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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Concept Hub Resource Report Resource Website |
Concept Hub (RRID:SCR_013586) | topical portal, portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. A database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub. | collaboration, concept, consumer, data, developer, health care, terminology | is related to: HDD Access | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. | SCR_013586 | ConceptHub | 2026-08-04 09:43:14 | 0 | |||||||||
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Brigham and Women’s Hospital NeuroTechnology Studio Core Facility Resource Report Resource Website |
Brigham and Women’s Hospital NeuroTechnology Studio Core Facility (RRID:SCR_027687) | access service resource, core facility, service resource | Offers advanced instrumentation and expert support to advance understanding of brain function and brain disease by providing researchers with access to cutting-edge technologies. Provides access to advanced instrumentation for optical microscopy, genomics, metabolic imaging and other technologies, as well as image analysis software. Provides expert support and training, data quality and interpretation. | ABRF, optical microscopy, genomics, metabolics, imaging, training, data, neuroscience, image analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
Restricted | ABRF_5659 | https://coremarketplace.org/RRID:SCR_027687/?citation=1 | SCR_027687 | 2026-08-04 09:46:16 | 0 | ||||||||
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BIDMC Division of Digital Psychiatry LAMP platform Core Facility Resource Report Resource Website |
BIDMC Division of Digital Psychiatry LAMP platform Core Facility (RRID:SCR_027767) | access service resource, core facility, data or information resource, service resource | Core collects data to capture and consider the real-time lived experiences of patients. Uses open-source digital platform and mobile app for neuropsychiatric research and clinical care, to monitor, support, and improve brain health by collecting real-time data (like location, activity, heart rate via sensors), conducting digital assessments (surveys, cognitive tests), and delivering interventions (meditation, journaling, psychoeducation) to patients and clinicians. It helps study behavioral patterns, track symptoms, and personalize mental health treatment through features organized around Learn, Assess, Manage, and Prevent. | ABRF, study behavioral patterns, track symptoms, personalize mental health treatment, data, neuropsychiatric research and clinical care management platform, run remote smartphone-based research studies, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
ABRF_3107 | https://coremarketplace.org/?FacilityID=3107, https://docs.lamp.digital/, https://github.com/BIDMCDigitalPsychiatry/LAMP-platform/ | SCR_027767 | mindLAMP, BIDMC mindLAMP, Beth Israel Deaconess Medical Center mindLAMP | 2026-08-04 09:46:17 | 0 | ||||||||
|
Collection of Alternative Methods for Regulatory Application (CAMERA) Resource Report Resource Website |
Collection of Alternative Methods for Regulatory Application (CAMERA) (RRID:SCR_027893) | CAMERA | database, data or information resource | Interactive database and user interface providing online access to validated alternative methods for U.S. regulatory and other contexts of use. Central hub and unified resource of validated alternative methods that enhances accessibility to validation study reports, data, protocols / SOPs, and information on regulatory guidance.Users can filter searches by alternative method types, defined approaches, Test Method Endpoint, and regulatory guidance. | NAMSD, validated alternative methods, U.S. regulatory, validation study reports, data, protocols, SOPs, regulatory guidance, | Free, Freely available | SCR_027893 | Collection of Alternative Methods for Regulatory Application | 2026-08-04 09:46:20 | 0 | |||||||||
|
OAI Knowledge base Resource Report Resource Website |
OAI Knowledge base (RRID:SCR_028107) | knowledge base, data or information resource | Centralized, annotated repository for the Osteoarthritis Initiative (OAI) study, designed to accelerate research by organizing and linking extensive clinical, imaging (MRI/X-ray), and biomarker data. It aims to help researchers analyze knee osteoarthritis prevention, treatment, and progression. | DRKB, clinical, imaging, MRI, X-ray, biomarker, data, osteoarthritis | Free, Freely available, | SCR_028107 | Osteoarthritis Initiative Knowledge base | 2026-08-04 09:46:21 | 0 | ||||||||||
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Human Brain Variation Project Resource Report Resource Website |
Human Brain Variation Project (RRID:SCR_028065) | portal, web service, software resource, data access protocol, project portal, data or information resource | Project provides data currently generated with support from the NIH Brain Initiative Cell Atlas Network (BICAN). Broad Institute collaboration supported by the NIH BRAIN Initiative, to create comprehensive atlas of cellular variation in the healthy human brain. It maps data from millions of cells across diverse individuals to understand how brain biology differs, helping researchers distinguish healthy variation from disease states. | Brain, data, healthy human brain, cells, |
is related to: BRAIN Initiative Cell Atlas Network is related to: BRAIN Initiative |
Free, Freely available | SCR_028065 | Human Brain Variation Project (McCarroll, Macosko) | 2026-08-04 09:46:23 | 0 | |||||||||
|
Washington University School of Medicine Knight ADRC Request Center Resources Core Facility Resource Report Resource Website 1+ mentions |
Washington University School of Medicine Knight ADRC Request Center Resources Core Facility (RRID:SCR_025254) | access service resource, core facility, service resource | Provides on request resources including Data: clinical and cognitive measures as well as MRI and amyloid imaging scans; Tissue: frozen brain tissue, paraffin brain sections, antemortem CSF, DNA, fibroblast, dermal fibroblasts, plasma (fasting and non-fasting) and iPSC; Participants: eligible participants may be invited to enroll in research of other investigators after appropriate review. Researchers can use the request portal to review Center guidelines and policies; view available data and tissue; access data tables and codebooks; and submit request for resources. | ABRF, Alzheimer research, Data, OASIS, Biospecimen, tissue, imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Washington University School of Medicine Knight Alzheimers Disease Research Center has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Alzheimer disease, dementia | NIA P30AG066444; NIA P01AG026276; NIA U19 AG0032438; NIA P01AG003991 |
ABRF_2734 | https://coremarketplace.org/?FacilityID=2734&citation=1 | SCR_025254 | ADRC Request Center Resources | 2026-08-04 09:45:43 | 2 | ||||||
|
DSigDB Resource Report Resource Website 50+ mentions |
DSigDB (RRID:SCR_026202) | database, data or information resource | Online database provides collection of gene sets based on quantitative inhibition and/or drug-induced gene expression changes data of drugs and compounds. Allows users to search, view and download drugs/compounds and gene sets. | gene sets, quantitative inhibition, drug induced, gene expression changes, data, drugs, compounds, | NCI P30CA046934; NCI P50CA058187 |
PMID:25990557 | Free, Freely available, | SCR_026202 | , Drug Signatures Database, drug SIGnatures DataBase | 2026-08-04 09:45:56 | 82 | ||||||||
|
University of New England COBRE Histology and Imaging Core Facility Resource Report Resource Website |
University of New England COBRE Histology and Imaging Core Facility (RRID:SCR_017885) | access service resource, core facility, service resource | Core provides access to expertise, training and specialized instrumentation related to tissue processing, sectioning, staining, immunohistochemistry and microscopy. Offers services and training related to image analysis and image analysis software to guide investigators in choosing best methods for presenting their data.Services include Trimming of wet tissues,Tissue processing into paraffin, OCT and paraffin embedding, Sectioning of paraffin-embedded/frozen tissues, Routine and special histochemical staining, Immunohistochemistry/Immunofluorescence, Antibody optimization, Brightfield/ widefield/ confocal microscopy, Image capture and image analysis.Core has cryostats, microtomes and microscopes available for reservation. | Instrumentation, tissue, processing, sectioning, staining, immunochemistry, microscopy, training, expertise, image, analysis, data, trimming, wet, tissue, processing, paraffin, embedding, immunofluorescence, antibody, optimization, microscopy, cryostat, microtome, service, core | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103643 | Open | ABRF_748 | https://coremarketplace.org/?FacilityID=748&citation=1 | SCR_017885 | Histology and Imaging Core | 2026-08-04 09:44:18 | 0 | ||||||
|
Florida State University X-Ray Crystallography Core Facility Resource Report Resource Website 1+ mentions |
Florida State University X-Ray Crystallography Core Facility (RRID:SCR_017922) | XRF | access service resource, core facility, service resource | Shared macromolecular x-ray crystallography facility provides instruments and expertise for screening, optimizing, imaging, growing, and storing crystals of biological macromolecules. The X-Ray Facility coordinates single crystal x-ray diffraction data collection at third generation synchrotron x-ray source using FSU's membership at the National Synchrotron Light Source II at Brookhaven National Lab, Upton, NY. XRF also offers custom buffer preparation, optimization, and crystal set-up using multi-well format crystallization blocks and plates.XRF has ARI Crystal Gryphon robot, Formulatrix Rock Imager, Formulator 16, Rock Maker software, RUMED incubator, Cryo storage and shipping dewars, Leica S8 AP0 Zoom microscope and other amenities. | Macromolecular, X-ray, crystallography, instrument, expertise, collecting, processing, diffraction, data, single, crystal, protein, screeing, service, core |
is listed by: ABRF CoreMarketplace has parent organization: Florida State University; Florida; USA |
Restricted | ABRF_815 | https://coremarketplace.org/?FacilityID=815 | http://biophysics.fsu.edu/facilities/x-ray-facility/ | SCR_017922 | X-Ray Crystallography Facility | 2026-08-04 09:44:14 | 1 | |||||
|
Kansas University Medical Center Hoglund Brain Imaging Center Core Facility Resource Report Resource Website |
Kansas University Medical Center Hoglund Brain Imaging Center Core Facility (RRID:SCR_017920) | HBIC | access service resource, core facility, service resource | Core provides imaging capabilities, including magnetic resonance imaging, magnetoencephalolgraphy, electroencephalography, magnetocardiography, and ultrasound,expertise in cognitive neuroscience, neurobiology, biomedical physics, and computing, together with support team of technologists, nurses, research associates, and research assistants. Through strong collaborations, these individuals assist with study design, collection of data, analysis, and interpretation of results. HBIC supports investigators with new technique development, feasibility studies, pilot funding, preparing grant applications and manuscripts, and compliance. Carries out investigator-initiated research and research/clinical trials sponsored by public and private agencies. Offers education and training. | Imaging, magnetic, resonance, magnetoencephalography, electroencephalography, magnetocardiography, ultrasound, cognitive, neuroscience, neurobiology, biomedical, physics, computing, data, collection, analysis, training, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_807 | SCR_017920 | Hoglund Brain Imaging Center | 2026-08-04 09:44:15 | 0 | |||||||
|
Purdue University Bioinformatics Core Facility Resource Report Resource Website |
Purdue University Bioinformatics Core Facility (RRID:SCR_017896) | access service resource, core facility, service resource | Core to facilitate, amplify, and accelerate biological research and discovery through application of bioinformatics. Provides bioinformatic analysis services for Next Generation Sequencing (NGS) data. | Bioinformatic, support, analysis, next, generation, sequencing, data, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_760 | SCR_017896 | Bioinformatics Core | 2026-08-04 09:44:15 | 0 | ||||||||
|
Koch Institute at MIT Data Science and Multimodal Integration Core Facility Resource Report Resource Website |
Koch Institute at MIT Data Science and Multimodal Integration Core Facility (RRID:SCR_017894) | access service resource, core facility, service resource | Core provides central hub to help leverage bioinformatics and data science methods in research projects. Services include Transcriptomics: bulk RNA-Seq, single-cell RNA-Seq, and spatial RNA-Seq; Genomics: SNP, structural variants (SV), and copy number variation (CNV) analyses; Regulatory genomics: ChIP-Seq, ATAC-Seq, CUT&RUN, and Hi-C; Functional genomics: CRISPR-based loss-of-function screens;Image and metadata analysis: AI/ML-based approaches including knowledge graphs. Offers training, education, collaboration, consultation,custom guidance on study design and analysis approaches. Provides classroom and custom training sessions on computational, data science, bioinformatics topics, tailored workshops for requested specialized topics. Offers technical infrastructure and support, computing resource optimization and facilitation, bioinformatics software deployment (conda environments and Docker containers), version control and reproducible science (Git repositories), data management support and submission to public repositories. | Data Science, Bioinformatics, support, training, data, analysis, storage, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Restricted | SCR_017155, ABRF_769 | https://coremarketplace.org/?FacilityID=769 | SCR_017894 | Barbara K. Ostrom Bioinformatics Facility, Data Science & Multimodal Integration Core (DSMI), The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility, Bioinformatics and Computing Core | 2026-08-04 09:44:18 | 0 | |||||||
|
Loyola University Genomics Core Facility Resource Report Resource Website |
Loyola University Genomics Core Facility (RRID:SCR_017857) | LGF | access service resource, core facility, service resource | Core provides next-generation sequencing capabilities using Illumina MiSeq. Helps with experimental design, quality control analysis, library preparation, and data analysis. MiSeq desktop sequencer allows to access applications such as targeted gene sequencing, metagenomics, small genome sequencing, targeted gene expression, amplicon sequencing, and HLA typing.MiSeq is capable of delivering up to 15 Gb of output with 25 million sequencing reads and 2x300 basepair read lengths. | Next, generation, sequencing, Illumina MiSeq, experimental, design, quality, control, analysis, library, preparation, data, targeted, gene, metagenomics, genome, expression, amplicon, HLA, typing, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_678 | SCR_017857 | Loyola Genomics Facility | 2026-08-04 09:44:18 | 0 | |||||||
|
University of California at San Francisco, Nikon Imaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of California at San Francisco, Nikon Imaging Center Core Facility (RRID:SCR_017862) | access service resource, core facility, service resource | Core provides light microscopy instrumentation, microscopy training and education and can provide assistance with experiment design, data acquisition, and image analysis. Provides training for users.Services include:Fluorescence imaging (up to 5 colors) Brightfield, phase contrast, and DIC imaging;High speed imaging (over 100 frames per second);Automated imaging, including multiwell plates;Super-resolution imaging (SIM / STORM / PALM);Single molecule imaging;3D confocal imaging;Gigapixel image stitching;Live cell time lapse imaging;Photoactivation and photobleaching;Light sheet imaging of cleared tissues. | Light, microscopy, training, education, support, experiment, design, data, acquisition, iamge, analysis, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_680 | SCR_017862 | Nikon Imaging Center at UCSF | 2026-08-04 09:44:14 | 1 | ||||||||
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Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility (RRID:SCR_017911) | MRL | access service resource, core facility, service resource | Core facility that conducts fee for service mass spectrometry-based non-targeted and targeted metabolomic studies. The facility serves and partners with both on- and off-campus clients. | Metabolomics, Non-targeted, Metabolite Profiling, Targeted Metabolomics, mass spectrometry imaging, direct infusion, HPLC, calillary, electrophoresis, data, analysis, service, core |
is listed by: ABRF CoreMarketplace has parent organization: Iowa State University; Iowa; USA |
Open | ABRF_796 | https://coremarketplace.org/?FacilityID=796&citation=1 | SCR_017911 | Iowa State University Metabolomics Research Laboratory, Iowa State University W.M. Keck Metabolomics Research Laboratory, W. M. Keck Metabolomics Research Laboratory | 2026-08-04 09:44:15 | 9 | ||||||
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North Carolina University at Chapel Hill School of Medicine Macromolecular X-Ray Crystallography Core Facility Resource Report Resource Website |
North Carolina University at Chapel Hill School of Medicine Macromolecular X-Ray Crystallography Core Facility (RRID:SCR_017839) | MX Facility | access service resource, core facility, service resource | Core provides support and infrastructure necessary to initiate and successfully complete structural biology or structural chemistry project. Offers services in Crystallization,X-Ray DiffractionData Collection,Structure Determination and Refinement. | Structural, biology, chemistry, X-ray, crystallography, diffraction, data, collection, refinement, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086 | Open | ABRF_629 | SCR_017839 | Macromolecular X-Ray Crystallography | 2026-08-04 09:44:17 | 0 | ||||||
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Scripps Research Institute - Florida Flow Cytometry Core Facility Resource Report Resource Website |
Scripps Research Institute - Florida Flow Cytometry Core Facility (RRID:SCR_017830) | access service resource, core facility, service resource | Flow cytometry core to measure phenotypic, biochemical and molecular characteristics of individual cells or particles suspended in fluid stream.Flow Cytometry Core on Jupiter, Florida campus of Scripps Research provides services including Cell Sorting, Analytical Cytometry,Data Analysis,Microdissection and Imaging. Hematology services including:Cell Sorting on ARIA: violet, blue, green and red lasers and on FUSION: violet, blue, green and red lasers; Cell Analysis on LSR2: ultra-violet, violet, blue, green and red lasers, GALLIOS: violet, blue, green and red lasers,CANTO: violet, blue and red lasers;Laser Microdissection and Fluorescence Imaging using LEICA LMD 7000;Hematology using HEMAVET 950FS. | Flow, cytometry, phenotypic, cell, particle, sorting, data, analysis, microdissection, imaging, hematology, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_615 | SCR_017830 | Flow Cytometry | 2026-08-04 09:44:13 | 0 | ||||||||
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University of Illinois at Urbana-Champaign Core Facilities at IGB Resource Report Resource Website |
University of Illinois at Urbana-Champaign Core Facilities at IGB (RRID:SCR_017938) | access service resource, core facility, service resource | Core for biological microscopy and image analysis. Offers high-end equipment,user training,ongoing support, including experiment design and data interpretation,twenty-four hour access Services,3D Printing, Transfer Files, Image Analysis,Histology,Instrument Training. | Microscopy, image, analysis, equipment, training, data, analysis, 3D, printing, histology, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_881 | SCR_017938 | Core Facilities at IGB | 2026-08-04 09:44:15 | 0 | ||||||||
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Northwestern University Biostatistics Collaborative Center Resource Report Resource Website |
Northwestern University Biostatistics Collaborative Center (RRID:SCR_017943) | access service resource, core facility, service resource | Core where division members engage in statistical methods development and application, research design and statistical computing for health science research. Faculty interests encompass Bayesian methods, bioinformatics, causal inference, computational biology, clinical trials, diagnostic testing, longitudinal modeling, missing data modeling, observational data methods, semi-parametric models, spatial modeling, statistical genetics and survival analysis. | Biostatistics, statistical, method, Bayesian, casual, inference, computational, biology, clinical, trial, diagnostic, testing, longitudinal, modeling, missing, data, observational, semi parametric, spatial, genetics, survival, analysis, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_945 | SCR_017943 | Biostatistics | 2026-08-04 09:44:19 | 0 |
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