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http://www.uth.edu/

Proper citation: University of Texas Health Science Center at Houston; Texas; USA (RRID:SCR_011721) Copy   

•   Source: SciCrunch Registry

https://jmorp.megabank.tohoku.ac.jp/

Japanese multi omics reference panel. Provides multidimensional approach to diversity of Japanese population. Public database for plasma metabolome and proteome analyses. Updated to metabolome, genome, transcriptome, metagenome, number of samples, analysis methods of each dataset, expanding links between each layer and links between hierarchies.

Proper citation: jMORP (RRID:SCR_024755) Copy   

•   Source: SciCrunch Registry

http://mlodis.phasep.pro/

Manually curated database of relations between phase separation and diseases.

Proper citation: PhaSeDis (RRID:SCR_024963) Copy   

•   Source: SciCrunch Registry

https://pxdata.stat.fi/PxWeb/pxweb/en/StatFin/

Finland's statistical database contains collection of statistical tables on Finnish society and population of Finland including economy, housing, transport, tourism, consumption, prices, wages and salaries, energy, enterprises and other topics.

Proper citation: StatFin database (RRID:SCR_024843) Copy   

•   Source: SciCrunch Registry

http://db.phasep.pro/

Provides a collection of manually curated phase separation (PS) proteins and Membraneless organelles (MLOs) related proteins. Annotated phase separation-related proteins with droplet states, co-phase separation partners and other experimental information.

Proper citation: PhaSepDB (RRID:SCR_024964) Copy   

•   Source: SciCrunch Registry

https://npcr.se/in-english/

National Prostate Cancer Register of Sweden database.

Proper citation: National Prostate Cancer Register of Sweden (RRID:SCR_024844) Copy   

•   Source: SciCrunch Registry

https://maayanlab.cloud/drugmonizome/#/

Database with search engine for querying annotated sets of drugs and small molecules for performing drug set enrichment analysis.

Proper citation: Drugmonizome (RRID:SCR_024821) Copy   

•   Source: SciCrunch Registry

https://msgp.pt/

Database of protein components of mammalian stress granules.

Proper citation: Mammalian Stress Granules Proteome (RRID:SCR_024946) Copy   

•   Source: SciCrunch Registry

https://pephub.databio.org

Web biological metadata server to view, store, and share your sample metadata in form of Portable Encapsulated Projects. PEPhub takes advantage of PEP biological metadata standard to store, edit, and access your PEPs in one place. Components include database where PEPs are stored; API to programmatically read and write PEPs in database; web based user interface to view and manage these PEPs via front end.

Proper citation: PEPhub (RRID:SCR_024892) Copy   

•   Source: SciCrunch Registry

https://resources.aertslab.org/cistarget/

Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations.

Proper citation: cisTarget (RRID:SCR_024808) Copy   

•   Source: SciCrunch Registry

https://github.com/pmenzel/ont-assembly-snake

Software Snakemake workflow for bacterial genome assembly plus polishing for Oxford Nanopore sequencing using multiple tools.

Proper citation: ont-assembly-snake (RRID:SCR_024898) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/circlize/

Software package that implements and enhances circular visualization in R. Due to natural born feature of R to draw statistical graphics, this package can provide more general and flexible way to visualize huge information in circular style.

Proper citation: circlize (RRID:SCR_002141) Copy   

•   Source: SciCrunch Registry

https://www.tfcheckpoint.org/

Collection of transcription factors annotated according to experimental and other evidence on their function as true DbTFs. Provides reference for both small scale experiments and genome scale studies. Curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Proper citation: tfcheckpoint (RRID:SCR_023880) Copy   

•   Source: SciCrunch Registry

https://tcmsp-e.com/tcmsp.php

Pharmacology platform of Chinese herbal medicines that captures relationships between drugs, targets and diseases. Database includes chemicals, targets and drug-target networks, and associated drug-target-disease networks, as well as pharmacokinetic properties for natural compounds involving oral bioavailability, drug-likeness, intestinal epithelial permeability, blood-brain-barrier, aqueous solubility.

Proper citation: Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (RRID:SCR_023757) Copy   

•   Source: SciCrunch Registry

http://www.medtronic.com/

Medical technology company that develops and manufactures devices and therapies to treat more than 30 chronic diseases, including heart failure, Parkinson's disease, urinary incontinence, Down syndrome, obesity, chronic pain, spinal disorders, and diabetes. A Commercial healthcare organization for both patients and healthcare professionals. For professionals, it provides products, therapy and procedure solutions, and services.

Proper citation: Medtronic (RRID:SCR_003988) Copy   

•   Source: SciCrunch Registry

http://www.ifpcs.org/albinism/

Database of mutations associated with all major known forms of oculocutaneous and ocular albinism. The Albinism Database is part of the Locus Specific Mutation Databases of the Human Genome Variation Society and accepts the submission of new mutations. A link is provided for submission of new mutations. Columns in the database include: type of albinism, human locus, omim link, link to table of mutations and polymorphisms, and map of mutation locations.

Proper citation: Albinism database (RRID:SCR_000632) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/muma/

Software that provides guidelines for the whole process of metabolomic data interpretation, from data pre-processing, to dataset exploration and visualization, to identification of potentially interesting metabolites. Guidelines outline the following processes: preprocessing of high-throughput data (normalization and scalings); principal component analysis with help tool for choosing best-separating principal components and automatic testing for outliers; automatic univariate analysis for parametric and non-parametric data, with generation of specific reports (volcano and box plots); partial least square discriminant analysis (PLS-DA); orthogonal partial least square discriminant analysis (OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY); and Ratio Analysis Nuclear Magnetic Resonance (NMR) Spectroscopy (RANSY).

Proper citation: MUMA (RRID:SCR_002412) Copy   

•   Source: SciCrunch Registry

http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?link_loc=BlastHomeAd

COBALT is a multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST. Pairwise constraints are then incorporated into a progressive multiple alignment. A Linux executable for COBALT, and CDD and PROSITE data used is available at ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/cobalt/ COBALT has reasonable runtime performance and alignment accuracy comparable to or exceeding that of other tools for a broad range of problems.

Proper citation: COBALT: Constraint-based Multiple Alignment Tool (RRID:SCR_004152) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/

A hosting site for the distributed version control systems (DVCS) Git and Mercurial. The service offering includes an issue tracker and wiki, as well as integration with a number of popular services such as Basecamp, Flowdock, and Twitter.

Proper citation: Bitbucket (RRID:SCR_000502) Copy   

•   Source: SciCrunch Registry

https://www.vet.k-state.edu/research/docs/BRITE-application.pdf

The BRITE Veterinary Student Program provides DVM students interested in research with a subsidized, in-depth mentored research experience. The opportunity can be used to gain research experience, to obtain an MS, or to jump-start a DVM/PhD program. The BRITE veterinary student program is designed to expose DVM students to hypothesis-driven research activities, methodologies involved in design and execution of laboratory experiments and ethical issues pertinent to biomedical research, at a formative stage of their veterinary education. BRITE veterinary students are given a unique opportunity to utilize the rigorous didactic basic science training obtained during the first two years of the professional curriculum in pursuit of a research problem relevant to human and animal health. Sponsors: The program is funded by Kansas State University.

Proper citation: Basic Research Immersion Training Experience Veterinary Student Program (RRID:SCR_008305) Copy   

•   Source: SciCrunch Registry