; TDT: TDT programs written in SAS; gcc and f77 compilers are necessary. Executable programs are included for compatible operating systems, i.e., Solaris2.6. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, c++, unix, solaris 2.4 | is listed by: Genetic Analysis Software | nlx_153997 | http://www.epigenetic.org/Linkage/act.tar.gz | SCR_009033 | Analysis of Complex Traits | 2026-08-09 09:04:55 | 0 | |||||||
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S Resource Report Resource Website |
S (RRID:SCR_007646) | S | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154605 | SCR_007646 | 2026-08-09 09:04:46 | 0 | ||||||||
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LDA Resource Report Resource Website |
LDA (RRID:SCR_007527) | LDA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium. | gene, genetic, genomic, java, ms-windows, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154088 | SCR_007527 | Linkage Disequilibrium Analyzer | 2026-08-09 09:04:45 | 0 |
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