Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MARIA Resource Report Resource Website |
MARIA (RRID:SCR_028673) | software resource, web application | Web multimodal recurrent neural network tool designed to predict HLA-II (Human Leukocyte Antigen class II) peptide ligand presentation. It uses cell HLA alleles, peptide sequences, and source genes to evaluate antigen presentation. Used for predicting the likelihood of antigen presentation from a gene of interest in the context of specific HLA class II alleles. | multimodal recurrent neural network, predicting likelihood of antigen presentation, gene of interest, specific HLA class II alleles, | is organization facet of: Stanford University; Stanford; California | NCI K08 CA207882; NCI U01 CA194389; NCRR S10RR027431; NIGMS GM 102365 |
PMID:31611695 | Free, Freely available | SCR_028673 | MARIA:Major Histocompatibility Complex Analysis with Recurrent Integrated Architecture | 2026-09-12 01:05:57 | 0 | |||||||
|
University of Arkansas AIMRC Data Science Core Facility Resource Report Resource Website |
University of Arkansas AIMRC Data Science Core Facility (RRID:SCR_028681) | access service resource, core facility, service resource | Core specializes in artificial intelligence-based approaches to elucidate relationships between large imaging, bioenergetics, genomic, and proteomic data sets. Provided services include: 1) foundational training for those getting started with high-performance computing and Arkansas Research Platform (ARP), 2) training and support for the collaborative use of a 508 TB data storage server exclusively maintained for and catering to AIMRC researchers, 3) training for Python programming, basic data mining, and machine learning, 4) training and support for using open-source deep learning based biomedical imaging resources (e.g., ZeroCostDL4Mic and Bioimage Model Zoo), and 5) customized solutions for deep learning based and large foundational models based biomedical imaging analysis, multi-omics data integration and analysis, and quantitative analysis pipelines for large data sets. | ABRF, Center of Biomedical Research Excellence (COBRE), data science services, large imaging, bioenergetics, genomic, proteomic, data sets, |
is listed by: ABRF CoreMarketplace has parent organization: University of Arkansas; Arkansas; USA |
NIGMS P20GM139768 | ABRF_6033 | https://coremarketplace.org/RRID:SCR_028681/?citation=1 | SCR_028681 | , Arkansas Integrative Metabolic Center (AIMRC) Data Science Core | 2026-09-12 01:05:57 | 0 | |||||||
|
Creighton University Flow Cytometry Core Facility Resource Report Resource Website |
Creighton University Flow Cytometry Core Facility (RRID:SCR_028881) | access service resource, core facility, service resource | Core provides flow cytometry services. | ABRF, flow cytometry services, |
is listed by: ABRF CoreMarketplace has parent organization: Creighton University; Nebraska; USA |
NIGMS 3P20GM139762; NIGMS 3R01GM102487 |
Restricted | ABRF_6145 | https://coremarketplace.org/?FacilityID=6145&citation=1 | SCR_028881 | CU Flow Cytometry Core | 2026-09-12 01:06:01 | 0 | ||||||
|
Ocean State Research Institute Providence VA Medical Center Cell Isolation and Organ Function Core Facility Resource Report Resource Website |
Ocean State Research Institute Providence VA Medical Center Cell Isolation and Organ Function Core Facility (RRID:SCR_028797) | CIOF Core | access service resource, core facility, service resource | Core provides investigators with access to specialized expertise in primary cell isolation, ex vivo organ function assessment, histology, and advanced tissue imaging. The Core supports cardiovascular, pulmonary, and vascular research through customized experimental services, consultation, and rigorous functional and molecular analyses that accelerate mechanistic discovery and translational research. | ABRF, Primary Cell Isolation, Endothelial Cell Biology, Cardiac Fibroblasts, Ex Vivo Organ Function, Vascular Function, Histology, Immunohistochemistry, Immunofluorescence, RNAscope, Quantitative Image Analysis, Tissue Phenotyping, Cardiovascular Biology, Pulmonary Biology, Translational Research | is listed by: ABRF CoreMarketplace | NIGMS P30GM149398 | ABRF_6114 | https://coremarketplace.org/RRID:SCR_028797/?citation=1 | SCR_028797 | , Cell Isolation and Organ Function (CIOF) Core | 2026-09-12 01:05:59 | 0 | ||||||
|
West Virginia University Flow Cytometry and Single Cell Core Facility Resource Report Resource Website 10+ mentions |
West Virginia University Flow Cytometry and Single Cell Core Facility (RRID:SCR_017738) | access service resource, core facility, service resource | Facility provides instrumentation and scientific support for single cell analysis and sorting. Routinely performs analysis of both eukaryotic and prokaryotic cells for expression of intracellular and extracellular proteins, cell cycle, cell proliferation, cytokine production, and cell sorting based on expression of cell surface antigen(s) and/or expression of genetically engineered intercellular fluorescent proteins. | Single, cell, analysis, sorting, flow, cytometry, West Virginia, service, core | NCRR RR020866; NIGMS P20 GM103434; NIGMS P20 GM109098; NIGMS P30 GM103488; NIGMS U51 GM104942; NIGMS U54 GM104942; NIH Office of the Director S10 OD016165 |
Open | ABRF_221 | SCR_017738 | FCSCCF, WVU Flow Cytometry and Single Cell Core Facility | 2026-09-12 01:04:01 | 15 | ||||||||
|
Arkansas University College of Medicine Flow Cytometry Core Facility Resource Report Resource Website |
Arkansas University College of Medicine Flow Cytometry Core Facility (RRID:SCR_017741) | access service resource, core facility, service resource | Core provides flow cytometry instrumentation and analysis. Instruments include Fortessa, FacsAria and Image Stream. | Flow, cytometry, biopolymer, proteomics, data, analysis, service, core | NIGMS P20 GM103625 | ABRF_215 | SCR_017741 | Biopolymers and Proteomics Core Facility | 2026-09-12 01:04:01 | 0 | |||||||||
|
South Dakota University SD BRIN Proteomics Core Facility Resource Report Resource Website |
South Dakota University SD BRIN Proteomics Core Facility (RRID:SCR_017743) | access service resource, core facility, service resource | Core provides proteomics services to researchers from South Dakota and the surrounding region to rapidly analyze and identify protein expression patterns in their experimental systems.Develops experimental design, protocols, data analysis and interpretation.Provides consulting and advice in grant proposal, as well as data preparation to be submitted to proteomics journal according to requirements.Offers training in use of common equipment such as scanner, spot cutter, imaging software, technique and protocol issues, and sample preparation. | Proteomics, protein, expression, analysis, data, experimental, design, training, service, core | NIGMS ; Sanford School of Medicine and South Dakota Biomedical Research Infrastructure Network |
Open | ABRF_224 | SCR_017743 | Proteomics Core | 2026-09-12 01:04:01 | 0 | ||||||||
|
Brown University Transgenic and Gene Targeting Core Facility Resource Report Resource Website |
Brown University Transgenic and Gene Targeting Core Facility (RRID:SCR_017690) | MTGTF | access service resource, core facility, service resource | MTGTF is to support the investigators in using genetically modified mouse models in Brown University, affiliated hospitals and academic institutions in Rhode Island and other states. Provides services of molecular design and generation of transgenic and knock-out mouse models as well as general advice on use and management of such models. Conventional ES cell gene-targeting system is employed to serve as alternative or to fill the limitations of CRISPR/Cas9 system. Routine services include genotype analysis, sperm or embryo cryopreservation and storage, rederivation, in vitro fertilization (IVF). Other services, such as mouse vasectomy, embryo transfer, colony scale-up, intracytoplasmic sperm injection (ICSI) are also available. New services requiring MTGTF resources can be created through request. | Genetically, modified, mouse, model, support, molecular, design, transgenic, knock-out, ES, cell, targeting, system, CRISPR/Cas9, genotype, analysis, sperm, embryo, cryopreservation, storage, fertilization, vasectomy, service, core | NIGMS P30 GM103410 | Open | ABRF_79, SCR_017708 | SCR_017690 | Mouse Transgenic and Gene Targeting Facility | 2026-09-12 01:04:00 | 0 | |||||||
|
Kansas University at Lawrence High Throughput Screening Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Kansas University at Lawrence High Throughput Screening Laboratory Core Facility (RRID:SCR_017752) | KU-HTSL | access service resource, core facility, service resource | Core offers high throughput screening of large chemical libraries of compounds to identify novel chemical entities that target biological system of interest.Provides target identification and validation, assay development, high throughput screening, hit confirmation, data mining and medicinal chemistry to facilitate hit to lead development. | Screening, large, chemical, library, compound, novel, entity, target, identification, validation, assay, development, data, mining, medicinal, chemistry, service, core | NIGMS P30 GM103495; State of Kansas ; University of Kansas |
Open | ABRF_254 | SCR_017752 | High Throughput Screening Laboratory at KU | 2026-09-12 01:04:01 | 1 | |||||||
|
University of New England In Vivo Behavior Core Facility Resource Report Resource Website 1+ mentions |
University of New England In Vivo Behavior Core Facility (RRID:SCR_017883) | access service resource, core facility, service resource | Core provides technical expertise, training, instrumentation and related services for assessing behavior in animals to help to gain insight into function of nervous system and mechanisms of acute and chronic pain. Services include Behavioral Testing; General Behavioral Phenotyping: Observational Screens, Motor Function; Pain/Sensory Testing: Thermal, Mechanical, Chemical; Additional Neurobehavioral Tests: Psychiatric, Addiction, Learning and Memory;Miscellaneous Systems: GI Transit, Cardiovascular and Respiration. Other Services: Assistance choosing behavioral test and statistical tests for assessing results; Training in surgical techniques for small animal surgeries; Staff expertise includes surgical methods for producing pain models; dosing of drugs/anesthetics including central, systemic and localized administration; and tissue extractions. | in vivo, behavior, pain, sensory testing, training, function, addiction, neuropathic, CIPN, , system, acute, chronic, mechanism, motor, learning, memory, neurobehavioral |
is listed by: ABRF CoreMarketplace has parent organization: University of New England; Biddeford; USA |
NIGMS P30GM145497 | Open | https://coremarketplace.org/?FacilityID=758 | SCR_017883 | In Vivo Behavior Core | 2026-09-12 01:04:04 | 1 | |||||||
|
Nemours/A.I.duPont Hospital for Children Cell Science Core Facility Resource Report Resource Website |
Nemours/A.I.duPont Hospital for Children Cell Science Core Facility (RRID:SCR_017854) | CSC | access service resource, core facility, service resource | Core specializes in cell, protein, and small molecules analysis as well as cell culture techniques. Services include:2-D gel electrophoresis, 2-D DIGE, LC-MS/MS, HPLC, flow cytometry, fluorescence-activated cell sorting (FACS), cell and tissue culture, and immortalization of cell lines. Our staff works closely with investigators to help design, perform, and analyze experiments.Offers training and assistance in flow cytometry, tissue culture, and operation many of our walk-up instruments.Instruments:Cell Sorter: FACS Aria III, BD Biosciences;Flow Cytometers, analyzers:C6, Accuri/BD Biosciences;Novocyte 3000, ACEA Biosciences;software for analysis: FSC Express, DeNovo software;LC-MS/MS: 6460 Triple Quadrupole, Agilent;Typhoon Trio Scanner, GE Lifesciences;Blood Analyzer: Hemavet 950, Drew Scientific.Plate Readers:;Victor Nivo 5F, Perkin Elmer;Luminometer: Centro XS, Berthold.Services:Cell Sorting (FACS);2-D gel electrophoresis/2D-DIGE;LC-MS/MS analysis of compounds; Cell immortilization. | Cell, protein, small, molecules, analysis, culture, electrophoresis, 2D DIGE, LC-MS/MS, HPLC, FACS, immortalization, flow, cytometry, sorting, training, service, core, | NIGMS P30 GM114736 | Open | ABRF_662 | SCR_017854 | Cell Science Core | 2026-09-12 01:04:03 | 0 | |||||||
|
BEERS2 Resource Report Resource Website |
BEERS2 (RRID:SCR_027287) | simulation software, software application, software resource, source code | Software for simulation of RNA-seq reads. Combines flexible and highly configurable design with detailed simulation of entire library preparation and sequencing pipeline and is designed to include effects of polyA selection and RiboZero for ribosomal depletion, hexamer priming sequence biases, GC-content biases in polymerase chain reaction (PCR) amplification, barcode read errors and errors during PCR amplification. | RNA-seq reads, simulation of RNA-seq reads, | NCATS 5UL1TR000003; NHLBI R01HL147472; NHLBI R01HL155934; NIGMS DP2GM146251 |
PMID:38605641 | Free, Available for download, Freely available | SCR_027287 | 2026-09-12 01:05:23 | 0 | |||||||||
|
CytoML Resource Report Resource Website 1+ mentions |
CytoML (RRID:SCR_027485) | software resource, software toolkit, source code | Software R package that enables cross-platform import, export, and sharing of gated cytometry data. It currently supports Cytobank, FlowJo, Diva, and R, allowing users to import gated cytometry data from commercial platforms into R. | Cross-platform cytometry data sharing, cross-platform import, export, sharing, gated cytometry data, import gated cytometry data, | Bill and Melinda Gates Foundation ; NIAID UM1 AI068635; NIGMS R01 GM118417 |
PMID:30551257 | Free, Available for download, Freely available | https://www.bioconductor.org/packages/release/bioc/html/CytoML.html | SCR_027485 | 2026-09-12 01:05:28 | 6 | ||||||||
|
BioLiP Resource Report Resource Website 100+ mentions |
BioLiP (RRID:SCR_027685) | data or information resource, database | Semi-manually curated database for biologically relevant ligand-protein binding interactions. Structure data are collected primarily from Protein Data Bank (PDB), with biological insights mined from literature and other specific databases. Database used for serving needs of ligand-protein docking, virtual ligand screening and protein function annotation.BioLiP2 offers significantly greater coverage of nucleic acid-protein interactions, and interactions involving large complexes, integrates structural alignment algorithms with structure prediction techniques, which enables composite protein structure and sequence-based searching. | curated database, ligand-protein binding interactions, ligand-protein docking, virtual ligand screening, protein function annotation, | uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) | National Science Foundation ; NIGMS GM083107; NIGMS GM084222 |
PMID:23087378 PMID:37522378 |
Free, Freely available | SCR_027685 | BioLiP2 | 2026-09-12 01:05:33 | 127 | |||||||
|
SQuIRE Resource Report Resource Website 10+ mentions |
SQuIRE (RRID:SCR_027719) | SQuIRE | software resource, software toolkit, source code | Software RNA-seq analysis pipeline that provides quantitative and locus-specific picture of Transposable Elements expression. | RNA-seq analysis, quantitative and locus-specific picture of TE expression, Transposable Elements expression, | NIGMS P50GM107632; NIGMS R01GM124531 |
PMID:30624635 | Free, Available for download, Freely available | SCR_027719 | , Software for Quantifying Interspersed Repeat Expression (SQuIRE), Software for Quantifying Interspersed Repeat Expression | 2026-09-12 01:05:34 | 11 | |||||||
|
BISCUIT Resource Report Resource Website 1+ mentions |
BISCUIT (RRID:SCR_028006) | software resource, software toolkit | Software application for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Used to perform alignment, DNA methylation and mutation calling, and allele specific methylation from bisulfite sequencing data. Analyzing sodium bisulfite conversion-based DNA methylation/modification data. | simultaneous genetic and epigenetic inference, analyzing sodium bisulfite conversion-based DNA methylation/modification data, perform alignment, DNA methylation, mutation calling, allele specific methylation, bisulfite sequencing data, | NCI R37CA230748; NCI U24CA264023; NIGMS R35GM146978 |
PMID:38412294 | Free, Available for download, Freely available | SCR_028006 | , BISulfite-seq CUI Toolkit, BISulfite-seq CUI Toolkit (BISCUIT) | 2026-09-12 01:05:41 | 2 | ||||||||
|
EpiProfile Resource Report Resource Website |
EpiProfile (RRID:SCR_028224) | software application, software resource, source code | Software tool for processing Epi-Proteomics mass spectrometry data. Discriminates isobaric histone peptides using distinguishing fragment ions in their tandem mass spectra and extracts the chromatographic area under the curve using previous knowledge about peptide retention time. Nanoflow liquid chromatography coupled with high resolution tandem mass spectrometry-based quantification tool for histone peptides, which can also be adapted to analyze nonhistone protein samples. EpiProfile 2.0 is extended version of v1.0 for enhanced quantification of histone peptides based on LC-MS/MS analysis. | LC-MS/MS analysis, peptide, quantification, histone, quantification of histone peptides, quantification of histone peptides based on LC-MS/MS analysis, mass spectrometry data, | NCATS TL1TR001880; NCI CA196539; NIAID AI118891; NIGMS GM110174; NIGMS T32GM008275; UPenn Epigenetics Institute |
PMID:25805797 PMID:29790754 |
Free, Available for download, Freely available | SCR_028224 | EpiProfile 2.0 | 2026-09-12 01:05:46 | 0 | ||||||||
|
HiTAIC Resource Report Resource Website |
HiTAIC (RRID:SCR_028181) | data access protocol, software resource, web service | Web-based application to trace tumor tissue of origin in primary and metastasized cancers. | Tumor classifier, trace tumor tissue of origin, primary and metastasized cancers, | NCI P30CA023108; NCI R01CA216265; NCI R01CA253976; NCI R01CA275974; NIGMS P20GM104416 |
PMID:37089814 | Free, Freely available | SCR_028181 | Hierarchical Tumor Artificial Intelligence Classifier | 2026-09-12 01:05:45 | 0 | ||||||||
|
ComBat-seq Resource Report Resource Website |
ComBat-seq (RRID:SCR_028999) | software application, software resource, source code | Software batch effect adjustment tool for bulk RNA-seq count data. | batch correction, batch effect adjustment, bulk RNA-seq count data, | NCI 4P30CA006516; NCI 5U01 CA220413; NIGMS 5R01GM127430; NSF |
PMID:33015620 | Free, Available for download, Freely available | SCR_028999 | 2026-09-16 10:46:10 | 0 | |||||||||
|
University of Oklahoma Biomolecular Structure Core Facility Resource Report Resource Website 1+ mentions |
University of Oklahoma Biomolecular Structure Core Facility (RRID:SCR_028074) | access service resource, core facility, service resource | Offers access to instrumentation, training and services for structure determination of macromolecular molecules using single crystal X-ray diffraction and/or cryo-EM Single Particle Analysis (SPA). Instrumentation is available for initial crystallization trials, optimization of crystallization, single crystal X-ray diffraction and data collection at synchrotron radiation facilities, as well as electron microscopy grid preparation for cryo-EM (SPA), screening and data collection using a Thermo Scientific Tundra Cryo-TEM and assistance for data collection at national laboratories. | ABRF, structure determination, macromolecular molecules, single crystal, X-ray diffraction, cryo-EM Single Particle Analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University of Oklahoma; Oklahoma; USA |
NIGMS P20GM103640; NIGMS P30GM145423; NSF 0922269 |
ABRF_5821 | https://coremarketplace.org/RRID:SCR_028074/?citation=1 | SCR_028074 | 2026-09-18 10:32:05 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
