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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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NIH Brics Resource Report Resource Website |
NIH Brics (RRID:SCR_015028) | BRICS | software resource, web application | Modular, web-based bioinformatics system for research studies and clinical trials data collection. Tools include a data dictionary, data repository, meta study, global unique identifiers for studies, protocol management and data capture, and query and exportation of data. | bioinformatics platform, data collection, bioinformatics tool | Available to the scientific community | SCR_015028 | SciCrunch Registry | Biomedical Research Informatics Computing System (BRICS), Biomedical Research Informatics Computing System | 2026-10-31 12:16:27 | 0 | |||||||||
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Open Biobank Resource Report Resource Website |
Open Biobank (RRID:SCR_005364) | Open Biobank | data or information resource, international standard specification, narrative resource, standard specification | This is a demo store. Any orders placed through this store will not be honored or fulfilled. The Open Biobank is a network of bio-banks, collaborators, and consumers supplying or acquiring samples that are proactively acquired for future testing, analysis, and/or replenishment for human life. Our goal is to supply quality samples to clinicians and researchers with making their ordering experience convenient, accessible, and available 24/7. Suppliers that we distribute for are Bio-Banks, Tissues Banks, and Seed Banks who supply samples to the open life science community. Samples are stored in bio-repositories, physical and data storage facilities with various controlled environments normally containing associated data history on the sample(s) sourced. We have a policy to provide all consumers with documentation from suppliers on the state, procedures, protocols, and historical data on sample handling and testing analysis on samples ordered from suppliers. In choosing samples to order, suppliers categorize the usage, handling, environment, and application of samples to properly supply samples to users. However, users expect information on sample handling, collection or harvesting, storage, management, shipment, and other logistical considerations that may affect sample quality and impact sample use. The Amazon-like storefront saves lives by sourcing samples from all bio-banks around the world. This is how it works: * Choose a supplier you trust. Find the sample you need. Select samples from search results and place an order. Payment systems by Amazon are reliable. Choose your shipper and method of delivery. Track your orders from multiple vendors. Query reports of all orders place by your staff. Rate the samples you ordered and view the ratings of your peers. * Market your Biospecimen and Data on the Open Biobank | biomaterial supply resource, tissue bank, material storage repository | nlx_144431 | SCR_005364 | SciCrunch Registry | Open Bio Bank | 2026-10-31 12:14:11 | 0 | |||||||||
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VisiGene Image Browser Resource Report Resource Website 50+ mentions |
VisiGene Image Browser (RRID:SCR_003341) | VisiGene | analysis service resource, data analysis service, data or information resource, data repository, database, image collection, image repository, production service resource, service resource, storage service resource | Virtual microscope for viewing in situ images that show where a gene is used in an organism, sometimes down to cellular resolution. The user can examine cell-by-cell as well as tissue-by-tissue expression patterns. Users can retrieve images that meet specific search criteria, then interactively zoom and scroll across the collection. Image set contributions are welcome. The following image collections are currently available for browsing: * High-quality high-resolution images of eight-week-old male mouse sagittal brain slices with reverse-complemented mRNA hybridization probes from the Allen Brain Atlas, courtesy of the Allen Institute for Brain Science * Mouse in situ images from the Jackson Lab Gene Expression Database (GXD) at MGI * Transcription factors in mouse embryos from the Mahoney Center for Neuro-Oncology * Mouse head and brain in situ images from NCBI''''s Gene Expression Nervous System Atlas (GENSAT) database * Xenopus laevis in situ images from the National Institute for Basic Biology (NIBB) XDB project | molecular neuroanatomy resource, midbrain, brain, in situ, gene, theiler stage, visualization, cellular resolution, mrna hybridization, in situ hybridization, male, nieuwkoop, faber stage, gene expression, embryonic mouse, adult mouse |
is related to: Gene Expression Database is related to: Allen Institute for Brain Science is related to: Gene Expression Nervous System Atlas has parent organization: University of California at Santa Cruz; California; USA |
PMID:18996895 PMID:17142222 |
Free, Freely available | nif-0000-00198 | SCR_003341 | SciCrunch Registry | 2026-10-31 12:13:23 | 58 | |||||||
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Roswell Park Comprehensive Cancer Center Biorepository and Laboratory Services Shared Resource BLS Core Facility Resource Report Resource Website |
Roswell Park Comprehensive Cancer Center Biorepository and Laboratory Services Shared Resource BLS Core Facility (RRID:SCR_028376) | access service resource, biospecimen repository, core facility, material storage repository, service resource, storage service resource | Core is comprehensive data and biospecimen bank (malignant and normal tissue and their derivatives, blood and bone marrow) for research along with a range of services that accompany biospecimens. Facilitates access to human tissue, blood and bone marrow for investigators with Institutional Review Board (IRB) approved protocols emphasizing translational research. Helps investigators to establish Biospecimen and Data Research (BDR) protocols and supports the submission of grants by providing feasibility analysis, cost estimates and letters of support. | ABRF, data and biospecimen bank, malignant and normal tissue, blood, bone marrow, |
is listed by: ABRF CoreMarketplace has parent organization: Roswell Park Comprehensive Cancer Center |
ABRF_5906 | https://https://coremarketplace.org/?FacilityID=5906&citation=1 | SCR_028376 | SciCrunch Registry | Biorepository & Laboratory Services Shared Resource (BLS) | 2026-10-31 12:24:49 | 0 | ||||||||
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ADA GENNID Study Resource Report Resource Website |
ADA GENNID Study (RRID:SCR_000527) | GENNID Study | biomaterial supply resource, material resource | The purpose of the American Diabetes Association (ADA), GENNID Study (Genetics of non-insulin dependent diabetes mellitus, NIDDM) is to establish a national database and cell repository consisting of information and genetic material from families with well-documented NIDDM. The GENNID Study will provide investigators with the information and samples necessary to conduct genetic linkage studies and locate the genes for NIDDM. Non-Hispanic white, Hispanic, African-American, and Japanese-American multiplex NIDDM families, with a minimum of one affected sib-pair, are being collected by the eight Harold Rifkin Family Acquisition Centers. Detailed family and medical histories are obtained from all participants. Family members with diabetes have fasting blood samples drawn, while nondiabetic family members have an oral glucose tolerance test and, when possible, insulin sensitivity and insulin secretion measurements by frequently sampled intravenous glucose tolerance testing or euglycemic insulin clamp. Lymphoblastoid cell lines are established for all participants. DNA samples and extensive phenotypic data are available from the American Diabetes Association's GENNID study (Genetics of NIDDM). GENNID has collected detailed family histories and a broad array of data on 170 large pedigrees, all of which contain at least one affected sib pair, with a total of 650 affected individuals and approximately 1,200 total subjects. Included are approximately 65 Caucasian, 60 Hispanic, 25 African American, and 20 Japanese American pedigrees. In addition, GENNID also contains DNA and data on 1,000 additional affected sib pairs in each of three groups, African American, Caucasian, and Hispanic. DNA and phenotypic data, including race, gender and age, are available for all members of the pedigrees. The data set includes multiple metabolic factors, including carbohydrate metabolism, lipid metabolism, and body size measures, as well as lifestyle variables obtained by questionnaire (e.g., employment, exercise, etc.). The GENNID resource is ideally suited for genetic linkage and association studies as well as SNP discovery and typing. Investigators interested in obtaining the DNA samples and/or data will need to submit a proposal to the Association that addresses the genetics of type 2 diabetes. | genetic linkage study, gene, caucasian, hispanic, african-american, japanese-american, phenotypic data, blood, ebv-transformed, lymphoblastoid cell line, dna, b-lymphocyte, non-insulin dependent diabetes mellitus, affected sibling, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Coriell Cell Repositories |
Non-insulin dependent diabetes mellitus, Affected Sibling | American Diabetes Association | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143803 | SCR_000527 | SciCrunch Registry | Genetics of NIDDM Study, American Diabetes Association GENNID Study, ADA Repository, ADA The GENNID Study: Genetics of Non-Insulin Dependent Diabetes, ADA Genetics of non-insulin dependent diabetes mellitus Study | 2026-10-31 12:20:58 | 0 | |||||
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scStudio Resource Report Resource Website |
scStudio (RRID:SCR_027618) | software resource, web application | Web-based application for comprehensive and modular scRNA-seq data analysis. to easily retrieve datasets from repositories housing most publicly available single-cell data. Future expansions of scStudio will integrate additional databases, such as the Human Cell Atlas. | Single-cell RNA sequencing, scRNA-seq data analysis, retrieve datasets from repositories, single-cell data, | European Union Horizon | DOI:10.1101/2025.04.17.649161 | Free, Freely available | https://compbio.imm.medicina.ulisboa.pt/app/scStudio, | SCR_027618 | SciCrunch Registry | 2026-10-31 12:24:35 | 0 | ||||||||
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Barth Syndrome Biorepository Resource Report Resource Website |
Barth Syndrome Biorepository (RRID:SCR_004775) | BRR | biomaterial supply resource, material resource, tissue bank | The Barth Syndrome Registry and Repository (BRR) at the University of Florida and Children''s Hospital Boston was created to provide additional information about this rare disorder. By collecting information directly from families and abstracting medical information from patient records, we hope to build a large anonymized database that is useful for answering scientific research questions and that is a source of medical information. Additionally, we are collecting blood samples for DNA isolation and storage and for the development of special cell lines. These tools will allow researchers to better understand the cellular and genetic nature of this disease and how these abnormalities may impact the clinical variability of Barth syndrome patients. Currently available data from the Barth Syndrome Registry and Repository includes self-reported data. This includes basic demographics, age at diagnosis of Barth Syndrome, reason for diagnosis, family history; symptoms, presence or absence of a history of cardiomyopathy, history regarding hospitalizations, cardiac transplant or listing for transplant, presence or absence of a history of neutropenia; history of infections, medical therapy and basic developmental history. We are in the process of abstracting medical data to build a more complete medical database and may be able to provide additional data with a specific request. Currently the DNA bank has data from 65 patients, genomic DNA from 50 patients, lymphoblast lines from 41 patients, fibroblast lines from 3 patients, and myocardium/autopsy from 3 patients. However, this is increasing as new patients enroll in the Registry. Please contact us with questions and specific requests about data or specimens. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Barth Syndrome Foundation has parent organization: University of Florida; Florida; USA |
Barth syndrome | nlx_77178 | SCR_004775 | SciCrunch Registry | Barth Syndrome Registry and Repository | 2026-10-31 12:20:06 | 0 | ||||||||
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Atlas of Living Australia Resource Report Resource Website 100+ mentions |
Atlas of Living Australia (RRID:SCR_006467) | ALA | data or information resource, database | Online repository of information about Australian plants, animals, and fungi. Development started in 2006. The Commonwealth Scientific and Industrial Research Organisation is organisation significantly involved in development of ALA. | data sharing, biodiversity, image, photograph, dna, conservation, natural resource, literature, nomenclature, australia, morphology, life stage, stage, behavior, reproduction, habitat, genetic, region, species, portal, data set, data analysis service, metadata standard, web service, image collection, FASEB list |
is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: CSIRO has parent organization: GBIF - Global Biodiversity Information Facility |
Creative Commons Attribution License, v3 Australia License, Provider content may be covered by other Terms of Use, Http://www.ala.org.au/about-the-atlas/terms-of-use/ | nlx_152016, DOI:10.26197, DOI:10.25504/FAIRsharing.2f66da, r3d100010918, DOI:10.17616/R3VG9S | https://doi.org/10.26197, https://dx.doi.org/10.26197, http://doi.org/10.17616/R3VG9S, https://fairsharing.org/10.25504/FAIRsharing.2f66da, https://doi.org/10.17616/R3VG9S | SCR_006467 | SciCrunch Registry | 2026-10-31 12:20:12 | 174 | |||||||
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National Chimpanzee Brain Resource Resource Report Resource Website 10+ mentions |
National Chimpanzee Brain Resource (RRID:SCR_019183) | NCBR | atlas, data or information resource, data repository, portal, service resource, storage service resource | Collection and distribution of chimpanzee neuroimaging data and postmortem brain tissue. Portal to access chimpanzee brain atlas tools, data repository, bibliography of publications, educational information, and links to other chimpanzee brain resources and datasets on the Internet. Serves as repository for in vivo structural MRI scans of chimpanzee brains, in vivo and postmortem diffusion tensor images (DTI), as well as postmortem fixed and frozen brain specimens. | Chimpanzee, Pan Troglodytes, Brain, MRI, DTI, chimpanzee neuroimaging data, postmortem brain tissue, chimpanzee brain atlas |
is related to: George Washington University; Washington D.C.; USA is related to: University of Texas MD Anderson Cancer Center is related to: Yerkes National Primate Research Center |
National Institute of Neurological Disorders and Stroke | Free, Freely available | SCR_019183 | SciCrunch Registry | 2026-10-31 12:17:13 | 36 | ||||||||
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BioDare2 Resource Report Resource Website 50+ mentions |
BioDare2 (RRID:SCR_027193) | analysis service resource, data analysis service, data or information resource, data processing software, data repository, data set, data visualization software, numeric dataset, production service resource, service resource, software application, software resource, storage service resource, time sampled measurement data set | Data analysis resource and repository for biological data related to circadian rhythms, sharing public data from over 10,000 experiments (in 2025). The main features of BioDare2 are: fast analysis of rhythmic data (rhythm detection and period, phase, amplitude), timeseries processing, attractive visualizations, simple data description, data sharing with permalinks, easy data uploads and a modern UI. | circadian rhythms data, biological data related to circadian rhythms, analysis of rhythmic data, timeseries processing, attractive visualizations, simple data description, data sharing with permalinks, | EU European Commission FP7 Collaborative Project TiMet (award 245143); UKRI-BBSRC BB/M018040/1; UKRI-BBSRC BB/Y006194/1 |
PMID:34674164 | Restricted | SCR_027193 | SciCrunch Registry | 2026-10-31 12:24:19 | 72 | |||||||||
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Genomic Literature Knowledge Base Resource Report Resource Website |
Genomic Literature Knowledge Base (RRID:SCR_026592) | GLKB | data or information resource, knowledge base | Resource that integrates biomedical terms and biomedical relationships. This collection is curated from PubMed abstracts and biomedical repositories, offering unparalleled wealth of knowledge for researchers and practitioners in the field. The database is coupled with RESTful APIs and user-friendly web interface. | PubMed abstracts, biomedical repositories, biomedical terms, biomedical relationships, | is related to: University of Michigan; Ann Arbor; USA | DOI:10.1101/2024.09.22.614323 | Free, Freely available | SCR_026592 | SciCrunch Registry | 2026-10-31 12:24:08 | 0 | ||||||||
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FunGene Resource Report Resource Website 50+ mentions |
FunGene (RRID:SCR_018749) | analysis service resource, data or information resource, data repository, database, production service resource, service resource, software resource, software toolkit, storage service resource | Functional gene pipeline and repository. Functional gene repository provides collections of genes in interactive platform, while functional gene pipeline offers suite of tools for functional gene amplicon processing and analysis. Together they enable key steps in functional gene based microbial community analysis, from target selection and primer analysis to amplicon processing and ecological discovery. | Gene processing, microbial ecology, functional genes, amplification primers, phylogeny, biogeochemical cycles, amplicon analysis, ecological discovery, microbial community | has parent organization: Michigan State University; Michigan; USA | NIDDK UH3 DK083993; NIEHS ; NIEHS P42 ES004911; Office of Science U.S. Department of Energy ; USDA National Institute of Food and Agriculture |
PMID:24101916 | Free, Freely available | SCR_018749 | SciCrunch Registry | FunGene Pipeline | 2026-10-31 12:17:07 | 58 | |||||||
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NeuroBridge Resource Report Resource Website 1+ mentions |
NeuroBridge (RRID:SCR_023703) | data or information resource, portal, project portal | Platform for data discovery to enhance the reuse of clinical neuroscience and neuroimaging data. Provides NeuroBridge ontology, and combines machine learning with ontology based search of both neuroimaging repositories like XNAT databases and open access full text journals such as PubMed Central. Connects researchers with potential neuroimaging data, by searching text of papers describing neuroimaging studies that contain information on neuroimaging data. | NeuroBridge ontology, ontology based search, searching text, data discovery, clinical neuroscience data, neuroimaging data, data reuse, | Free, Freely available | https://github.com/NeuroBridge | SCR_023703 | SciCrunch Registry | 2026-10-31 12:19:32 | 1 | ||||||||||
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DataUp Resource Report Resource Website 1+ mentions |
DataUp (RRID:SCR_006905) | DataUp | data management software, service resource, software application, software resource | An open source tool to help researchers document, manage, and archive their tabular data that integrates with Microsoft Excel. The tool will parse .xlsx or .csv file to detect the presence of potential issues that do not comply with data management best practices, assign a unique identifier to a data set and deposit it within the DataONE repository system. | data sharing, spreadsheet, data management, data citation, data archiving, metadata, unique identifier, standard, best practice, data repository, windows, microsoft excel |
is used by: DataONE is listed by: FORCE11 has parent organization: California Digital Library |
Gordon and Betty Moore Foundation ; Microsoft Research Connections |
Open unspecified license, But terms of use are unclear | nlx_151967 | http://www.force11.org/node/4664 | SCR_006905 | SciCrunch Registry | 2026-10-31 12:14:37 | 1 | ||||||
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FruitDBase Resource Report Resource Website |
FruitDBase (RRID:SCR_029077) | atlas, data or information resource, database, expression atlas | Curated, open-access repository integrating publicly available transcriptomic data for Prunus dulcis and related stone-fruit species. Transcriptomic resource for almonds (Prunus dulcis). | Bioinformatic, Transcriptomic, Plants, Almond, Prunus | European Commission – NextGenerationEU Momentum CSIC Programme: Develop Your Digital Talent | Free, Freely available | SCR_029077 | SciCrunch Registry | 2026-10-31 12:25:08 | 0 | ||||||||||
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GlyGen Resource Report Resource Website 10+ mentions |
GlyGen (RRID:SCR_023438) | data or information resource, portal, project portal | Data integration and dissemination project for carbohydrate and glycoconjugate related data. Computational and informatics resources for glycoscience. Portal provides user-friendly interface that facilitates exploration of glycoscience data from diverse international bioinformatics resources, including National Center for Biotechnology Information (NCBI), UniProt, Protein Data Bank (PDB), UniCarbKB, and GlyTouCan glycan structure repository. Retrieves information from data sources and integrates and harmonizes this data. Includes knowledge about molecular, biophysical and functional properties of glycans, genes, proteins and lipids organized in pathways and ontologies, plus data related to mutation and expression. | Gly-glycobiology Gen-information, glycobiology, glycans molecular properties, glycans biophysical properties, glycans functional properties properties, glycans, genes, proteins, lipids, pathways and ontologies, data, mutation and expression data, carbohydrate and glycoconjugate related data, | NIGMS 1U01GM125267; NIGMS R24 GM146616 |
PMID:31616925 PMID:32324859 |
Free, Freely available | SCR_023438 | SciCrunch Registry | GlyGen Portal | 2026-10-31 12:19:30 | 20 | ||||||||
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LabWorm Resource Report Resource Website |
LabWorm (RRID:SCR_014079) | LW | catalog, data or information resource, database, portal | A comprehensive index for locating and compiling bioinformatics and online science tools. Users can browse, rate, share and save various tools listed in the LabWorm repository. Resources contain a short description, a list of related sites, comments, a list of users who have shared and rated the resource, and the main site URL. Resources may be saved to a personal toolbox collection. User news feeds can be customized to include new scientific literature from journals of choice. Users who want to utilize LabWorm tools to improve their own website can access the alternate Developer site. | bioinformatics repository, collaboration, toolbox, catalog, online tool |
lists: PubMed lists: DAVID lists: Ensembl lists: UniProt lists: RCSB PDB Software Tools lists: Kyoto Encyclopedia of Genes and Genomes Expression Database lists: BioCyc lists: CAZy lists: bioRxiv lists: Genolevures |
Public, Free | https://labworm.com/developers | SCR_014079 | SciCrunch Registry | The LabWORM | 2026-10-31 12:18:32 | 0 | |||||||
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BioModels Ontology Resource Report Resource Website |
BioModels Ontology (RRID:SCR_010125) | BIOMODELS | controlled vocabulary, data or information resource, ontology | OWL Representation of the models in the BioModels repository. | owl | is listed by: BioPortal | nlx_157326 | https://code.google.com/p/sbmlharvester/ | SCR_010125 | SciCrunch Registry | 2026-10-31 12:15:01 | 0 | ||||||||
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Neuron Registry Curator Interface Resource Report Resource Website 1+ mentions |
Neuron Registry Curator Interface (RRID:SCR_000094) | NRCI | data or information resource, data repository, service resource, storage service resource | Repository of neuron types characterized by machine-readable part-relation-value triple-based neuron properties. A Curator Interface facilitates the direct knowledge transfer of information from the participating neuroscientist for entry into the Neuron Registry. | neuron, registry, neuron property, data repository, knowledge environment, database, registry, neuroinformatics |
is related to: Neuron Registry Annotated Corpus is related to: Program on Ontologies of Neural Structures has parent organization: George Mason University; Virginia; USA has parent organization: International Neuroinformatics Coordinating Facility |
International Neuroinformatics Coordinating Facility ; under the Program on Ontologies of Neural Structures PONS |
Restricted | nif-0000-00540 | http://incfnrci.appspot.com | SCR_000094 | SciCrunch Registry | INCF Neuron Registry | 2026-10-31 12:12:33 | 2 | |||||
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Access-ScienceJobs.co.uk Resource Report Resource Website |
Access-ScienceJobs.co.uk (RRID:SCR_005157) | Access-ScienceJobs.co.uk | data or information resource, job resource, narrative resource | A leading online job board for scientists, Access-ScienceJobs.co.uk was initially launched in July 2005 from an existing scientific recruitment platform with the sole aim to provide employers a more cost-effective recruitment advertising solution, and for jobseekers a one-stop portal for finding their ideal scientific position. For Jobseekers We work with some of the UK''s leading recruitment agencies and direct employers to bring you an extensive selection of scientific jobs across all related industry sectors. Start your job search here or find a direct employer or agency in our companies a-z directory. Don''t miss our articles section, with useful careers, reviews and news articles written by respected recruitment and cv specialists. * Apply Online - fast, securely & professionally * Save your Job Alerts and manage them easily within your control panel * Create an effective CV Profile and let recruiters find you For Recruiters Looking to fill a job vacancy? We attract a wide range of Scientists within the UK through various forms of job distributions, networks and media coverage. * Post your Science related Jobs to our network of qualified Scientists * Edit, Repost & Expire your Job postings, anytime * Find professional Science Candidates when you CV Search online * Post your Career & News Articles to enhance your Employer brand * List your Profile for FREE in our Companies A-Z Directory | job seeker, employer, job posting, career, science, database, data storage repository |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144183 | SCR_005157 | SciCrunch Registry | 2026-10-31 12:18:33 | 0 |
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