Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
EVOKER Resource Report Resource Website 1+ mentions |
EVOKER (RRID:SCR_009145) | EVOKER | software application, software resource | A graphical tool for visualizing genotype intensity data in order to assess genotype calls as part of quality control procedures for genome-wide association studies. It provides a solution to the computational and storage problems related to being able to work with the huge volumes of data generated by such projects by implementing a compact, binary format that allows rapid access to data, even with hundreds of thousands of observations. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, perl | is listed by: Genetic Analysis Software | nlx_154305 | SCR_009145 | 2026-08-09 09:04:57 | 8 | |||||||||
|
CCREL Resource Report Resource Website |
CCREL (RRID:SCR_009142) | CCREL | software application, software resource | Software program for case-control genetic analysis that takes relatedness between individuals into account. It will perform single-marker and haplotypic tests, however it will only work with SNP or other biallelic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, perl, c, unix, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:ccrel, nlx_154261 | https://bio.tools/ccrel | SCR_009142 | Case-Control association analysis with RELlated individuals | 2026-08-09 09:04:57 | 0 | |||||||
|
alpha helix coordinate frame simulation Resource Report Resource Website 1+ mentions |
alpha helix coordinate frame simulation (RRID:SCR_019320) | source code, software resource | Source code for alpha-helix simulation framework written in Matlab. Specifically tested on Talin-1 Rod Domain. | talin-1 (human), MATLAB, alpha-helix, simulation framework | is related to: MATLAB | Free, Available for download, Freely available | SCR_019320 | alpha-helix-coordinate-frame-simulation, alpha-helix coordinate frame simulation framework | 2026-08-09 09:07:51 | 1 | |||||||||
|
linear actuator Resource Report Resource Website |
linear actuator (RRID:SCR_021613) | source code, software resource | Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system. | Pearce Lab Syringe Pump, OpenBehavior |
is listed by: OpenBehavior is related to: Pearce Lab Syringe Pump project |
DOI:10.1371/journal.pone.0107216 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/syringe-pump/ | SCR_021613 | linear-actuator | 2026-08-09 09:08:11 | 0 | |||||||
|
Rodent Operant Bucket Resource Report Resource Website |
Rodent Operant Bucket (RRID:SCR_021610) | source code, software resource | Software tool as ROBucket source code. | ROBucket, OpenBehavior |
is listed by: OpenBehavior is related to: Rodent Operant Bucket project |
DOI:10.3758/s13428-015-0603-2 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/robucket/ | SCR_021610 | 2026-08-09 09:08:02 | 0 | ||||||||
|
chendoscope Resource Report Resource Website |
chendoscope (RRID:SCR_021616) | source code, software resource | Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems. | Acquisition software, CHEndoscope Ximea USB camera, OpenBehavior |
is listed by: OpenBehavior is related to: CHEndoscope |
DOI:10.1002/cpns.51 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/chendoscope/ | SCR_021616 | 2026-08-09 09:08:02 | 0 | ||||||||
|
AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | source code, software resource | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-08-09 09:08:12 | 0 | ||||||||
|
Meta-Prism Resource Report Resource Website 1+ mentions |
Meta-Prism (RRID:SCR_021836) | source code, software resource | Software tool as microbial community sample search method based on smart pair wise sample comparison without compromising accuracy. Used as microbial communities similarites calculation and comparison tool. | microbial community sample search, sample comparison, microbial communities similarites calculation | Free, Available for download, Freely available | SCR_021836 | Meta-Prism 2.0 | 2026-08-09 09:07:43 | 3 | ||||||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | source code, software resource | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-08-09 09:08:11 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | source code, software resource | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-08-09 09:08:09 | 0 | ||||||||
|
naturalsounds analysis Resource Report Resource Website |
naturalsounds analysis (RRID:SCR_021793) | source code, software resource | Software tool as source code for analyzing functional ultrasound data. | analyzing functional ultrasound data | Free, Available for download, Freely available | https://zenodo.org/record/5493682#.YYCTbp7MJPY | SCR_021793 | naturalsounds_analysis | 2026-08-09 09:07:42 | 0 | |||||||||
|
flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | source code, software resource | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-08-09 09:08:08 | 1 | ||||||||
|
sepsis3-amsterdamumcdb Resource Report Resource Website 1+ mentions |
sepsis3-amsterdamumcdb (RRID:SCR_022042) | source code, software resource | Repository contains files for implementing the Sepsis-3 definition in the freely-accessible Amsterdam University Medical Centers Database. | Sepsis-3 criteria, Amsterdam University Medical Centers Database | Restricted | SCR_022042 | Sepsis-3 in AmsterdamUMCdb | 2026-08-09 09:08:09 | 2 | ||||||||||
|
pyOS-5 Resource Report Resource Website |
pyOS-5 (RRID:SCR_022336) | source code, software resource | Operant Box code | OpenBehavior, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 project |
DOI:10.1038/s41598-021-01717-1 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pyos-5/ | SCR_022336 | 2026-08-09 09:08:21 | 0 | ||||||||
|
HAPAR Resource Report Resource Website 1+ mentions |
HAPAR (RRID:SCR_009218) | HAPAR | software application, software resource | Software application to infer haplotype from genotype data. It uses the parsimony principle, i.e. try to find the minimum number of haplotypes that can reconstruct the input genotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window, unix, solaris | is listed by: Genetic Analysis Software | nlx_154373 | SCR_009218 | HAplotype inference by PARsimony | 2026-08-09 09:04:58 | 1 | ||||||||
|
HAP 2 Resource Report Resource Website |
HAP 2 (RRID:SCR_009217) | HAP 2 | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154372 | SCR_009217 | HAPlotype analysis of polymorphic markers | 2026-08-09 09:05:12 | 0 | |||||||
|
GTOOL Resource Report Resource Website 10+ mentions |
GTOOL (RRID:SCR_009215) | GTOOL | software application, software resource | Software application for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154368 | SCR_009215 | 2026-08-09 09:04:58 | 42 | |||||||||
|
GMCHECK Resource Report Resource Website |
GMCHECK (RRID:SCR_009213) | GMCHECK | software application, software resource | Software application that finds the posterior probabilities for data errors for genotypes and phenotypes in pedigree data (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154362 | http://episun7.med.utah.edu/~alun/gmcheck/ | SCR_009213 | 2026-08-09 09:05:07 | 0 | ||||||||
|
FASTLINK Resource Report Resource Website 50+ mentions |
FASTLINK (RRID:SCR_009177) | FASTLINK | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, .. and can also run in parallel on shared memory unix machines |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
PMID:8807326 | OMICS_28405, nlx_154309 | https://sources.debian.org/src/fastlink/ | SCR_009177 | faster version of LINKAGE LINKAGE | 2026-08-09 09:05:11 | 59 | ||||||
|
GLIDERS Resource Report Resource Website 1+ mentions |
GLIDERS (RRID:SCR_009210) | GLIDERS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154359 | SCR_009210 | Genome-wide LInkage DisEquilibrium Repository and Search engine | 2026-08-09 09:05:07 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
