Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Datasets2Tools Resource Report Resource Website 1+ mentions |
Datasets2Tools (RRID:SCR_016174) | data or information resource, database | Database for the discovery and evaluation of biomedical digital objects. It includes a wide variety of enrichment analyses, gene interaction networks, interactive data visualizations, datasets, and computational tools. | biomedical, digital, bioinformatics, dataset, rna seq, computation, microarray, proteomic, bio.tools |
is listed by: bio.tools is listed by: Debian |
Public, Freely available | biotools:datasets2tools | https://bio.tools/datasets2tools | SCR_016174 | 2026-08-10 09:35:37 | 1 | ||||||||
|
Biospecimen Repository Access and Data Sharing Resource Report Resource Website 1+ mentions |
Biospecimen Repository Access and Data Sharing (RRID:SCR_017383) | BRADS | data or information resource, database | Access to data from the Division of Intramural Population Health Research (DIPHR) of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) from completed studies, including biospecimens and ancillary data. | child, health, human, development, dataset | NICHD | Restricted | https://brads.nichd.nih.gov/AccessRequest/AccessRequest/ | SCR_017383 | , BRADS, Biospecimen Repository Access and Data Sharing | 2026-08-10 09:36:03 | 1 | |||||||
|
cwltool Resource Report Resource Website 10+ mentions |
cwltool (RRID:SCR_015528) | source code, software toolkit, software resource | Reference implementation of the Common Workflow Language standards. It provides complete features and tools and comprehensive validation of CWL. The reference implementation consists of two packages. The cwltool package is the primary Python module containing the reference implementation in the cwltool module and console executable by the same name. The cwlref-runner package is optional and provides an additional entry point under the alias cwl-runner, which is the implementation-agnostic name for the default CWL interpreter installed on a host. | language, reference implementation, python |
uses: Python Programming Language is listed by: Debian is listed by: OMICtools |
DOI:10.6084/m9.figshare.3115156.v2 | Available for download | OMICS_28977 | https://sources.debian.org/src/cwltool/ | SCR_015528 | CWLtool, Common Workflow Language Tool | 2026-08-10 09:35:22 | 25 | ||||||
|
Soma-Segmentation Resource Report Resource Website 1+ mentions |
Soma-Segmentation (RRID:SCR_015649) | algorithm resource, source code, software resource | Source code for a soma segmentation method suitable for datasets with touching soma distributions. The method contains three main parts: soma detection based on DT and local maximum searching and refining; an improved Rayburst sampling algorithm for isolated and touching soma surface detection; and ellipsoid fitting to generate the segmentation results. | soma, segmentation method, touching soma distribution, rayburst sampling algorithm, soma detection, matlab | uses: MATLAB | Free, Available for download | SCR_015649 | 2026-08-10 09:35:32 | 1 | ||||||||||
|
Reefgenomics Resource Report Resource Website 10+ mentions |
Reefgenomics (RRID:SCR_015009) | data or information resource, database | Database for marine genomics data. Users can access genomics datasets from various organisms as well as carry out BLAST and submit genomics information of their own. Data sets include coral, aiptasia, sponges, and sybiodinium. | marine genomics, genomics database, blast | has parent organization: King Abdullah University of Science and Technology; Makkah Province; Saudi Arabia | DOI:10.1093/database/baw152 | Available to the research community, The community can contribute to this resource | SCR_015009 | reefgenomics.org | 2026-08-10 09:35:13 | 43 | ||||||||
|
Database of Open Chromatin Regions Resource Report Resource Website 1+ mentions |
Database of Open Chromatin Regions (RRID:SCR_016614) | data or information resource, database | Collection of open chromatin regions from sequencing data. Metadata as entire curated DNase-I hypersensitive sites (DHS) on the whole genome datasets and data specific to each chromosome. | collection, open, chromatin, region, sequencing, data, metadata, dataset | Free, Available for download, Freely available | SCR_016614 | 2026-08-10 09:35:45 | 3 | |||||||||||
|
The 10000 Immunomes Resource Report Resource Website 1+ mentions |
The 10000 Immunomes (RRID:SCR_016624) | 10KIP | data or information resource, database | Collection of reference datasets for human immunology, derived from control subjects in the NIAID ImmPort database . Available data include flow cytometry, CyTOF, multiplex ELISA, gene expression, HAI titers, clinical lab tests, HLA type, and others. | collection, reference, dataset, human, immunology, control, subject, NIAID, ImmPort, database |
is related to: The Immunology Database and Analysis Portal (ImmPort) is related to: NIAID |
NIAID HHSN272201200028C | PMID:30304689 | Public, Free, Available for download, Freely available | SCR_016624 | 10K Immunomes Project, 000 Immunomes Project, 000 Immunomes, 10 | 2026-08-10 09:35:41 | 1 | ||||||
|
PlantGSEA Resource Report Resource Website 10+ mentions |
PlantGSEA (RRID:SCR_016866) | PlantGSEA | production service resource, data analysis service, analysis service resource, service resource | Websever for gene set enrichment analysis of plants. Used for interpreting biological meaning of a list of genes by computing the overlaps with various previously defined gene sets. | gene, set, enrichement, analysis, plant | Ministry of Science and Technology of China ; Ministry of Education of China |
DOI:10.1093/nar/gkt281 | SCR_016866 | The Plant GeneSet Enrichment Analysis Toolkit, Plant GeneSet Enrichment Analysis, Gene Set Enrichment Analysis (GSEA) | 2026-08-10 09:35:44 | 18 | ||||||||
|
Mamit tRNA Resource Report Resource Website 1+ mentions |
Mamit tRNA (RRID:SCR_015493) | data or information resource, database | Compilation of mammalian mitochondrial tRNA genes. Sequences are classified into families according to the amino acid specificity of the different tRNAs as defined by the anticodon triplets. Each sequence is displayed linearly with color codes indicating secondary structural domains. | mammal mitochondria dna, mammal mitochondria gene, mammal mitochondria trna | PMID:11073213 | SCR_015493 | Mamit-tRNA | 2026-08-10 09:35:22 | 2 | ||||||||||
|
PostgreSQL Resource Report Resource Website 100+ mentions |
PostgreSQL (RRID:SCR_021067) | data or information resource, database | Open source object relational database system that uses and extends SQL language combined with many features that safely store and scale the most complicated data workloads. PostgreSQL runs on all major operating systems. | Object relational database system, SQL language, data storage, data, database system |
uses: pgAdmin is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Available for download, Freely available | SCR_021067 | Postgres | 2026-08-10 09:36:43 | 166 | |||||||||
|
CaspBase Resource Report Resource Website 1+ mentions |
CaspBase (RRID:SCR_018975) | data or information resource, database | Database for evolutionary biochemical studies of caspase functional divergence and ancestral sequence inference. Tool to rapidly disseminate organized caspase sequence data. Includes all animal species with currently available annotated genomes in NCBI genome database. Manually curated and not curated sequences are available to download. | Caspase sequences, curated data, caspase, caspase functional divergence, ancestral sequence inference, data analysis, dataset |
is related to: NCBI Genome is related to: NCBI |
PMID:30076665 | Free, Available for download, Freely available | SCR_018975 | Caspase Sequence Database | 2026-08-10 09:36:29 | 2 | ||||||||
|
Genes, Genome Features and Maps Resource Report Resource Website 1+ mentions |
Genes, Genome Features and Maps (RRID:SCR_017524) | data or information resource, database | Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models. | Data, mouse, gene, DNA, segment, cytogenetic, marker, MGI, genome, feature, sequenced, genomic, map, expression, disease, model | Free, Freely available | SCR_017524 | 2026-08-10 09:36:06 | 6 | |||||||||||
|
SIFT 4G Resource Report Resource Website 1+ mentions |
SIFT 4G (RRID:SCR_021850) | production service resource, data analysis service, analysis service resource, service resource | Software tool to predict whether amino acid substitution affects protein function. Faster version of SIFT that enables to scale up and provide SIFT predictions for more organisms. | sequence homology, amino acids physical properties, amino acid substitution, protein function | is related to: SIFT | Free, Available for download, Freely available | https://github.com/rvaser/sift4g | SCR_021850 | Sorting Intolerant From Tolerant For Genomes, SIFT4G | 2026-08-10 09:37:00 | 4 | ||||||||
|
Phenotypes and Mutant Alleles Resource Report Resource Website 10+ mentions |
Phenotypes and Mutant Alleles (RRID:SCR_017523) | data or information resource, database, service resource | Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes. | MGI, phenotype, human, disease, analysis, model, genetically, engineered, mutation, strain, specific, phenotype, data | has parent organization: Mouse Genome Informatics (MGI) | Free, Freely available | SCR_017523 | Phenotypes, Alleles & Disease Models | 2026-08-10 09:35:57 | 13 | |||||||||
|
EBSCO Dentistry and Oral Sciences Source Resource Report Resource Website 1+ mentions |
EBSCO Dentistry and Oral Sciences Source (RRID:SCR_022705) | data or information resource, database | Full text research database for dental practitioners and researchers. Offers top dental and oral sciences journals commonly purchased by dental schools and related institutions. | Dentistry journal, oral health | Free, Freely available | https://www.ebsco.com/products/research-databases/dentistry-oral-sciences-source | SCR_022705 | Dentistry and Oral Sciences Source | 2026-08-10 09:37:10 | 3 | |||||||||
|
protein hydrophilicity analysis tool Resource Report Resource Website 1+ mentions |
protein hydrophilicity analysis tool (RRID:SCR_023015) | production service resource, analysis service resource, service resource | Web protein hydrophilicity analysis tool. | protein hydrophilicity analysis | Free, Freely available | SCR_023015 | 2026-08-10 09:37:15 | 3 | |||||||||||
|
Intego Resource Report Resource Website 1+ mentions |
Intego (RRID:SCR_022563) | data or information resource, database | Computerized morbidity registration network in Belgium based on general practice data.Contains demographic, clinical, biomedical, and prescription data, registered with computer generated keywords in electronic health record. | Computerized morbidity registration network, general practice data, Belgium, electronic health record | PMID:24906941 | Free, Freely available | SCR_022563 | 2026-08-10 09:37:08 | 1 | ||||||||||
|
TransmiR Resource Report Resource Website 100+ mentions |
TransmiR (RRID:SCR_017499) | data or information resource, database | Collection of transcription factor microRNA regulations. TransmiR v2.0 manually curated TF-miRNA regulations from publications during 2013-2017 and included ChIP-seq-derived TF-miRNA regulation data. | Transcription, factor, miRNA, regulation, manually, curated, TF-miRNA, ChIPseq, derived, TF-miRNA, data, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Peking University; Beijing; China |
Restricted | biotools:transmir | https://bio.tools/transmir/ | SCR_017499 | TransmiR v2.0 | 2026-08-10 09:35:57 | 123 | |||||||
|
Scopus Resource Report Resource Website 500+ mentions |
Scopus (RRID:SCR_022559) | data or information resource, database | Abstract and indexing database with full text links that is produced by Elsevier Co. Combines expertly curated abstract and citation database with enriched data and linked scholarly literature across wide variety of disciplines. | Elsevier Co, abstract and citation database, data, scholarly literature, abstract and indexing database, full text links | is listed by: SoftCite | PMID:16522216 | SCR_022559 | 2026-08-10 09:37:08 | 788 | ||||||||||
|
C-GORD Resource Report Resource Website 1+ mentions |
C-GORD (RRID:SCR_021866) | data or information resource, database | Center maintains database containing all phenotypical data collected by Research Projects and Ancillary collaborators, as well as RNAseq and genotype data.Provides access to data generated by NIDA center for genetic studies of drug abuse in outbred rats and additional research projects that use N/NIH heterogeneous stock (HS) outbred rats and Center’s core services that support genotyping and analysis.Alignes data generated in HS rats with FAIR (Findable, Accessible, Interoperative, Reusable) data management principles.Provides structured access to data associated with research papers produced by research projects that use HS rats. | genetic studies, drug abuse, outbred rats, genotyping and analysis, HS rats, FAIR data, drug addiction behaviors data, multiple behavior phenotypes |
is related to: RatGTEx Portal has parent organization: University of California at San Diego; California; USA |
Restricted | http://cgord.org, https://github.com/Palmer-Lab-UCSD | SCR_021866 | CGORD, Center for GWAS in Outbred Rats Database | 2026-08-10 09:37:00 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
