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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
A raster layer of global vegetation types, in Chinese. Please note the website is not functional from the US.
Proper citation: Chinese National Earth System Science Data Center (RRID:SCR_025658) Copy
Web app for global DEM data with spatial resolution of about 30m. This data can be used for mapping and spatial modelling in GIS or other computer programs.
Proper citation: Chinese Geospatial Data Cloud (RRID:SCR_025659) Copy
Public archive of raw sequence data in National Genomics Data Center as part of the China National Center for Bioinformation. GSA accepts worldwide data submissions, performs data curation and quality control for all submitted data. Provides data storage and sharing services.
Proper citation: Chinese Genome Sequence Archive (RRID:SCR_025826) Copy
Publicly accessible 3D data repository where subject experts, educators, and general public can find, view, interact with, and download 3D and 2D media representing physical objects important to the world’s natural history, cultural heritage, and scientific collections. Media data are contributed by a community that includes museums, institutions, researchers, scholars, and other subject experts who use MorphoSource to archive data, share findings, and increase scholarly impact. Contributed media represent both biological objects such as fossils and representatives of living species, as well as artifacts and objects created by humans that are critical to our shared cultural heritage.
Proper citation: MorphoSource (RRID:SCR_025654) Copy
https://discover.nci.nih.gov/cellminer/
Database and query tool designed for cancer research community to facilitate integration and study of molecular and pharmacological data for the NCI-60 cancerous cell lines. The NCI-60, panel of 60 diverse human cancer cell lines used by the Developmental Therapeutics Program of the U.S. National Cancer Institute to screen over 100,000 chemical compounds and natural products since 1990.
Proper citation: CellMiner (RRID:SCR_025648) Copy
https://subtiwiki.uni-goettingen.de/
Comprehensive database about Gram-positive model bacterium Bacillus subtilis. Provides curated information about its genes and proteins, as well as intricate protein–protein interactions, regulatory elements, expression data and metabolic pathways.
Proper citation: SubtiWiki (RRID:SCR_025748) Copy
https://sipi.usc.edu/database/
Collection of digitized images.Maintained primarily to support research in image processing, image analysis, and machine vision.
Proper citation: USC-SIPI Image Database (RRID:SCR_025683) Copy
Openly licensed platform to work with RNA-RNA and protein-RNA interactions with software and pipelines to deeply mining thousands of high-throughput sequencing data of RNA-RNA interactome, CLIP-seq and degradome sequencing.
Proper citation: Encyclopedia of RNA Interactomes (RRID:SCR_025686) Copy
https://www.bioconductor.org/packages/devel/bioc/html/EnrichDO.html
Software R package as global weighted model for disease ontology enrichment analysis. Used for annotating and enrichment analysis with disease ontology.
Proper citation: EnrichDO (RRID:SCR_025840) Copy
Collection of literature and in-house MSn spectra data for research on plant metabolomics.
Proper citation: ReSpect for Phytochemicals (RRID:SCR_025688) Copy
https://github.com/Incpink-Liu/DNA-storage-R_plus
Software provides direct mapping refence between expanded molecular alphabet and N-nary digits in the absence of high-performance transcoding algorithm at present. Transcoding scheme for DNA data storage based on expanded molecular alphabet.
Proper citation: R plus (RRID:SCR_026005) Copy
Database with products that can serve as alternative for basement membrane extracts (BMEs) for in vitro applications. BME-free database is publicly available and is part of 3Rs Research Tools Programme, which is managed and hosted by 3Rs Centre Utrecht.
Proper citation: Basement Membrane Extract (BME)-free Database (RRID:SCR_026058) Copy
https://www.hpa.gov.tw/Pages/TopicList.aspx?nodeid=649
Provides comprehensive national registry that systematically records all live births in Taiwan. It captures essential data on maternal and infant health, including maternal demographics, prenatal care, gestational age, birth weight, delivery method, and congenital anomalies. Established to facilitate public health monitoring and research, the TBRS enables studies on birth trends and outcomes, such as preterm birth and low birth weight, and provides a valuable resource for investigating the impacts of maternal health, environmental factors, and healthcare access on neonatal outcomes.TBRS database is instrumental in informing maternal and child health policies in Taiwan.
Proper citation: Taiwan Birth Reporting System Database (RRID:SCR_026047) Copy
https://dep.mohw.gov.tw/DOS/cp-5119-59201-113.html
Provides comprehensive dataset based on National Health Insurance program, which has covered over 99% of Taiwan's population since its launch in 1995. Database includes anonymized data on outpatient and inpatient visits, prescriptions, surgeries, diagnostics, and other medical information, ensuring individual privacy protection. NHI database is extensively utilized in fields such as public health, epidemiology, drug safety, and chronic disease monitoring, providing critical insights for research on major health conditions like cancer and cardiovascular diseases. Researchers use the NHIRD for long-term follow-up studies, treatment outcome analyses, and identifying disease risk factors, making it a valuable resource for healthcare policy and medical decision-making.
Proper citation: Taiwan National Health Insurance Database (RRID:SCR_026048) Copy
https://friedmanlab.weizmann.ac.il/McPAS-TCR/
Manually curated database of T cell receptor sequences associated with various pathologic conditions including pathogen infections, cancer and autoimmunity and their respective antigens in humans and in mice. Links TCR sequences to their target antigen and/or to the organ with which they are associated and subsequent pathologies. Database can be searched by source organism, disease, tissue, T cell type, antigen sequence, MHC class, etc.
Proper citation: McPAS-TCR (RRID:SCR_026024) Copy
Provides comprehensive curated information on bacteria in human mouth and aerodigestive tract, including pharynx, nasal passages, sinuses and esophagus. eHOMD taxonomy provides provisional naming scheme for currently unnamed taxa, based on 16S rRNA sequence phylogeny, so that strain, clone and probe data from any laboratory can be directly linked to a stably named reference scheme.
Proper citation: expanded Human Oral Microbiome Database (RRID:SCR_025964) Copy
https://www.selenium.dev/documentation/webdriver/
Software remote control interface that enables introspection and control of user agents. Provides platform- and language-neutral wire protocol as way for out-of-process programs to remotely instruct behavior of web browsers.
Proper citation: Selenium WebDriver (RRID:SCR_025969) Copy
Registered charity and company limited by guarantee with mission to conserve birds, their habitats and global biodiversity, working with people toward sustainability in the use of natural resources. Registered in England. Provides bird species range map.
Proper citation: BirdLife International (RRID:SCR_026243) Copy
https://www.protectedplanet.net/
Provides data on protected areas and other effective area-based conservation measures, updated monthly with submissions from governments, non-governmental organizations, landowners and communities.Through Protected Planet website, users can explore World Database on Protected Areas (WDPA), World Database on OECMs, Global Database on Protected Area Management Effectiveness (GD-PAME), and associated information.
Proper citation: Protected Planet (RRID:SCR_026240) Copy
https://github.com/j-rub/scVital
Software tool to embed scRNA-seq data into species-agnostic latent space to overcome batch effect and identify cell states shared between species. Deep learning algorithm for cross-species integration of scRNA-seq data.
Proper citation: scVital (RRID:SCR_026215) Copy
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