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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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sitplus Resource Report Resource Website |
sitplus (RRID:SCR_024344) | software application, software resource | Software framework to provide ludic-therapeutic activities for people with disabilities.Offers new forms of interaction based on computer vision, voice and other peripherals to produce result in form of image and sound. Used for continuous and remote interaction, attainable to majority of people with cognitive, sensory and physical disabilities. | interaction based on computer vision, voice, produce result in form of image and sound, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/sitplus/ | SCR_024344 | SITPLUS | 2026-08-09 09:08:26 | 0 | ||||||||
|
AI-FANN Resource Report Resource Website |
AI-FANN (RRID:SCR_024060) | software application, software resource | Software Perl wrapper for the Fast Artificial Neural Network library | Perl wrapper, Fast Artificial Neural Network library, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libai-fann-perl/ | SCR_024060 | AI-FANN - Perl wrapper for the Fast Artificial Neural Network library, libai-fann-perl | 2026-08-09 09:08:22 | 0 | ||||||||
|
Bio-Coordinate Resource Report Resource Website |
Bio-Coordinate (RRID:SCR_024063) | software application, software resource | Software application used for working with various biological coordinate systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples. | biological coordinate systems, | is listed by: Debian | https://sources.debian.org/src/libbio-coordinate-perl/ | SCR_024063 | Bio-Coordinate - Modules for working with biological coordinates, libbio-coordinate-perl | 2026-08-09 09:08:22 | 0 | |||||||||
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Artinis Medical Systems Oxysoft Resource Report Resource Website 1+ mentions |
Artinis Medical Systems Oxysoft (RRID:SCR_024666) | software application, software resource | Software application used to collect, store, view, and analyse all necessary data from the Brite Family devices, PortaMon, PortaLite, OctaMon and OxyMon developed by Artinis Medical Systems and highly customisable to individual requirements. | Artinis Medical Systemscollect, store, view, analyse, Brite Family, PortaMon, PortaLite, OxyMon, devices data, | Restricted | SCR_024666 | 2026-08-09 09:08:31 | 3 | |||||||||||
|
Tecan i-Control Resource Report Resource Website 1+ mentions |
Tecan i-Control (RRID:SCR_024562) | software application, software resource | Microplate reader software as user friendly interface for control of Tecan's Infinite series of microplate readers designed for professional use. | Tecan, Infinite plate reader family system software, | Restricted | https://bif.wisc.edu/wp-content/uploads/sites/389/2017/11/i-control_Manual.pdf | SCR_024562 | i-Control, Tecan i-Control software | 2026-08-09 09:08:57 | 5 | |||||||||
|
StereoCell v2.0 Resource Report Resource Website 1+ mentions |
StereoCell v2.0 (RRID:SCR_024438) | software application, software resource | Enhanced application on generating single cell gene expression profile for high resolution spatial transcriptomics. Registers spatial gene expression map and cell membrane/wall staining image with nuclei staining image as intermediary, thus cell membrane/wall outlines can be directly segmented from cell membrane/wall staining image without correcting nuclei boundaries. | Register spatial gene expression map, register image, generating single cell gene expression profile, high resolution spatial transcriptomics, | Free, Available for download, Freely available | SCR_024438 | StereoCell | 2026-08-09 09:08:55 | 1 | ||||||||||
|
NCBI accession download script Resource Report Resource Website 1000+ mentions |
NCBI accession download script (RRID:SCR_024130) | software application, software resource | Software tool as partner script to the popular ncbi-genome-download script. Allows to download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API. | download sequences, GenBank/RefSeq, accession through NCBI ENTREZ API, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/ncbi-acc-download/ | SCR_024130 | ncbi-acc-download | 2026-08-09 09:08:23 | 1179 | ||||||||
|
Lucy Resource Report Resource Website |
Lucy (RRID:SCR_024099) | software application, software resource | Software tool to clean sequence data from automated DNA sequencers prior to sequence assembly and other downstream uses. | clean sequence data from automated DNA sequencers, Sanger sequencing, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_14823 | https://sources.debian.org/src/lucy/ | SCR_024099 | lucy, Lucy DNA sequence quality and vector trimming tool | 2026-08-09 09:08:22 | 0 | |||||||
|
tacg Resource Report Resource Website |
tacg (RRID:SCR_024374) | software application, software resource | Software tool as command line program that performs many of the common routines in pattern matching in biological strings. It was originally designed for restriction enzyme analysis and while that still forms core of the program, it has been expanded to fill more roles, sort of 'grep' for DNA. | pattern matching in biological strings, restriction enzyme analysis, | is listed by: Debian | PMID:11882250 | Free, Available for download, Freely available, | https://sources.debian.org/src/tacg/ | SCR_024374 | 2026-08-09 09:09:03 | 0 | ||||||||
|
WHONET Resource Report Resource Website 10+ mentions |
WHONET (RRID:SCR_024495) | software application, software resource | Software free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts. WHONET, available in 44 languages, supports local, national, regional, and global surveillance efforts in over 2,300 hospital, public health, animal health, and food laboratories in over 130 countries worldwide. | management and analysis of microbiology laboratory data | is listed by: SoftCite | Free, Available for download, Freely available | SCR_024495 | 2026-08-09 09:09:04 | 30 | ||||||||||
|
VelvetOptimiser Resource Report Resource Website 50+ mentions |
VelvetOptimiser (RRID:SCR_024376) | software application, software resource | Software tool to run as wrapper script for Velvet assembler and to assist with optimising the assembly.Used to search supplied hash value range for optimum, estimates expected coverage and then searches for optimum coverage cutoff. Estimates insert lengths for paired end libraries. Can optimise assemblies by default optimisation condition or by user supplied one. It outputs the results to subdirectory and records all its operations in logfile. | wrapper script, Velvet assembler, optimising assembly, optimum search, search supplied hash value range, optimum coverage cutoff, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_14601 | https://sources.debian.org/src/velvetoptimiser/ https://sources.debian.org/src/vsearch/ | SCR_024376 | velvetoptimiser, perl-velvetoptimiser | 2026-08-09 09:08:27 | 60 | |||||||
|
PyEGA Resource Report Resource Website 1+ mentions |
PyEGA (RRID:SCR_024654) | software application, software resource | Software Python tool for viewing and downloading files from authorized European Genome-phenome Archive datasets. Python based EGA download client. | EGA download client, viewing and downloading files, European Genome-phenome Archive datasets, | Free, Available for download, Freely available | https://github.com/blachlylab/pyega | SCR_024654 | Python European Genome-phenome Archive | 2026-08-09 09:08:58 | 4 | |||||||||
|
VisIt Resource Report Resource Website |
VisIt (RRID:SCR_024370) | software application, software resource | Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations. | generate visualizations, animation, analysis, save resulting images and animations for presentations, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/visit/ | SCR_024370 | visit | 2026-08-09 09:08:27 | 0 | ||||||||
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MView Resource Report Resource Website 1+ mentions |
MView (RRID:SCR_024129) | software application, software resource | Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. | database search, multiple alignment viewer, | is listed by: Debian | PMID:9632837 | Free, Available for download, Freely available, | OMICS_15907 | https://sources.debian.org/src/mview/ | SCR_024129 | mview | 2026-08-09 09:08:47 | 5 | ||||||
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ImageTwin Resource Report Resource Website 1+ mentions |
ImageTwin (RRID:SCR_024543) | software application, software resource | AI based software for detecting integrity issues in figures of scientific articles. Used for detecting integrity issues in life science articles. Detects inappropriate manipulation and duplication in many figure types, including blots, microscopy images, and light photography. | scientific literature manipulated images check, detect inappropriate manipulation and duplication, blots check, microscopy images check, light photography check, manipulated images, | Restricted | SCR_024543 | 2026-08-09 09:08:30 | 3 | |||||||||||
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Progress and Health Foundation; Seville; Spain Resource Report Resource Website |
Progress and Health Foundation; Seville; Spain (RRID:SCR_000276) | FPS | training resource, group | An organization that supports the public health system in Andalusia, Spain through three main activities: research and innovation in health, technologies line information and communication, and training and evaluation of professional skills. It also provides management support to the Health Quality Agency of Andalusia, which is the driving entity of the Andalusian Quality Model. Resource is in Spanish. | public health, andalusia, spain, research, innovation, communication, training, technology, health |
is related to: PRECISESADS is parent organization of: PRECISESADS is parent organization of: Centre for Genomics and Oncological Research |
nlx_158210 | http://www.juntadeandalucia.es/fundacionprogresoysalud/english.html | SCR_000276 | Fundacion Publica Andaluza Progreso y Salud, Fundacion Progreso y Salud, Fundación Progreso y Salud, Progress and Health Foundation | 2026-08-09 09:02:56 | 0 | |||||||
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3D ImageJ Suite Resource Report Resource Website 1+ mentions |
3D ImageJ Suite (RRID:SCR_024534) | software application, software resource | Software suite provides plugins to enhance 3D capabilities of ImageJ. | enhance 3D capabilities of ImageJ, | works with: ImageJ | Free, Freely available | SCR_024534 | 2026-08-09 09:08:57 | 1 | ||||||||||
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Sequence Search and Alignment by Hashing Algorithm Resource Report Resource Website 1+ mentions |
Sequence Search and Alignment by Hashing Algorithm (RRID:SCR_000544) | SSAHA2 | source code, software resource | A program designed for the efficient mapping of sequence reads onto genomic references. The software is capable of reading most sequencing platforms and giving a range of outputs are supported. | sequence, genomic, analysis, search, alignment, algorithm, mapping, bio.tools |
is listed by: OMICtools is listed by: bio.tools is related to: SMALT has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11591649 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ssaha2, OMICS_00690, nlx_93831 | https://bio.tools/ssaha2 | SCR_000544 | ssaha2, ssaha, Sequence Search and Alignment by Hashing Algorithm | 2026-08-09 09:02:59 | 6 | |||||
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BioThings API Resource Report Resource Website |
BioThings API (RRID:SCR_024539) | software application, software resource | FAIR API ecosystem for inter-connected biomedical knowledge. Provides three components in its API development ecosystem: family of high-performance APIs for accessing up-to-date annotations for genes, genetic variants, chemicals and drugs; provides BioThings API packages its API-development best practice into reusable Software Development Kit to help other bioinformaticians to build same high-quality API to distribute their own specific knowledge; BioThings API provides platform to foster findability and interoperability across community developed biomedical APIs. Provides tools for authoring API metadata following community supported OpenAPI standard and hosts standardized interactive API documentation. Defines set of OpenAPI extensions to provide biomedical specific semantic annotations. | FAIR API ecosystem, inter-connected biomedical knowledge, biomedical entity type, biological knowledge space, biomedical APIs, Software Development Kit, authoring API metadata tools, OpenAPI extensions, | Free, Freely available | SCR_024539 | 2026-08-09 09:09:04 | 0 | |||||||||||
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rambo-k Resource Report Resource Website |
rambo-k (RRID:SCR_024198) | software application, software resource | Software tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. | removal of background sequences, Next Generation Sequencing data, | is listed by: Debian | PMID:26379285 | Free, Available for download, Freely available, | OMICS_10013 | https://sources.debian.org/src/rambo-k/ | SCR_024198 | 2026-08-09 09:08:24 | 0 |
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