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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Probabilistic atlas of the human cerebellum Resource Report Resource Website 1+ mentions |
Probabilistic atlas of the human cerebellum (RRID:SCR_008797) | Probablistic Cerebellar Atlas | atlas, data or information resource | A probabilistic atlas of the cerebellar lobules in the space defined by the MNI152 template. The anatomical definitions are based on the fMRI atlas of an individual cerebellum by Schmahmann et al. (2000). To obtain a representative anatomical atlas, we separately masked the lobules on T1-weighted MRI scans (1mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). Using a different set of 23 participants, we also masked the deep cerebellar nucelei. These cerebella were then aligned using different commonly used normalization algorithms. The resultant probabilistic maps allow for the valid assignment of functional activations to specific cerebellar lobules and the nuclei, while providing a quantitative measure of the certainty of such assignments. Furthermore, maximum probability maps derived from these atlases can be used to define regions of interest (ROIs) in functional neuroimaging and neuroanatomical research. The atlas is included in the newer releases of FSL and the Anatomy toolbox. More version of the atlases for use with MRICroN are also available. | adult, early adult, cerebellum, functional magnetic resonance imaging | has parent organization: UCL Motor Control Group | NSF BSC 0726685 | PMID:19457380 | nlx_144298 | SCR_008797 | 2026-08-04 09:42:13 | 3 | |||||||
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VCU Nanomaterials Characterization Center Resource Report Resource Website 10+ mentions |
VCU Nanomaterials Characterization Center (RRID:SCR_012162) | VCU Nanomaterials Characterization Center | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Nanomaterials Characterization Center at Virginia Commonwealth University is a state of the art 4000 sq. ft. facility located within the new Health and Life Science Engineering Facility. The Center provides an academic structure for students in natural sciences, mathematics, engineering, and medicine to participate in nanoscience and nanotechnology research to acquire the skills necessary to pursue such careers. In the past year, VCU received two National Science Foundation major research instrumentation grants totaling more than $1.6 million to expand its capabilities for research in materials science. Combining these federal awards with state instrumentation grants and private donations, the facility has been able to build a state of the art facility with over $5 million in new equipment. This new equipment will allow faculty and student researchers from both VCU campuses, as well as other universities. |
is listed by: ScienceExchange is related to: Virginia Commonwealth University Labs and Facilities has parent organization: Virginia Commonwealth University; Virginia; USA |
NSF | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_10050 | SCR_012162 | Virginia Commonwealth University Nanomaterials Characterization Center | 2026-08-04 09:42:54 | 46 | |||||||
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PaleoClim database Resource Report Resource Website 10+ mentions |
PaleoClim database (RRID:SCR_025657) | database, data or information resource | Database of downscaled paleoclimate outputs at 2.5 minute resolution (~5 km at equator) that includes surface temperature and precipitation estimates from snapshot-style climate model simulations using HadCM3, a version of the UK Met Office Hadley Centre General Circulation Model. Database contains climatic data for three key time periods spanning from 3.3 to 0.787 million years ago: the Marine Isotope Stage 19 (MIS19) in the Pleistocene (~787 ka), the mid-Pliocene Warm Period (~3.264–3.025 Ma), and MIS M2 in the Late Pliocene (~3.3 Ma). Set of historical climate layers (climate grids) with spatial resolution of about 2.5 min. These data can be used for mapping and spatial modelling in Geographic Information Systems (GIS) or other computer programs. | historical climate layers, climate grids, paleoclimate outputs, 2.5 minute resolution, surface temperature, precipitation estimates, climate model simulations, climatic data, | NSF ; National Aeronautics and Space Administration ; São Paulo State Research Foundation ; Southern Illinois University ; University of Leeds International Research Collaboration Award ; European Research Council |
PMID:30422125 | Free, Freely available | SCR_025657 | Paleoclim | 2026-08-04 09:45:49 | 12 | ||||||||
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tTFtarget Resource Report Resource Website 1+ mentions |
tTFtarget (RRID:SCR_025631) | database, data or information resource | Transcription factor target database. Platform consolidating both computationally predicted and experimentally validated binding sites between transfer RNA-derived fragments and target genes or transcripts across multiple organisms. | Transcription factor target, validated binding sites, transfer RNA-derived fragments, target genes, multiple organisms, | NLM R01LM014087; NSF |
DOI:10.1093/nar/gkad815 | Free, Freely available | SCR_025631 | tRFtarget 2.0, tRFtarget 1.0 | 2026-08-04 09:45:52 | 2 | ||||||||
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SIMS Resource Report Resource Website 1+ mentions |
SIMS (RRID:SCR_025787) | software application, software resource | Software label transfer tool for single-cell RNA sequencing analysis. Scalable, Interpretable Modeling for Single-cell RNA-seq data classification. | label transfer, single-cell RNA sequencing analysis, single-cell RNA-seq data classification, | Schmidt Futures ; NHGRI 1RM1HG011543; NSF ; NIMH 1U24MH132628; University of California Office of the President ; QualcommInstitute |
PMID:38823397 | Free, Available for download, Freely available | SCR_025787 | scalable, interpretable machine learning for single cell | 2026-08-04 09:45:53 | 2 | ||||||||
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Predictomes Resource Report Resource Website 1+ mentions |
Predictomes (RRID:SCR_026691) | database, data or information resource | Interactive database of protein protein interactions modeled by AlphaFold multimer. Classifier-curated database of AlphaFold-modeled protein-protein interactions. | Classifier-curated database, AlphaFold-modeled protein-protein interactions, interactive database, protein protein interactions, | NSF ; NHLBI HL098316 |
PMID:38645019 | Free, Freely available | SCR_026691 | 2026-08-04 09:46:03 | 2 | |||||||||
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RFMix Resource Report Resource Website 1+ mentions |
RFMix (RRID:SCR_027030) | software application, software resource | Software tool for local ancestry and admixture inference. Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference. | Discriminative Modeling, local ancestry and admixture inference, | NLM LM007033; NHGRI 2R01HG003229; NSF |
PMID:23910464 | Restricted | SCR_027030 | 2026-08-04 09:46:08 | 5 | |||||||||
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RagTag Resource Report Resource Website 50+ mentions |
RagTag (RRID:SCR_027293) | software resource, software toolkit, source code | Collection of software tools for scaffolding and improving modern genome assemblies. Reference-based scaffolder. Used for fast and flexible genome assembly scaffolding and improvement. | Reference-based scaffolder, genome assembly scaffolding, scaffolding, genome assemblies, | NIH Office of the Director S10OD028632; NSF ; Howard Hughes Medical Institutes ; European Research Council ; Swiss National Science Foundation |
PMID:36522651 | SCR_027293 | 2026-08-04 09:46:10 | 66 | ||||||||||
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OpenMEE Resource Report Resource Website 1+ mentions |
OpenMEE (RRID:SCR_027300) | data processing software, software application, software resource, data analysis software | Open-source, cross-platform software for ecological and evolutionary meta-analysis. | ecological and evolutionary meta-analysis, ecological, evolutionary, meta-analysis, | NSF | DOI:10.1111/2041-210X.12708 | Free, Available for download, Freely available | SCR_027300 | 2026-08-04 09:46:10 | 1 | |||||||||
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PyReconstruct Resource Report Resource Website 1+ mentions |
PyReconstruct (RRID:SCR_027562) | software application, software resource, source code | Software successor to the Reconstruct annotation tool. PyReconstruct runs on all major operating systems, breaks through legacy RAM limitations, features intuitive and collaborative curation system, and employs flexible and dynamic approach to image registration. Used to analyze, display, and publish experimental or connectomics data. Suited for generating ground truth to implement in automated segmentation, outcomes of which can be returned to PyReconstruct for proofreading and quality control. | analyze, display, publish, experimental data, connectomics data, | NIMH R56MH139176; NSF |
PMID:40737319 | Free, Available for download, Freely available | SCR_027562 | 2026-08-04 09:46:14 | 1 | |||||||||
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PySeq2500 Resource Report Resource Website |
PySeq2500 (RRID:SCR_027678) | software application, software resource, source code | Software tool to control Illumina HiSeq 2500 System. Open source Python code base and flow cell design that converts Illumina HiSeq 2500 instrument, comprising epifluorescence microscope with integrated fluidics, into open platform for programmable applications without need for specialized engineering or software development expertise.Enables non-specialists to develop and implement fluidics coupled imaging methods in benchtop system. | control Illumina HiSeq 2500 System, develop and implement fluidics coupled imaging, | works with: Illumina: HiSeq 2500 System | NSF | DOI:10.1038/s41598-022-08740-w | Free, Available for download, Freely available | https://regenseq.github.io/ | SCR_027678 | 2026-08-04 09:46:15 | 0 | |||||||
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University of Oklahoma Biomolecular Structure Core Facility Resource Report Resource Website |
University of Oklahoma Biomolecular Structure Core Facility (RRID:SCR_028074) | access service resource, core facility, service resource | Offers access to instrumentation, training and services for structure determination of macromolecular molecules using single crystal X-ray diffraction and/or cryo-EM Single Particle Analysis (SPA). Instrumentation is available for initial crystallization trials, optimization of crystallization, single crystal X-ray diffraction and data collection at synchrotron radiation facilities, as well as electron microscopy grid preparation for cryo-EM (SPA), screening and data collection using a Thermo Scientific Tundra Cryo-TEM and assistance for data collection at national laboratories. | ABRF, structure determination, macromolecular molecules, single crystal X-ray diffraction, cryo-EM Single Particle Analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University of Oklahoma; Oklahoma; USA |
NIH P20GM103640; NIH P30GM145423; NSF 0922269 |
ABRF_5821 | https://coremarketplace.org/RRID:SCR_028074/?citation=1 | SCR_028074 | 2026-08-04 09:46:21 | 0 | ||||||||
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CellTool Resource Report Resource Website |
CellTool (RRID:SCR_028232) | software application, standalone software, software resource | Stand-alone open-source software with graphical user interface for analysis of time-lapse microscopy images. Combines bio-image analysis and mathematical modeling for study of DNA repair dynamics. | analysis of time-lapse microscopy images, time-lapse microscopy images, | NSF | PMID:38069107 | Free, Available for download, Freely available | SCR_028232 | 2026-08-04 09:46:26 | 0 |
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