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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Kutcher Adolescent Depression Scale Resource Report Resource Website |
Kutcher Adolescent Depression Scale (RRID:SCR_003687) | KADS | assessment test provider, material resource | A psychological self-rating scale developed by Dalhousie University professor of psychiatry Stan Kutcher, to assess the level of depression in adolescents. While there are some variations, the 11-item version of the KADS is the most commonly used and most thoroughly verified for efficacy in monitoring outcomes in adolescents who are receiving treatment for major depressive disorder. Its items are worded using standard and colloquial terminology, and responses are scored on a simple 4 choice scale. There are ten questions about depression symptom frequency that the patient rates on a straight 4 point scale according to the following choices: hardly ever, much of the time, most of the time, all the time, and one question relating to the severity of suicidal ideation. Scores on the test range from 0 to 33. Unlike some rating scales, there is no threshold for sub-clinical presentation, or ranges for mild, moderate, and severe symptoms. Higher scores simply indicate more severe current depression symptoms. (Adapted from Wikipedia) | adolescent | Depressive Disorder, Major Depressive Disorder | Free | nlx_157842 | SCR_003687 | 2026-08-09 09:03:52 | 0 | ||||||||
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Toolbox at the European Bioinformatics Institute Resource Report Resource Website 50+ mentions |
Toolbox at the European Bioinformatics Institute (RRID:SCR_002872) | software toolkit, software resource | The European Bioinformatics Institute (EBI) toolbox area provides a comprehensive range of tools for the field of bioinformatics. These are subdivided into categories in the left menu for convenience. EBI has developed a large number of very useful bioinformatics tools. A few examples include: - Similarity & Homology - the BLAST or FASTA programs can be used to look for sequence similarity and infer homology. - Protein Functional Analysis - InterProScan can be used to search for motifs in your protein sequence. - Proteomic Services NEW - UniProt DAS server allows researchers to show their research results in the context of UniProtKB/Swiss-Prot annotation. - Sequence Analysis - ClustalW2 a sequence alignment tool. - Structural Analysis - MSDfold can be used to query your protein structure and compare it to those in the Protein Data Bank (PDB). - Web Services - provide programmatic access to the various databases and retrieval/analysis services EBI provides. - Tools Miscellaneous - Expression Profiler a set of tools for clustering, analysis and visualization of gene expression and other genomic data. Sponsors: This resource is sponsored by EBI. | expression, functional, gene, bioinformatics, database, genomic, homology, protein, proteomic, sequence, structural, toolbox | has parent organization: European Bioinformatics Institute | Free | nif-0000-25553 | SCR_002872 | EBI Bioinformatics Tools | 2026-08-09 09:03:39 | 92 | ||||||||
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Childhood Autism Spectrum Test Resource Report Resource Website 10+ mentions |
Childhood Autism Spectrum Test (RRID:SCR_003322) | CAST | assessment test provider, material resource | Assessment test developed by the Autism Research Centre at the University of Cambridge, for assessing the severity of autism spectrum symptoms in children. This assessment is usually used with children aged from 4-11 years of age. | child, young human | Pervasive Development Disorder, Autism | Free, Freely available | nlx_157819 | http://www.moodychild.com/uploads/3/0/8/9/3089108/cast_autism.pdf | SCR_003322 | Childhood Autism Spectrum Test (CAST), Childhood Asperger''s Syndrome Test | 2026-08-09 09:03:43 | 22 | ||||||
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Edinburgh Postnatal Depression Scale Resource Report Resource Website |
Edinburgh Postnatal Depression Scale (RRID:SCR_003685) | EPDS | assessment test provider, material resource | A 10 item assessment scale developed to identify women who have postpartum depression (PPD). Items of the scale correspond to various clinical depression symptoms, such as guilt feeling, sleep disturbance, low energy, anhedonia, and suicidal ideation. Overall assessment is done by total score, which is determined by adding together the scores for each of the 10 items. Higher scores indicate more depressive symptoms. The EPDS may be used within 8 weeks postpartum and it also can be applied for depression screening during pregnancy. (Adapted from Wikipedia) Scoring: * 0-9 Not Likely to Have Depression * 10-30 Likely to Have Depression | postpartum, female, early adult human, adult human, pregnancy | has parent organization: University of California at San Francisco; California; USA | Postpartum depression, Depressive Disorder | Free, Acknowledgement required, Copyrighted | nlx_157840 | SCR_003685 | Edinburgh Postnatal Depression Scale (EPDS) | 2026-08-09 09:03:46 | 0 | ||||||
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Clinical Dementia Rating Resource Report Resource Website 100+ mentions |
Clinical Dementia Rating (RRID:SCR_003678) | CDR | assessment test provider, material resource | A numeric scale used to quantify the severity of symptoms of dementia (i.e. its stage). Using a structured-interview protocol, a qualified health professional assesses a patient's cognitive and functional performance in six areas: memory, orientation, judgment and problem solving, community affairs, home and hobbies, and personal care. Scores in each of these are combined to obtain a composite score ranging from 0 through 3. (Adapted from Wikipedia) | memory, orientation, judgment, problem solving, community, hobby, personal care, late adult human | has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA | Dementia, Alzheimer's disease | Free | nlx_157831 | SCR_003678 | Global CDR Assignment Based On Box Scores, Global Clinical Dementia Rating (CDR) Based on CDR Box Scores | 2026-08-09 09:03:46 | 237 | ||||||
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Four-dimensional Ascidian Body Atlas Resource Report Resource Website 1+ mentions |
Four-dimensional Ascidian Body Atlas (RRID:SCR_001691) | FABA | data or information resource, atlas, d spatial image | Image resource including ascidian's three-dimensional (3D) and cross-sectional images through the developmental time course. These images were reconstructed from more than 3,000 high-resolution real images collected by confocal laser scanning microscopy (CLSM) at newly defined 26 distinct developmental stages (stages 1-26) from fertilized egg to hatching larva, which were grouped into six periods named the zygote, cleavage, gastrula, neurula, tailbud, and larva periods. The data set will be helpful in standardizing developmental stages for morphology comparison as well as for providing guidelines for several functional studies of a body plan in chordate. | gene expression, genome, comparative genomics, human, microarray data, model organism, vertebrate, development, ascidian, embryonic development, embryo, video, developmental stage, 3d, slice, timelapse, egg, larva, time, confocal laser scanning microscopy | Japanese Ministry of Education Culture Sports Science and Technology MEXT ; JST-BIRD ; Japan Society for the Promotion of Science 18770207 |
PMID:17557317 | Free, Freely Available | nif-0000-02529 | http://ciona.lab.nig.ac.jp/ascidian/top.html | SCR_001691 | FABA: Four-dimensional Ascidian Body Atlas | 2026-08-09 09:03:14 | 5 | |||||
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ENTROPY BLOCKER Resource Report Resource Website |
ENTROPY BLOCKER (RRID:SCR_000123) | ENTROPY BLOCKER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software application aiming at identifying haplotype blocks. The likelihood of the data is calculated minus the model complexity. The resulting blocks have very low diversity and the linkage disequilibrium with SNP's outside the blocks is low. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, ms-windows, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154300, nlx_154581, SCR_007247 | SCR_000123 | R/ENTROPY BLOCKER, R/ENTROPY_BLOCKER | 2026-08-09 09:02:54 | 0 | |||||||
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Colin 3T/7T High-resolution Atlas Resource Report Resource Website |
Colin 3T/7T High-resolution Atlas (RRID:SCR_000160) | Colin 3T/7T High-resolution Atlas | data or information resource, atlas | High-field extension of the Colin27 single-subject atlas with additional high-resolution, quantitative, averaged scans at both 3T and 7T. | nifti-1, magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_157729 | SCR_000160 | Colin 3T / 7T High-resolution Atlas | 2026-08-09 09:02:55 | 0 | |||||||
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EPMBA.ORG: Electronic Prenatal Mouse Brain Atlas Resource Report Resource Website 1+ mentions |
EPMBA.ORG: Electronic Prenatal Mouse Brain Atlas (RRID:SCR_001882) | EPMBA | data or information resource, atlas | The Electronic Prenatal Mouse Brain Atlas, EPMBA, at present consists of two sets of annotated images of coronal sections from Gestational Day (GD) 12 heads and GD 16 brains of C57BL/6J mice. Ten micron thick sections were stained with hematoxylin and eosin. Images were prepared at various resolutions for annotations and for high resolution presentation. A subset of sections were annotated and linked to anatomical terms. Additionally, horizontal sections of a GD 12 head were aligned and re-assembled into a 3D volume for digital sectioning in arbitrarily oblique planes. These images were captured using a Nikon E800 stereomicroscope with a 10X objective. The resolution is 1.35 pixels/micrometer. The PC program used to grab the images, Microbrightfield's Neurolucida (version 6), stitched together a mosaic of between 10 and 50 high-res images for each tissue slice, while the user focused the scope for each mosaic tile. Since the nature of optic lenses is to focus on one central point, it was difficult to obtain a uniformly-focused field of vision; as such, small areas of these images are blurred. Images were then transferred to a Macintosh and processed in Adobe Photoshop (version 7). Color levels were adjusted for maximum clarity of the tissue, and areas surrounding the tissue were cleared of artifacts. Each image is approximately 3350 pixels wide by 2650 pixels high. A scale bar with a length of 1350 pixels/mm is visible in the lower right-hand corner of each image. The annotations have been completed for the Atlas of Developing Mouse Brain Gestational (Embryonic) Day 12 (7/5/07) as well as the Atlas of Developing Mouse Brain Embryonic Day 16 (4/26/07). The 3D EPMBA data set has been mounted on a NeuroTerrain Atlas Server (NtAS). (6/27/07). | embryonic, brain, c57bl/6j, coronal, developing, developmental, gestational, head, horizontal sections, image, mouse, prenatal | has parent organization: East Tennessee State University; Tennessee; USA | Human Brain Project ; NIMH 263-MD-414639 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10452 | SCR_001882 | EPMBA.org, Electronic Prenatal Mouse Brain Atlas | 2026-08-09 09:03:18 | 1 | ||||||
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Spinal Research Resource Report Resource Website 1+ mentions |
Spinal Research (RRID:SCR_000701) | ISRT | institution | Spinal Research committed to funding international research into cure for spinal cord paralysis. Charity that funds medical research for treating and curing spinal cord paralysis. Supports basic science, clinical research and funds PhD students. ISRT also hosts Annual Network Meetings. | spinal, research, grant, funding, clinical, trust | grid.468536.a, ISNI: 0000 0000 9820 9830, SCR_002736, nif-0000-00473, nif-0000-24038, Crossref funder ID: 501100000334 | https://ror.org/042szwr56 | SCR_000701 | International Spinal Research Trust | 2026-08-09 09:03:02 | 1 | ||||||||
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Images of the Drosophila Nervous System Resource Report Resource Website |
Images of the Drosophila Nervous System (RRID:SCR_000211) | data or information resource, atlas | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Drosophila neurobiology with 3D images, enhancer traps, Golgi impregnations and protocols. This data contains a schematic view onto the brain of an adult fly is a clickable imagemap. The set of links overlaps with those of the 3D-clickable version, but is not identical. | drosphila, fly, invertebrate | has parent organization: University of Freiburg; Baden-Wurttemberg; Germany | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-12508 | SCR_000211 | IDNS | 2026-08-09 09:02:55 | 0 | ||||||||
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Mindboggle-101 atlases Resource Report Resource Website 10+ mentions |
Mindboggle-101 atlases (RRID:SCR_002439) | Mindboggle-101 | data or information resource, atlas | Complete set of free, publicly accessible, downloadable atlases, templates, and individual manually labeled brain image data, the largest collection of publicly available, manually labeled human brains in the world! http://journal.frontiersin.org/article/10.3389/fnins.2012.00171/full | clinical neuroinformatics, computational neuroscience, mgh/mgz, magnetic resonance, nifti, image collection | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NIMH MH084029 | PMID:23227001 | Free, Freely available | nlx_155814 | http://www.nitrc.org/projects/mindboggle101 | SCR_002439 | Mindboggle-101 manually labeled brains | 2026-08-09 09:03:35 | 14 | ||||
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OpenLink Software Resource Report Resource Website |
OpenLink Software (RRID:SCR_003662) | OpenLink | commercial organization, service resource, software resource | An technology innovator in database and application server software that has been a long time developer of database and semantic repository technologies on both single servers and clusters. This, combined with OpenLink's experience with SQL, gives an all round view of performance across many environments and workload profiles, from transactions to decision support or search. OpenLink also has extensive experience in developing scale-out parallel database technology. The cross-platform product portfolio addresses challenges such as: Universal Data Access, Data Virtualization & Management, Personal & Enterprise Data Spaces, and Implementation & Support. | standards compliant, data access, integration, management, technology, linked data |
is related to: Open PHACTS is parent organization of: DBpedia |
nlx_157816 | SCR_003662 | OpenLink Group Limited | 2026-08-09 09:03:46 | 0 | ||||||||
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UNC Primate Brain Atlas Resource Report Resource Website 1+ mentions |
UNC Primate Brain Atlas (RRID:SCR_002570) | UNC Primate Brain Atlas | data or information resource, atlas | Symmetric atlas of the primate brain created using 18 cases of rhesus macaques aged 16-34 months. It includes the T1-weighted image (with and without skull), and also tissue segmentation probability maps (white matter, gray matter, CSF, rest), subcortical structures segmentation (amygdala, caudate, hippocampus, pallidus, putamen), and a lobar parcellation map. You can find more details about the creation of this atlas in the following paper : M. Styner, R. Knickmeyer, S. Joshi, C. Coe, S. J. Short, and J. Gilmore. Automatic brain segmentation in rhesus monkeys. In Proc SPIE Vol 6512, Medical Imaging, 2007, pp. 65122 L1-8 | atlas data, magnetic resonance, nrrd |
is used by: UNC-Wisconsin Neurodevelopment Rhesus MRI Database is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Creative Commons Attribution-ShareAlike License | nlx_155972 | SCR_002570 | 2026-08-09 09:03:36 | 3 | ||||||||
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UNC Infant 0-1-2 Atlases Resource Report Resource Website 1+ mentions |
UNC Infant 0-1-2 Atlases (RRID:SCR_002569) | UNC Infant 0-1-2 Atlases | data or information resource, atlas | 3 atlases dedicated for neonates, 1-year-olds, and 2-year-olds. Each atlas comprises a set of 3D images made up of the intensity model, tissue probability maps, and anatomical parcellation map. These atlases are constructed with the help of state-of-the-art infant MR segmentation and groupwise registration methods, on a set of longitudinal images acquired from 95 normal infants (56 males and 39 females) at neonate, 1-year-old, and 2-year-old. | analyze, atlas application, linux, macos, microsoft, magnetic resonance, posix/unix-like, infant, pediatric, template, longitudinal, neonate, male, female, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
Normal | NIH ; NIBIB EB006733; NIBIB EB008760; NIBIB EB008374; NIBIB EB009634; NIMH MH088520; NIMH MH070890; NIMH MH064065; NINDS NS055754; NICHD HD053000 |
PMID:21533194 | Free, Available for download, Freely available | nlx_155971 | http://www.nitrc.org/projects/pediatricatlas | SCR_002569 | UNC 0-1-2 Infant Atlases | 2026-08-09 09:03:31 | 2 | |||
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Gnubila Resource Report Resource Website |
Gnubila (RRID:SCR_004109) | Gnubila | commercial organization, service resource, software resource | A commercial software and service company operating in Spain, France and Colombia whose main stakeholder is Indra and its main product is the G platform, on top of which they have developed several vertical applications for various industry sectors like banking, healthcare, government and SMB. Since its constitution, gn??bila has constituted an international reference in the development and deployment of Network Service Infrastructures and Platforms for Businesses, Organizations and Individuals, facilitating communication, collaboration and the coordination of applications, data and information. gn??bila Products: * Cloud Application Platform * Cloud TP Platform * Platform as a Service * Development Platform | cloud computing, gaming platform as a service, application platform as a service, application services, middleware, grid infrastructure | is related to: EMIF | nlx_158585 | SCR_004109 | Gn??bila, Gnubila Technology | 2026-08-09 09:04:01 | 0 | ||||||||
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Stereoscopic Atlas of Intrinsic Brain Networks Resource Report Resource Website 1+ mentions |
Stereoscopic Atlas of Intrinsic Brain Networks (RRID:SCR_002568) | SAIBN | data or information resource, atlas | A 3D stereoscopic (anaglyph method) full brain functional connectivity atlas created using a parcellation atlas published by Craddock et al. (2012). Using 3D Slicer 3.6.3 and the two hundred Region of Interest (ROI) version of the Craddock atlas, 200 grayscale surface models were created using a z-stat threshold > 2.3, and each surface model was processed with a surface decimation algorithm, smoothed with the Taubin algorithm and without surface normals. For improved visualization of the functional connectivity networks and their relative anatomical position, the surface model of five subcortical anatomical structures (corpus callosum, bilateral caudate, pallidum, putamen, thalamus, amygdala and hippocampus) were included in SAIBN. These surfaces were created with 3D Slicer using the segmentation computed with Freesurfer v. 5.1. The viewer should use red-cyan glasses to see the 3D stereoscopic effect using 3D Slicer (version 3.6.3, http://www.slicer.org/pages/Special:SlicerDownloads). | magnetic resonance, corpus callosum, bilateral caudate, pallidum, putamen, thalamus, amygdala, hippocampus |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 3D Slicer |
Free | nlx_155970 | SCR_002568 | Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN) | 2026-08-09 09:03:29 | 1 | |||||||
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Retina Project Resource Report Resource Website 1+ mentions |
Retina Project (RRID:SCR_002884) | Retina Project | data or information resource, spatially referenced dataset, atlas | Collection of images from cell type-specific protein expression in retina using BAC transgenic mice. Images from cell type-specific protein expression in retina using BAC transgenic mice from GENSAT project. | electrophysiology, protein expression, fluorescent, gene, amacrine cell, astrocyte, bipolar cell, blood vessel, brain, cell, ganglion cell layer, central nervous system, circuit, horizontal cell, hybridization, microglia, adult mouse, muller cell, neocortex, neuronal, photoreceptor, protein, recombinase, retina, spinal cord, mutant mouse strain, bac, retinal cell, cell type, night vision, direction, neuronal circuitry, connectivity, image collection |
is used by: NIF Data Federation has parent organization: GENSAT at NCBI - Gene Expression Nervous System Atlas |
Department Of Health And Human Services ; NINDS N01 NS02331 |
PMID:19648912 | Free, Freely available | nif-0000-25587 | SCR_002884 | GENSAT Retina Project, Retina Project from GENSAT, The Retina Project, The Retina Project from GENSAT, GENSAT - Retina Project | 2026-08-09 09:03:36 | 2 | |||||
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eScholarship Resource Report Resource Website 500+ mentions |
eScholarship (RRID:SCR_002624) | eScholarship | data or information resource, service resource, bibliography | Provides comprehensive publication services for Univeristy of California affiliated departments, research units, publishing programs, and individual scholars who seek to publish original, open access journals, books, conference proceedings, and other scholarship. Content is delivered via research platform and is available to scholars worldwide. | California Digital Library, publication, scholarly communication, publish, book, journal, working paper, conference, scholarship, publishing service, |
is listed by: FORCE11 is listed by: DataCite has parent organization: California Digital Library has parent organization: University of California; California; USA |
Free, Freely available | nlx_156042 | https://api.datacite.org/dois?prefix=10.34940 | SCR_002624 | CDL eScholarship | 2026-08-09 09:03:30 | 531 | ||||||
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Zebrafinch Brain Architecture Project Resource Report Resource Website 1+ mentions |
Zebrafinch Brain Architecture Project (RRID:SCR_004277) | Zebrafinch Brain Architecture Project | data or information resource, atlas | Atlas of high resolution Nissl stained digital images of the brain of the zebra finch, the mainstay of songbird research. The cytoarchitectural high resolution photographs and atlas presented here aim at facilitating electrode placement, connectional studies, and cytoarchitectonic analysis. This initial atlas is not in stereotaxic coordinate space. It is intended to complement the stereotaxic atlases of Akutegawa and Konishi, and that of Nixdorf and Bischof. (Akutagawa E. and Konishi M., stereotaxic atalas of the brain of zebra finch, unpublished. and Nixdorf-Bergweiler B. E. and Bischof H. J., A Stereotaxic Atlas of the Brain Of the Zebra Finch, Taeniopygia Guttata, http://www.ncbi.nlm.nih.gov.) The zebra finch has proven to be the most widely used model organism for the study of the neurological and behavioral development of birdsong. A unique strength of this research area is its integrative nature, encompassing field studies and ethologically grounded behavioral biology, as well as neurophysiological and molecular levels of analysis. The availability of dimensionally accurate and detailed atlases and photographs of the brain of male and female animals, as well as of the brain during development, can be expected to play an important role in this research program. Traditionally, atlases for the zebra finch brain have only been available in printed format, with the limitation of low image resolution of the cell stained sections. The advantages of a digital atlas over a traditional paper-based atlas are three-fold. * The digital atlas can be viewed at multiple resolutions. At low magnification, it provides an overview of brain sections and regions, while at higher magnification, it shows exquisite details of the cytoarchitectural structure. * It allows digital re-slicing of the brain. The original photographs of brain were taken in certain selected planes of section. However, the brains are seldom sliced in exactly the same plane in real experiments. Re-slicing provides a useful atlas in user-chosen planes, which are otherwise unavailable in the paper-based version. * It can be made available on the internet. High resolution histological datasets can be independently evaluated in light of new experimental anatomical, physiological and molecular studies. | nissl stain, sagittal, horizontal plane, transverse plane, myelin stain, brain | has parent organization: Brain Architecture Project | W. M. Keck Foundation ; Crick-Clay Professorship ; NINDS NS50436; NIGMS R24 GM092842 |
nlx_143663 | SCR_004277 | 2026-08-09 09:03:53 | 5 |
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