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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Australian Data Archive Resource Report Resource Website 1+ mentions |
Australian Data Archive (RRID:SCR_014706) | service resource, storage service resource, data repository | A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use. | data archive, data catalogue, australia, digital research data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Available to the research community | DOI:10.26193, DOI:10.17616/R3DS3K, DOI:10.25504/FAIRsharing.sN8d9i | https://doi.org/10.26193, https://dx.doi.org/10.26193, http://doi.org/10.17616/R3DS3K, https://fairsharing.org/10.25504/FAIRsharing.sN8d9i | SCR_014706 | 2026-08-10 09:35:10 | 9 | ||||||||
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Relibase Resource Report Resource Website 1+ mentions |
Relibase (RRID:SCR_014888) | data or information resource, web application, database, software resource | Web-based system for searching and analysing protein-ligand structures in the Protein Data Bank (PDB). The database provides an easily accessible web-browser interface and clear 3D structure visualisation that allows for 3D protein-ligand interaction searches, automatic superimposition and detailed analysis of related binding sites to identify protein flexibility, ligand overlap, and conserved water positions. | structural biology, protein, ligand, protein data bank, pdb, visualization, analysis, molecular recognition | Available to the academic community | SCR_014888 | 2026-08-10 09:35:12 | 5 | |||||||||||
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GVKBIO databases Resource Report Resource Website 1+ mentions |
GVKBIO databases (RRID:SCR_014893) | data or information resource, web application, database, software resource | Collection of databases with standalone databases, which gives opportunity for customers to integrate the data into their internal tools and databases, as well as online databases, that are available to the customers from a dedicated website where an individual can query and export the data in the selected format. The standalone database topics include medicinal chemistry, drugs and target class based compounds. The online databases are comprised of three major compilations: GVK BIO Online Structure Activity Relation Database (GOSTAR), GVK BIO Biomarker Database (GOBIOM), and Clinical Trial Outcome Database (CTOD). | research, database, online, standalone, medicinal chemistry, drug, clinical, toxicity, biomarker, contract research organization, cro | Commercial | SCR_014893 | GVK Biosciences, GVK BIO | 2026-08-10 09:35:12 | 3 | ||||||||||
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iResearch Library Resource Report Resource Website 1+ mentions |
iResearch Library (RRID:SCR_014890) | data or information resource, web application, database, software resource | Database of commercially accessible screening compounds from international chemistry suppliers. iResearchLibrary is updated on a weeky basis and offers support for creating internal screening libraries containing commercially accessible compounds, developing exploratory and targeted libraries, selecting commercially accessible compounds for SAR, lead expansion, and hit follow-up projects, and using structures for pharmacophore searching, virtual screening and other computational work. | research, database, library, chemistry, suppliers, pharmacology, screening, computation | Commercial, Freely available to National Institutes of Health (NIH) researchers | SCR_014890 | 2026-08-10 09:35:09 | 2 | |||||||||||
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World Drug Index Resource Report Resource Website |
World Drug Index (RRID:SCR_014891) | data or information resource, web application, database, software resource | Database of marketed and developed drugs indexed with internationally-recognized drug names, synonyms, trade names, trivial names and trial preparation codes in one source, plus compound structures and activity data. Each record has chemical structure and is classified by drug activity, mechanism of action, treatment, manufacturer, synonyms, medical nformation and literature references. | drug, index, chemical, trade name, generic name, company name, synonyms, compounds, treatment, manufacturer | Commercial | SCR_014891 | 2026-08-10 09:35:14 | 0 | |||||||||||
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Open National Cancer Institute Database Resource Report Resource Website 10+ mentions |
Open National Cancer Institute Database (RRID:SCR_014886) | data or information resource, web application, database, software resource | Public web server that provides structures, data, tools, programs and other useful information to the public for computer-aided drug design. It is the official database of the Computer-Aided Drug Design (CADD) Group. | drug design, drug testing, computer-aided, web, database, server, computer-aided drug design, cadd | Public, Available to the research communtiy | SCR_014886 | 2026-08-10 09:35:14 | 10 | |||||||||||
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Drug Information Portal Resource Report Resource Website |
Drug Information Portal (RRID:SCR_002818) | Drug Information Portal | data or information resource, topical portal, portal, database | The NLM Drug Information Portal gives users a gateway to selected drug information from the U.S. National Library of Medicine and other key U.S. Government agencies. At the top of the page are links to individual resources with potential drug information, including summaries tailored to various audiences. Resources include the NLM search systems useful in searching for a drug, NLM research resources, resources organized by audience and class, and other NIH and government resources such as FDA and CDC. The search box in the middle of the page lets you search many of these resources simultaneously. More than 34,000 drugs can be searched using this facility. The portal covers drugs from the time they are entered into clinical trials (Clinicaltrials.gov) through their entry in the U.S. market place (Drugs@FDA). Many drugs in other countries are covered, but not as thoroughly as U.S. drugs. The PubMed link provides medical literature describing research, and TOXLINE provides toxicology literature. Resources such as MedlinePlus provide easy to read summaries of the uses and efficacy of a drug. You may search by a drug's trade name or generic name. For example, the trade name Advil and the generic name ibuprofen will retrieve the same drug record. As you type in a name, suggestions are given beneath the search box. A spell checker gives suggestions if the name is not found. You can find embedded portions of names by using an asterisk at the beginning and/or end of a search term. You can also search by the general Category of usage of a drug by checking that radio button. Suggestions are given as you type here too. Once a drug is found, a summary of the drug's type and usage is given, as well as links leading to further information at one of the portal's resources. Outside links open in a new window. Within a given drug record, you may click on the drug category and retrieve drugs with the same or similar uses. * View drug category descriptions. * View top By Name searches (previous seven days). * View top By Category searches (previous seven days). * View top dispensed prescriptions in the US Market, 2010. * View common drug name list. * View category name list. * View list of resources searched. JavaScript must be enabled in your browser for the NLM Drug Information Portal to work properly. | drug, catalog, medicine, prescription | has parent organization: National Library of Medicine | NLM | PMID:19384716 | Free, Freely available | nif-0000-24913 | SCR_002818 | Drug Information Portal - Quick Access to Quality Drug Information, NLM Drug Information Portal | 2026-08-10 09:31:50 | 0 | |||||
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ANDES Resource Report Resource Website 10+ mentions |
ANDES (RRID:SCR_002791) | data analysis software, software application, software toolkit, software resource, data processing software | Software library and a suite of applications, written in Perl and R, for deep sequencing statistical analyses. | deep sequencing, biomarker detection, statistical analysis, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
PMID:20633290 | Free, Freely available, Available for download | biotools:andes, OMICS_01119 | https://bio.tools/andes | SCR_002791 | Statistical tools for the Analyses of Deep Sequencing (ANDES), Statistical tools for the Analyses of Deep Sequencing, Statistical tools for the ANalyses of Deep Sequencing | 2026-08-10 09:31:49 | 26 | ||||||
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International Spinal Cord Society Resource Report Resource Website 10+ mentions |
International Spinal Cord Society (RRID:SCR_002908) | data or information resource, topical portal, portal | ISCoS promotes the highest standard of care in the practice of spinal cord injury for men, women and children throughout the world. Through its medical and multi disciplinary team of Professionals ISCoS endeavours to foster education, research and clinical excellence. ISCoS has a membership of over 1,000 Clinicians and Scientists from 87 countries. They regularly update their knowledge at the Annual Scientific Meeting held in a different country each year. Goals of ISCoS: :- Serve as an international impartial, non-political and non-profit making association whose purpose is to study all problems relating to traumatic and non-traumatic lesions of the spinal cord. This includes causes, prevention, basic and clinical research, medical and surgical management, clinical practice, education, rehabilitation and social reintegration. This society will function in close collaboration with other national and international bodies, thereby encouraging the most efficient use of available resources. :- Provide a scientific exchange among its members and others by collecting and disseminating information through publications, correspondence, exhibits, regional and international seminars, symposia, conferences and otherwise. :- Advise, encourage, promote and when requested, assist in efforts to co-ordinate or guide research, development and evaluation activities related to spinal cord lesions throughout the world. :- Advise, encourage, guide and support the efforts of those responsible for the care of patients involved and when requested, correlate these activities throughout the world. :- Advise, encourage, guide and support the efforts of those responsible for the education and training of medical professionals and professionals allied to medicine and when requested, correlate these activities throughout the world. | education, clinical, medical, rehabitation, research, society, spinal cord, surgical | nif-0000-30009 | SCR_002908 | ISCoS | 2026-08-10 09:31:52 | 20 | ||||||||||
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ARC Centre of Excellence in Vision Science Resource Report Resource Website |
ARC Centre of Excellence in Vision Science (RRID:SCR_003196) | ACEVS | data or information resource, topical portal, portal | Centre of Excellence in Vision Science that brings together major vision research programs at the The Australian National University with cognate programs at the Universities of Queensland, Sydney and Western Australia. The research is focused on unravelling the cellular basis of visual sensing and processing; on revealing the algorithms that underlie the visual control of behavior and perception; and on discovering the cellular mechanisms that make the eye and retina stable, and whose breakdown causes blindness. | vision, eye, retina, blindness, perception, behavior, sense | has parent organization: Australian National University; Acton; Australia | Australian Research Council | Free, Freely available | nlx_157285 | https://www.nature.com/nature-index/institution-outputs/australia/arc-centre-of-excellence-in-vision-science-acevs/55d3f273140ba0b6018b456f | SCR_003196 | ARC Center of Excellence in Vision Science, Australian Research Council Centre of Excellence in Vision Science | 2026-08-10 09:31:56 | 0 | |||||
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Cancer Genome Anatomy Project Resource Report Resource Website 100+ mentions |
Cancer Genome Anatomy Project (RRID:SCR_003072) | CGAP | data or information resource, topical portal, portal | Project to determine the gene expression profiles of normal, precancer, and cancer cells, whose generated resources are available to the cancer community. Interconnected modules provide access to all CGAP data, bioinformatic analysis tools, and biological resources allowing the user to find in silico answers to biological questions in a fraction of the time it once took in the laboratory. * Genes * Tissues * Pathways * RNAi * Chromosomes * SAGE Genie * Tools | gene, gene expression, normal cell, precancer cell, cancer cell, cell, genome, anatomy, gene expression profile, tissue, pathway, rnai, chromosome, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: National Cancer Institute is parent organization of: CGAP GO Browser |
Cancer, Normal, Precancer | NCI | Free, download Freely available | biotools:cgap, nif-0000-30468 | https://mitelmandatabase.isb-cgc.org/mb_search | SCR_003072 | Cancer Genome Anatomy Project (CGAP) | 2026-08-10 09:31:55 | 108 | ||||
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PathGuide: the pathway resource list Resource Report Resource Website 10+ mentions |
PathGuide: the pathway resource list (RRID:SCR_003248) | Pathguide | data or information resource, database, catalog | Catalog containing information about 547 biological pathway related resources and molecular interaction related resources. Databases that are free and those supporting BioPAX, CellML, PSI-MI or SBML standards are respectively indicated. | gene interaction network, metabolic pathway, signaling pathway, pathway diagram, protein-compound interaction, protein-protein interaction, protein sequence focused, transcription factor, gene regulatory network, transcription factor target, genetic interaction, pathway, molecular interaction, FASEB list |
is listed by: OMICtools is related to: PSI-MI is related to: bioDBcore is related to: Biological Pathways Exchange is related to: CellML is related to: SBML is related to: Biological Pathways Exchange |
PMID:16381921 | Free, Freely available | SciRes_000148, OMICS_01701, nif-0000-00640 | SCR_003248 | 2026-08-10 09:31:59 | 47 | |||||||
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Open Science Framework Resource Report Resource Website 500+ mentions |
Open Science Framework (RRID:SCR_003238) | OSF | service resource, storage service resource, data repository | Platform to support research and enable collaboration. Used to discover projects, data, materials, and collaborators helpful to your own research. | workflow, cloud, data management, provenance, network, collaboration, data sharing, interdisciplinary research, FASEB list |
is used by: NIH Heal Project is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: FAIRsharing has parent organization: Center for Open Science |
Free, Freely available | DOI:10.25504/FAIRsharing.g4z879, DOI:10.17605, nlx_157292, DOI:10.17616/R3N03T, r3d100011268, SCR_017419 | http://openscienceframework.org, https://doi.org/10.17616/R3N03T, https://doi.org/10.17616/r3n03t, https://doi.org/10.17605/, https://dx.doi.org/10.17605/, https://fairsharing.org/10.25504/FAIRsharing.g4z879, https://doi.org/10.17616/R35G9K | SCR_003238 | 2026-08-10 09:31:58 | 938 | |||||||
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MorphoBank Resource Report Resource Website 100+ mentions |
MorphoBank (RRID:SCR_003213) | MorphoBank | data or information resource, database | Web application providing online database and workspace for evolutionary research, specifically systematics (the science of determining the evolutionary relationships among species). It enables researchers to upload images and affiliate data with those images (labels, species names, etc.) and allows researchers to upload morphological data and affiliate it with phylogenetic matrices. MorphoBank is project-based, meaning a team of researchers can create a project and share the images and associated data exclusively with each other. When a paper associated with the project is published, the research team can make their data permanently available for view on MorphoBank where it is now archived. | phenotype, web service, phylogenetics, cladistics, histology, neurology, taxonomy, image, phylogeny, cladistic analysis, morphology, anatomy, evolution, homology, systems biology, FASEB list |
is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: Stony Brook University; New York; USA |
NSF ; NOAA NA04OAR4700191 |
PMID:34875801 | Free, Freely available | DOI:10.25504/FAIRsharing.1y63n8, DOI:10.17616/R3PC7F, DOI:10.7934, nlx_156938, r3d100010786 | https://doi.org/10.17616/R3PC7F, https://doi.org/10.17616/r3pc7f, https://doi.org/10.7934/, https://dx.doi.org/10.7934/, https://fairsharing.org/10.25504/FAIRsharing.1y63n8, https://doi.org/10.17616/R3MK88 | SCR_003213 | 2026-08-10 09:31:57 | 119 | |||||
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Syracuse University; Institute for Sensory Research Resource Report Resource Website |
Syracuse University; Institute for Sensory Research (RRID:SCR_003377) | ISR | data or information resource, topical portal, portal | The Institute for Sensory Research (ISR) defines itself as a world class research center dedicated to the discovery and application of knowledge of the sensory systems. Integration of engineering, life, and physical sciences, combining rigorous experimental methodology with mathematical analysis is stressed. Our multidisciplinary approach to bioengineering, sensory neuroscience, graduate, and undergraduate education, makes ISR a unique academic research center. At ISR, we study sensory systems, our gateways to the world. Our ears, eyes, skin, and mouth are channels through which we experience sound, light, texture, etc. These are functions that we usually take for granted until problems arise. Engineers, scientists, and students at ISR investigate both the basic sensory principles used by the brain, and also how the sensory systems can be best utilized, modified, and repaired if necessary to better communicate with our surroundings and with one another. In addition to basic research in hearing, touch, vision, and oro-facial biomechanics, recent projects include the design and testing of sensory-aid devices such as cochlear implants, hearing aids, ear protectors, and tactile aids for the visually and hearing impaired. Additional projects involve visual-depth perception, chewing and swallowing, oto-acoustic emissions, and personal care products such as oral rinses and skin lotions. Research * Auditory * Somatosensory * Vision | cochlea model, auditory, somatosensory, vision, eye, ear, skin, mouth, sensory system | Free, Freely available | nif-0000-01969 | https://library.syracuse.edu/digital/guides_sua/html/sua_sensory_research.htm | SCR_003377 | 2026-08-10 09:31:59 | 0 | ||||||||
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Wellcome Trust Centre for Human Genetics Resource Report Resource Website 10+ mentions |
Wellcome Trust Centre for Human Genetics (RRID:SCR_003307) | WTCHG | data or information resource, topical portal, portal | An international leader in genetics, genomics and structural biology, and research institute of the Nuffield Department of Medicine at the University of Oxford, whose objective is to extend our understanding on how genetic inheritance makes us who we are in order to gain a clearer insight into mechanisms of health and disease. Looking across all three billion letters of the human genetic code, they aim to pinpoint variant spellings and discover how they increase or decrease an individual's risk of falling ill. They collaborate with research teams across the world on a number of large-scale studies in these areas. | genetics, genomics, structural biology |
has parent organization: University of Oxford; Oxford; United Kingdom is parent organization of: Happy is parent organization of: Wellcome-CTC Mouse Strain SNP Genotype Set is parent organization of: CHAoS is parent organization of: Platypus is parent organization of: Stampy is parent organization of: GWAMA is parent organization of: cortex var |
University of Oxford; Oxford; United Kingdom ; Wellcome Trust ; other sponsors |
Free, Freely available | nif-0000-31897 | SCR_003307 | 2026-08-10 09:31:58 | 49 | |||||||
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nSolver Analysis Software Resource Report Resource Website 100+ mentions |
nSolver Analysis Software (RRID:SCR_003420) | nSolver Analysis Software | software application, data processing software, software resource | Data analysis software program that offers nCounter users the ability to QC, normalize, and analyze data without having to purchase additional software packages. | normalization, analysis, ncounter, os x, windows, quality control | is listed by: OMICtools | Restricted | OMICS_02309 | https://nanostring.app.box.com/v/nSolver-AdvancedAnalysis, https://nanostring.com/products/ncounter-analysis-system/ncounter-analysis-solutions/nsolver-data-analysis-support/ | SCR_003420 | 2026-08-10 09:32:00 | 405 | |||||||
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nematodes.org Resource Report Resource Website 10+ mentions |
nematodes.org (RRID:SCR_003267) | nematodes.org | data or information resource, topical portal, portal, organism-related portal | Nematode & Neglected Genomics (at) The Blaxter Lab is a nematode related portal including databases and services. Resources include genomic and transcriptomic databases for nematodes and other metazoan phyla and freely downloadable software tools for expressed sequence tag analysis, DNA barcode analysis and phylogenomics. Major categories include: * GenePool * 959 Nematode Genomes * Teaching * Research Projects * Bioinformatics Software Tools * Lab Personnel * Lab Wiki * Genomics Databases * NEMBASE4 * Tardigrada: Hypsibius dujardini * Earthworm: Lumbricus rubellus * MolluscDB * ArthropodDB * other Neglected Genomes | nematode, genomics, genome, gene, database, transcriptome, analysis tool, bioinformatics, genomics databases, software, expressed sequence tag, analysis, dna barcode, phylogenomics, FASEB list |
has parent organization: University of Edinburgh; Scotland; United Kingdom is parent organization of: 959 Nematode Genomes is parent organization of: MolluscDB PartiGene database is parent organization of: NEMBASE is parent organization of: PartiGene ARTHROPODA Database is parent organization of: Bombus terrestris PartiGene Database |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03187 | SCR_003267 | Nematode & Neglected Genomics (at) The Blaxter Lab, Blaxter Lab, Nematode and Neglected Genomics, nematodes.org Nematode & Neglected Genomics (at) The Blaxter Lab, Nematode & Neglected Genomics | 2026-08-10 09:31:58 | 31 | |||||||
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Genedata Expressionist Resource Report Resource Website 10+ mentions |
Genedata Expressionist (RRID:SCR_003298) | data analysis software, software application, data management software, software resource, data processing software | Software that provides data processing, analysis, management, and reporting of metabolomics, proteomics and biotherapeutics characterization studies based on mass spectrometry. It can process raw data from various MS instruments, serve MS processing, analysis and reporting needs, and ensure reproducibility and traceability of results. | mass spectrometry data processing, mass spectrometry data analysis, mass spectrometry data management, omics software | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00761 | SCR_003298 | Genedata Expressionist for Genomic Profiling | 2026-08-10 09:31:58 | 10 | ||||||||
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Yale Rudd Center for Food Policy and Obesity Resource Report Resource Website 1+ mentions |
Yale Rudd Center for Food Policy and Obesity (RRID:SCR_003283) | Rudd Center | data or information resource, topical portal, portal | A non-profit research and public policy organization devoted to improving the worlds diet, preventing obesity, and reducing weight stigma. | diet, nutrition | has parent organization: Yale University; Connecticut; USA | Obesity | Free, Freely available | nif-0000-31473 | https://medicine.yale.edu/internal-medicine/drc/resources/institutional/ruddcenter/ | SCR_003283 | Rudd Center for Food Policy & Obesity | 2026-08-10 09:31:58 | 1 |
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