Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://CRAN.R-project.org/package=irrICC
Software R package to calculate various intraclass correlation coefficients. Used to quantify inter-rater and intra-rater reliability.
Proper citation: Intraclass Correlations for Quantifying Inter Rater Reliability (RRID:SCR_023175) Copy
https://www.google.com/intl/de/forms/about/
Software for creating surveys and questionnaires.
Proper citation: Google Forms (RRID:SCR_023174) Copy
https://github.com/sapporo-wes/tonkaz
Software CLI tool to verify workflow reproducibility.
Proper citation: Tonkaz (RRID:SCR_023206) Copy
https://github.com/fritzsedlazeck/SURVIVOR
Software tool set for simulating and evaluating SVs, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize SVs. Used for for SV simulation, comparison and filtering.
Proper citation: SURVIVOR (RRID:SCR_022995) Copy
https://github.com/sapporo-wes/yevis-cli
Software CLI tool to support building and maintaining Yevis workflow registry.
Proper citation: Yevis cli (RRID:SCR_023204) Copy
https://CRAN.R-project.org/package=Rtrack
Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video.
Proper citation: Rtrack (RRID:SCR_023025) Copy
https://www.dtu.ox.ac.uk/homacalculator/
Software tool used to calculate Homeostasis Model Assessment which takes account of variations in hepatic and peripheral glucose resistance, increases in insulin secretion curve for plasma glucose concentrations and contribution of circulating proinsulin. Provides access to HOMA2 model for researchers who wish to use model derived estimates of %B and %S, rather than linear approximations.
Proper citation: HOMA2 calculator (RRID:SCR_023419) Copy
https://www.vitalimages.com/enterprise-imaging-solution/diagnostic-viewer/
Software application providing tools and features that may be used for general purpose radiological viewing and reading of image data from various imaging modalities, clinical review and performs functions of digital image processing, measurement, communications and storage.
Proper citation: Vitrea Read Diagnostic Viewer (RRID:SCR_023418) Copy
https://github.com/marbl/merqury
Software toolkit for reference free quality, completeness, and phasing assessment for genome assemblies. Genome assembly quality evaluation based on k-mers.
Proper citation: Merqury (RRID:SCR_022964) Copy
https://github.com/Kinggerm/GetOrganelle
Software toolkit to assembly of organelle genome from genomic skimming data. Used for accurate de novo assembly of organelle genomes.
Proper citation: GetOrganelle (RRID:SCR_022963) Copy
https://github.com/CJ-Chen/TBtools-Manual
Software integrative toolkit developed for interactive analyses of big biological data.
Proper citation: TBtools (RRID:SCR_023018) Copy
https://github.com/JustinChu/JupiterPlot
Software pipeline for generating Circos based genome assembly consistency plot given set of contigs relative to reference genome. Intended to visualize large scale translocations or missassemblies in draft assemblies, but it can also be useful when trying to show synteny between whole genomes.Circos based tool to visualize genome assembly consistency
Proper citation: JupiterPlot (RRID:SCR_022961) Copy
https://github.com/virajbdeshpande/AmpliconArchitect
Software package designed to call circular DNA from short read WGS data.Used to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates architecture of amplicon.Used to reconstruct structure of focally amplified regions using whole genome sequencing and validate it extensively on multiple simulated and real datasets, across wide range of coverage and copy numbers.
Proper citation: AmpliconArchitect (RRID:SCR_023150) Copy
https://www.beckman.com/liquid-handlers/software/sami-ex#product-table-wrapper
Software tool provides automation and process control across wide variety of applications, creates planned data driven schedules in optimized and predictable scheduling environment.
Proper citation: SAMI Ex (RRID:SCR_023271) Copy
https://github.com/findCP/findCPcli
Software command line Python package for computation of chokepoint reactions in genome scale metabolic models. Used to compute chokepoints by taking into account both topology and dynamic information of network. Can compute and remove dead-end metabolites, find essential reactions and update flux bounds of reactions according to results of Flux Variability Analysis.
Proper citation: findCPcli (RRID:SCR_023391) Copy
https://github.com/lufuhao/mitochondria-simulator
Software repository for mtDNA assembly project.
Proper citation: mitochondria simulator (RRID:SCR_023430) Copy
https://trabucayre.github.io/openFPGALoader
Universal utility for programming FPGAs. Compatible with many boards, cables and FPGA from major manufacturers (Xilinx, Altera/Intel, Lattice, Gowin, Efinix, Anlogic, Cologne Chip). Works on Linux, Windows and macOS.
Proper citation: openFPGALoader (RRID:SCR_023153) Copy
https://pypi.org/project/synchCams/
Software toolbox for synchronized dual camera acquisition. Library for acquisition of synchronized dual camera video. Videos are saved with alternate acquisition of frames what ensures equal number of frames.
Proper citation: synchCams (RRID:SCR_023152) Copy
https://www.beckman.com/liquid-handlers/software/dart
Software package that gathers data and synthesizes runtime information from Biomek log files to capture each manipulation of sample during course of method.
Proper citation: Data Acquisition and Reporting Tool (RRID:SCR_023272) Copy
https://CRAN.R-project.org/package=sf
Software R package as set of standards that specify common storage and access model of geographic features made of mostly two dimensional geometries used by geographic information systems. Standardized way to encode spatial vector data. Formalized by Open Geospatial Consortium and International Organization for Standardization.
Proper citation: Simple Features (RRID:SCR_023393) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within RRID that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
