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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ggsurvfit Resource Report Resource Website 1+ mentions |
ggsurvfit (RRID:SCR_025045) | software toolkit, software resource | Software R package for flexible time-to-event figures creation. Used to create figures ready for publication. | create figures, figures ready for publication, | works with: ggplot2 | Free, Available for download, Freely available | https://github.com/pharmaverse/ggsurvfit | SCR_025045 | 2026-08-09 09:09:09 | 8 | |||||||||
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Numba Resource Report Resource Website 1+ mentions |
Numba (RRID:SCR_025056) | software application, software resource | Open source JIT compiler that translates subset of Python and NumPy code into fast machine code. Can compile large subset of numerically-focused Python, including many NumPy functions. Has support for automatic parallelization of loops, generation of GPU-accelerated code, and creation of ufuncs and C callbacks. | Accelerate Python functions, JIT compiler, translate subset of Python and NumPy code into fast machine code, | Anaconda ; Inc. |
Free, Available for download, Freely available, | https://numba.pydata.org, https://github.com/numba/numba/blob/c6da26929c7fc18b06dd2e5fc86982cea828df6c/docs/source/index.rst | SCR_025056 | 2026-08-09 09:09:09 | 8 | |||||||||
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Abaqus FEA Resource Report Resource Website 10+ mentions |
Abaqus FEA (RRID:SCR_024997) | software application, software resource | Software suite for finite element analysis and computer aided engineering. | Simulia, finite element analysis, computer aided engineering, | Restricted | https://en.wikipedia.org/wiki/Abaqus | SCR_024997 | Simulia Abaqus FEA | 2026-08-09 09:09:08 | 28 | |||||||||
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Prisma/DB Resource Report Resource Website |
Prisma/DB (RRID:SCR_025246) | source code, software resource | Software application as cryptographic security layer for relational database systems, that currently supports Microsoft SQL Server, MySQL, MariaDB, PostgreSQL and CockroachDB. Security layer for relational database systems. | Security layer, security for relational database systems, | Free, Available for download, Freely available | SCR_025246 | 2026-08-09 09:09:11 | 0 | |||||||||||
|
gridExtra Resource Report Resource Website 10+ mentions |
gridExtra (RRID:SCR_025249) | software toolkit, software resource | Softwate R package to work with "grid" graphics, notably to arrange multiple grid-based plots on page, and draw tables. Miscellaneous functions for Grid graphics. | Miscellaneous functions for Grid graphics, Grid, functions for graphics, arrange multiple grid based plots, draw tables, | Free, Available for download, Freely available | SCR_025249 | 2026-08-09 09:09:11 | 20 | |||||||||||
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bioKGQA-KGT Resource Report Resource Website 1+ mentions |
bioKGQA-KGT (RRID:SCR_025176) | source code, software resource | Software contains all scripts and instructions for running Knowledge Graph-based Thought model, which is knowledge graph enhanced LLMs framework for pan-cancer question answering. | pan-cancer knowledge graph, large language model, knowledge graph question answering, | Free, Available for download, Freely available | SCR_025176 | 2026-08-09 09:08:39 | 2 | |||||||||||
|
krypto Resource Report Resource Website |
krypto (RRID:SCR_025179) | source code, software resource | Software C++ implementation of multivariate quadratic FHE. | C++ implementation, multivariate quadratic FHE, | Free, Available for download, Freely available | SCR_025179 | 2026-08-09 09:08:39 | 0 | |||||||||||
|
MOVARSim Resource Report Resource Website 1+ mentions |
MOVARSim (RRID:SCR_025388) | source code, software resource | Software simulator that leverages data-driven information to set both variants and reads characteristics, producing realistic tumoral samples. Computational modelling of cancer-specific variants and sequencing reads characteristics for realistic tumoral sample simulation. | simulator, leverages data-driven information, variants and reads characteristics, producing realistic tumoral samples, modelling of cancer-specific variants and sequencing reads, | has parent organization: University of Padua; Padua; Italy | Free, Available for download, Freely available | SCR_025388 | Modelling Of cancer-specific Variants And sequencing Reads Simulation | 2026-08-09 09:08:43 | 1 | |||||||||
|
LAMBADA Resource Report Resource Website 1+ mentions |
LAMBADA (RRID:SCR_025382) | data or information resource, atlas, reference atlas | Reference atlas of the developing post-natal mouse brain. Provides data and annotations on distribution of cells and gene expression in mouse brain. | developing post-natal mouse brain, mouse brain, developing brain, distribution of cells, gene expression, | Free, Freely available | SCR_025382 | Lightsheet Aligned Mouse Brain Annotated Developmental Atlas | 2026-08-09 09:09:14 | 1 | ||||||||||
|
PhysiCell Studio Resource Report Resource Website 10+ mentions |
PhysiCell Studio (RRID:SCR_025311) | source code, software resource | Software graphical tool to allow easy editing of (XML) model, create initial positions of cells, run simulation, and visualize results. To contribute, fork and make PRs to the development branch. Used to create, execute, and visualize multicellular model using PhysiCell. | create, execute, visualize, multicellular model, create initial positions of cells, | NSF ; NCI U01 CA232137; Breast Cancer Research Foundation ; Jayne Koskinas Ted Giovanis Foundation for Health and Policy ; European Commission |
PMID:37961612 | Free, Available for download, Freely available | SCR_025311 | 2026-08-09 09:09:12 | 15 | |||||||||
|
JATSdecoder Resource Report Resource Website |
JATSdecoder (RRID:SCR_025279) | software toolkit, software resource | Software metadata and text extraction and text manipulation tool set for statistical programming language R. Facilitates text mining projects on scientific articles in 'NISO-JATS' format by enabling individual selection of metadata and text parts. | metadata and text extraction, text manipulation, text mining, scientific articles in 'NISO-JATS' format, | has parent organization: University of Hamburg; Hamburg; Germany | Free, Available for download, Freely available | https://CRAN.R-project.org/package=JATSdecoder | SCR_025279 | 2026-08-09 09:08:41 | 0 | |||||||||
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py_diAID Resource Report Resource Website 1+ mentions |
py_diAID (RRID:SCR_025304) | software toolkit, software resource | Software Python package for DIA with automated isolation design. Used for Data-Independent Acquisition providing Automated Isolation Design. Optimally generates dia-PASEF and synchro-PASEF methods and places them optimally within the m/z – ion mobility (IM) plane. | Data-Independent Acquisition, DIA, automated isolation design, | Max-Planck Society for Advancement of Science ; Bavarian State Ministry of Health and Care |
PMID:35944843 | Free, Available for download, Freely available | SCR_025304 | python_data-independentAutomated Isolation Design | 2026-08-09 09:09:12 | 5 | ||||||||
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Incucyte Cell-By-Cell Analysis Software Module Resource Report Resource Website 1+ mentions |
Incucyte Cell-By-Cell Analysis Software Module (RRID:SCR_025367) | software application, software resource | Software for analysis to determine live versus dead cells – no fluorescent dyes needed. | determine live versus dead cells, no fluorescent dyes needed, analysis | Restricted | SCR_025367 | 2026-08-09 09:09:13 | 3 | |||||||||||
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DokuMate Resource Report Resource Website |
DokuMate (RRID:SCR_025402) | software application, software resource | DokuMate helps standardize and reuse documents, simplifies and speeds-up editing, and automates many tedious tasks. A docId” is one of the “magic” Content Control tag names. A docId is an alphanumerical ID (e.g., “R01-01-C00”, “R01-11-100”, “R01-11-410”, “R01-30-100”) that uniquely identifies and sorts documents (e.g., Schedule C, Exhibit 1, Attachment 4.1, Appendix 1) within a larger set of documents, e.g., all documents belonging to (a) a specific RFP or (b) the set of contracts between a first party and a second party. | automate documents, simplify editing, automate task, Content Control tag names, | Restricted | SCR_025402 | 2026-08-09 09:09:13 | 0 | |||||||||||
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cameraCalibrationCMOS Resource Report Resource Website 1+ mentions |
cameraCalibrationCMOS (RRID:SCR_025339) | source code, software resource | Software for performing pixelwise calibration of sCMOS cameras. MATLAB code and instructions for routine camera calibration. | MATLAB code, instructions for routine camera calibration, performing pixelwise calibration, sCMOS cameras, | Free, Available for download, Freely available | SCR_025339 | 2026-08-09 09:08:42 | 2 | |||||||||||
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Winnowmap Resource Report Resource Website 10+ mentions |
Winnowmap (RRID:SCR_025349) | source code, software resource | Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats. | long-read mapping, ONT and PacBio reads, repetitive reference sequences, paralog specific variants within repeats, | NHGRI ; Indian Institute of Science |
PMID:35365778 | Free, Available for download, Freely available | SCR_025349 | Winnowmap2 | 2026-08-09 09:08:42 | 26 | ||||||||
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Ready Set Potato Resource Report Resource Website |
Ready Set Potato (RRID:SCR_025289) | software application, software resource | Software tool that helps users write experimental protocols. | experimental protocols, write experimental protocols, | Restricted | SCR_025289 | 2026-08-09 09:08:41 | 0 | |||||||||||
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Developmental Mouse Brain atlas Resource Report Resource Website |
Developmental Mouse Brain atlas (RRID:SCR_025324) | DeMBA | data or information resource, atlas, reference atlas | Continuous 3D reference atlas for postnatal mouse brain. | EBRAINS, 3D reference atlas, postnatal mouse brain, | is related to: Allen Mouse Brain Common Coordinate Framework | Free, Freely available, | SCR_025324 | 2026-08-09 09:09:13 | 0 | |||||||||
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yEd Resource Report Resource Website 1+ mentions |
yEd (RRID:SCR_025325) | software application, software resource | Software desktop application as general purpose diagramming program with multi-document interface. Cross-platform Java application to generate high-quality diagrams. Runs on Windows, Linux, Mac OS, and other platforms that support Java Virtual Machine. | yWorks, Java, general purpose diagramming program, diagrams, | Restricted | SCR_025325 | yWorks yEd Graph Editor | 2026-08-09 09:08:42 | 7 | ||||||||||
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Thermo Scientific NanoDrop 1000 Software Resource Report Resource Website |
Thermo Scientific NanoDrop 1000 Software (RRID:SCR_025282) | software application, software resource | Operating software for Thermo Scientific NanoDrop 1000 Spectrophotometer. Free NanoDrop operating software to update your instrument. | Operating software, Thermo Scientific NanoDrop 1000 Spectrophotometer, update your instrument, | works with: Thermo Fisher: Nanodrop 1000 Spectrophotometer | Free, Available for download, Freely available | SCR_025282 | 2026-08-09 09:09:12 | 0 |
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