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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
LSU AgCenter Biotechnology Laboratory
 
Resource Report
Resource Website
1+ mentions
LSU AgCenter Biotechnology Laboratory (RRID:SCR_012536) LSU ABL service resource, core facility, access service resource The LSU AgCenter Biotechnology Laboratory (ABL) is a core facility that provides basic and applied research expertise to support researchers in the LSU system as well as those in other academic institutions and industry. The ABL was formed in 1998 to provide support to faculty in performing biomolecular research. In 2010, the ABL was merged with the Protein Facility in LSU''''s College of Basic Sciences. Today, the ABL consists of three units: the Protein Facility, the Plant Transformation Facility and the Animal Cell Culture Facility. is listed by: ScienceExchange
is related to: Louisiana State University Labs and Facilities
has parent organization: Louisiana State University; Louisiana; USA
SciEx_4357 SCR_012536 LSU AgCenter Biotechnology Laboratory (ABL), Louisiana State University AgCenter Biotechnology Laboratory 2026-08-11 09:42:28 5
Childrens Hospital Boston Intellectual And Developmental Disabilities Research Center - Molecular Genetics Core
 
Resource Report
Resource Website
1+ mentions
Childrens Hospital Boston Intellectual And Developmental Disabilities Research Center - Molecular Genetics Core (RRID:SCR_012414) BCH IDDRC Molecular Genetics Core, IDDRC Molecular Genetics Core service resource, core facility, access service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 8,2024. An Core facility is listed by: ScienceExchange
has parent organization: Harvard Medical School; Massachusetts; USA
SciEx_13152 SCR_012414 Children?s Hospital Boston Intellectual and Developmental Disabilities Research Center - Molecular Genetics Core, Children''s Hospital Boston IDDRC - Molecular Genetics Core, Children''s Hospital Boston Intellectual And Developmental Disabilities Research Center - Molecular Genetics Core 2026-08-11 09:42:25 1
University of Nebraska Medical Center Mass Spectrometry and Proteomics Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Nebraska Medical Center Mass Spectrometry and Proteomics Core Facility (RRID:SCR_012539) MSPCF service resource, core facility, access service resource MSPCF maintains and uses equipment for protein separation and imaging, as well as for sample preparation for mass spectrometry analysis. Offers range of bioinformatics tools for data mining and evaluation. Services include Protein Identification, Protein Interactome Analysis, Protein Post-translational Modifications, Quantitative Mass Spectrometry, Molecular Weight determination. ABRF, USEDit, protein separation and imaging, sample preparation, mass spectrometry analysis, is listed by: ScienceExchange
is listed by: ABRF CoreMarketplace
is related to: University of Nebraska Medical Center Labs and Facilities
is related to: USEDit
has parent organization: University of Nebraska; Nebraska; USA
SciEx_452, ABRF_219 https://coremarketplace.org/?FacilityID=219&citation=1, http://www.scienceexchange.com/facilities/mass-spectrometry-and-proteomics-core-facility SCR_012539 UNMC MSPCF, University of Nebraska Medical Center Mass Spectrometry and Proteomics Core Facility, UNMC Mass Spectrometry and Proteomics Core Facility 2026-08-11 09:42:28 7
Pennsylvania State University Materials Characterization Lab Core Facility
 
Resource Report
Resource Website
1+ mentions
Pennsylvania State University Materials Characterization Lab Core Facility (RRID:SCR_012386) PSU MCL service resource, core facility, access service resource Fully-staffed, open access, analytical research facility at Penn State's Materials Research Institute. Provided services include Surface Analysis (XPS, AFM, AES), Electron Microscopy (TEM, SEM, FIB, EPMA), X-ray Scattering (XRD and SAXS), Molecular Spectroscopy (FTIR, Raman, UV-VIs-NIR), Electrical Testing, Optical Microscopy, Thermal Analysis, Mechanical Testing, and Sample Preparation. ABRF, Surface Analysis, Electron Microscopy, X-ray Scattering, Molecular Spectroscopy, Electrical Testing, Optical Microscopy, Thermal Analysis, Mechanical Testing, Sample Preparation, is listed by: ABRF CoreMarketplace
has parent organization: Pennsylvania State University
SciEx_12838, ABRF_3112 https://coremarketplace.org/?FacilityID=3112&citation=1 http://www.scienceexchange.com/facilities/materials-characterization-lab SCR_012386 , Penn State Materials Characterization Lab, Materials Characterization Lab, Pennsylvania State University Materials Characterization Lab 2026-08-11 09:42:24 5
University of Georgia Bioexpression and Fermentation Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Georgia Bioexpression and Fermentation Core Facility (RRID:SCR_012421) UGA BFF, BFF service resource, core facility, access service resource BFF consists of Fermentation Research Facility, Protein Purification Facility, Monoclonal Antibody Facility and Cell Culture Facility. Provides services covering wide range of biomanufacturing areas, protein expression, purification and antibody discovery.Provides equipment and expertise in biotechnological applications to academic and industry clients. USEDit, fermentation, bioexpression, protein purification, monoclonal antibody, cell culture, ABRF is listed by: ScienceExchange
is listed by: ABRF CoreMarketplace
is related to: University of Georgia Labs and Facilities
has parent organization: University of Georgia; Georgia; USA
Open SciEx_10939, ABRF_463, SciEx_13188 https://coremarketplace.org/?FacilityID=463, http://www.scienceexchange.com/facilities/bioexpression-and-fermentation-facility SCR_012421 UGA Bioexpression and Fermentation Facility (BFF), UGA Bioexpression and Fermentation Facility, University of Georgia Bioexpression and Fermentation Facility (BFF), University of Georgia Bioexpression and Fermentation Facility 2026-08-11 09:42:26 1
SCAR
 
Resource Report
Resource Website
50+ mentions
SCAR (RRID:SCR_006227) SCAR service resource, analysis service resource, data analysis service, production service resource A web tool to create, display and manipulate structures of small molecules, proteins and DNA. structure, small molecule, protein, dna, visualize, manipulate, display, create is related to: DAM-Bio
has parent organization: University of Athens Biophysics and Bioinformatics Laboratory
nlx_151782 SCR_006227 Structure Creation and Representation, SCAR - Structure Creation and Representation, S.C.A.R., S.C.A.R 2026-08-11 09:41:17 86
NON-RED
 
Resource Report
Resource Website
1+ mentions
NON-RED (RRID:SCR_006225) NON-RED service resource, analysis service resource, data analysis service, production service resource A web tool to select biological sequences from a given set, with similarity / homology less than a user-defined level. This web-based application takes as input a set of N sequences and outputs a set of sequences of user-determined redundancy. Initially, the algorithm runs an all-against-all BLAST alignment on the input data set and creates an NxN matrix of pairwise distances defined by the similarity percentages. In the next step, the algorithm removes the sequence with the largest number of neighbors, causing that sequence not to be counted as a neighbor of any other sequence during the next iterations. It then reassesses the number of neighbors of each sequence and repeats the previous step until the sequences left over have no more neighbors. The user can specify the similarity (%) threshold and the minimum coverage length of the alignments. Sequences with a similarity below the threshold or a smaller coverage than the minimum length are not considered to be neighbors. protein sequence, nucleotide, blast, algorithm, alignment, similarity, homology, sequence has parent organization: University of Athens Biophysics and Bioinformatics Laboratory nlx_151778 SCR_006225 NON-RED 2026-08-11 09:41:22 1
National Cell Repository for Alzheimer's Disease
 
Resource Report
Resource Website
10+ mentions
National Cell Repository for Alzheimer's Disease (RRID:SCR_007313) NCRAD biomaterial supply resource, tissue bank, material resource Cell repository for Alzheimer's disease that collects and maintains biological specimens and associated data. Its data is derived from large numbers of genetically informative, phenotypically well-characterized families with multiple individuals affected with Alzheimer's disease, as well as individuals for case-control studies. gene, alzheimers disease, dementia, dna, late onset, memory loss, phenotypic data, research study, clinical data, plasma, serum, rna, brain tissue, family history, blood is listed by: One Mind Biospecimen Bank Listing
is related to: DIAN - Dominantly Inherited Alzheimer Network
is related to: Alzheimers Disease Genetics Consortium
is related to: National Alzheimer's Coordinating Center
has parent organization: Indiana University; Indiana; USA
Alzheimer's disease, Late-onset Alzheimer's disease, Dementia, Memory loss NIA ;
NIH Blueprint for Neuroscience Research
Public, Application required for genetic research nif-0000-00178 SCR_007313 2026-08-11 09:41:32 36
SecStr
 
Resource Report
Resource Website
1+ mentions
SecStr (RRID:SCR_006220) SecStr service resource, analysis service resource, data analysis service, production service resource A tool to Predict the Secondary Structure of a protein from its amino acid sequence alone. The SecStr package uses six different secondary structure prediction methods (Nagano, Garnier et al., Burges et al., Chou and Fasman , Lim and Dufton and Hider). The results of those methods are combined into a Joint Prediction Histogram (JPH) as described by Hamodrakas, 1988 and Hamodrakas et al., 1982. As previously mentioned, the SecStr package contains computer programs making use of the secondary structure prediction methods of Nagano, Garnier et al., Burges et al., Chou and Fasman, Lim and Dufton and Hider. These programs were written in Fortran. The results of individual prediction methods are combined as described by Hamodrakas (1988), using a Perl program, to produce joint prediction histograms (JPH), for three types of secondary structure, which may be presented separately on a Java Applet. The output may be given either in text or graphics mode. For the latter a Java capable browser is required. secondary structure, prediction, protein, algorithm, text, graphics is related to: DAM-Bio
has parent organization: University of Athens Biophysics and Bioinformatics Laboratory
All rights are reserved for the whole or part of the program. Permission to use, Copy, And modify this software and its documentation is granted for academic use provided that:1. this copyright notice appears in all copies of the software and related documentation; 2. bugs will be reported to the authors. nlx_151767 SCR_006220 SecStr - Secondary Structure Prediction, Secondary Structure Prediction, Secondary Structure Prediction of Proteins 2026-08-11 09:41:18 7
CW-PRED
 
Resource Report
Resource Website
10+ mentions
CW-PRED (RRID:SCR_006188) CW-PRED service resource, analysis service resource, data analysis service, production service resource A web tool for the prediction of Cell Wall-Anchored Proteins in Gram+ Bacteria. Gram-positive bacteria have surface proteins that are often implicated in virulence. A group of extracellular proteins attached to the cell wall contains an LPXTG-like motif that is target for cleavage and covalent coupling to peptidoglycan by sortase enzymes. A new Hidden Markov Model (HMM), an extension to the HMM model from Litou et al., http://www.ncbi.nlm.nih.gov/pubmed/18464329, was developed for predicting the LPXTG and LPXTG-like cell-wall proteins of Gram-positive bacteria. An analysis of 177 completely sequenced genomes has been performed as well. We identified in total 1456 cell-wall proteins, from which 1283 have the LPXTG motif, 39 the NPXTG motif, 53 have the LPXTA and 81 the LAXTG motif. hidden markov model, gram-positive bacteria, protein, classification, cell-wall protein has parent organization: University of Athens Biophysics and Bioinformatics Laboratory Free for academic use, Acknowledgement requested nlx_151733 SCR_006188 CW-PRED: A HMM-based method for the classification of cell wall-anchored proteins of Gram-positive bacteria 2026-08-11 09:41:22 16
GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
 
Resource Report
Resource Website
10+ mentions
GOEAST - Gene Ontology Enrichment Analysis Software Toolkit (RRID:SCR_006580) GOEAST service resource, analysis service resource, data analysis service, production service resource Gene Ontology Enrichment Analysis Software Toolkit (GOEAST) is a web based software toolkit providing easy to use, visualizable, comprehensive and unbiased Gene Ontology (GO) analysis for high-throughput experimental results, especially for results from microarray hybridization experiments. The main function of GOEAST is to identify significantly enriched GO terms among give lists of genes using accurate statistical methods. Compared with available GO analysis tools, GOEAST has the following unique features: * GOEAST supports analysis for data from various resources, such as expression data obtained using Affymetrix, illumina, Agilent or customized microarray platforms. GOEAST also supports non-microarray based experimental data. The web-based feature makes GOEAST very user friendly; users only have to provide a list of genes in correct formats. * GOEAST provides visualizable analysis results, by generating graphs exhibiting enriched GO terms as well as their relationships in the whole GO hierarchy. * Note that GOEAST generates separate graph for each of the three GO categories, namely biological process, molecular function and cellular component. * GOEAST allows comparison of results from multiple experiments (see Multi-GOEAST tool). The displayed color of each GO term node in graphs generated by Multi-GOEAST is the combination of different colors used in individual GOEAST analysis. Platform: Online tool statistical analysis, gene ontology, high-throughput, microarray, hybridization, gene, visualization, bio.tools is listed by: Gene Ontology Tools
is listed by: Debian
is listed by: bio.tools
is related to: Gene Ontology
has parent organization: Chinese Academy of Sciences; Beijing; China
National Natural Science Foundation of China 30725014;
National Natural Science Foundation of China 90612019;
Ministry of Science and Technology of China 2007CB946901;
Chinese Academy of Sciences KSCX2-YW-R-134;
Chinese Academy of Sciences KSCX2-YW-N-024
PMID:18487275 Free for academic use biotools:goeast, nlx_149248 https://bio.tools/goeast SCR_006580 Gene Ontology Enrichment Analysis Software Toolkit, Gene Ontology Enrichment Analysis Software Toolkit (GOEAST) 2026-08-11 09:41:22 40
Squirrel Monkey Breeding and Research Resource
 
Resource Report
Resource Website
10+ mentions
Squirrel Monkey Breeding and Research Resource (RRID:SCR_006291) SMBRR portal, project portal, data or information resource, tissue bank, material resource, biomaterial supply resource SMBRR maintains the only self-sustaining national research resource of laboratory-born squirrel monkeys, their tissues and other biological materials, as well as the expertise to carry out research on this animal. Scientists with NIH grants utilize squirrel monkeys to study many diseases that threaten human health including Alzheimer's disease and other disorders of the central nervous system, drug addiction, malaria, and viral diseases. Center that carries out research on squirrel monkey biology and its research uses. It meets the needs of the biomedical research community in three ways: providing national resource for laboratory-born squirrel monkeys, having active research component that continues to add new information about the biology of the squirrel monkey with a particular emphasis on reproduction and colony management, and acts as a source of expertise for squirrel monkey biology, management and husbandry. ORIP, Office of Research Infrastructure Programs, reproductive biology, behavior, reproduction, disease, colony management, tissue, live animal, bodily fluid is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Texas MD Anderson Cancer Center
NIH Office of the Director P40 OD010938 Public nlx_151947 https://reporter.nih.gov/search/oopkAZDMqkCSLpwC7X2hHg/project-details/10558468, https://orip.nih.gov/comparative-medicine/programs/vertebrate-models, http://www.kccmr.org/ SCR_006291 Keeling Center for Comparative Medicine and Research Squirrel Monkey Breeding and Research Resource, KCCMR SMBRR, KCCMR Squirrel Monkey Breeding and Research Resource 2026-08-11 09:41:18 33
MAP-O-MAT
 
Resource Report
Resource Website
1+ mentions
MAP-O-MAT (RRID:SCR_008197) service resource, analysis service resource, data analysis service, production service resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 18, 2016. MAP-O-MAT is a web-based server for automated linkage mapping of human polymorphic DNA markers. The server uses publicly available genotype data for over 15,000 markers. It facilitates the verification of order and map distances for custom mapping sets using genotype data from the CEPH database, and from the Marshfield, SNP Consortium and Rutgers linkage maps. The CRI-MAP program is used for likelihood calculations and some mapping algorithms, and physical map positions are provided from the human genome assembly. general human genetics databases, automated, distance, dna, genotype, human, linkage, map, mapping, marker, polymorphic, position, verification has parent organization: Rutgers University; New Jersey; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-21251 http://compgen.rutgers.edu/mapomat/ SCR_008197 MAP-O-MAT 2026-08-11 09:41:39 2
Allen Mouse Spinal Cord Atlas
 
Resource Report
Resource Website
10+ mentions
Allen Mouse Spinal Cord Atlas (RRID:SCR_007418) Mouse Spinal Cord Atlas data or information resource, database, atlas Platform for exploring spinal cord at cellular and molecular levels. Map of gene expression for adult and juvenile mouse spinal cord. Provides map of normal mouse when used to compare gene expression in diseased or injury models. Interactive database of gene expression mapped across all anatomic segments of mouse spinal cord at postnatal days 4 and 56. Indexed set of images based on RNA in situ hybridization data, searchable and sortable by gene, age, expression, cervical, thoracic, lumbar, sacral, and coccygeal segments. gene, expression, adult, diseased, injury, juvenile, models, mouse, postnatal, RNA, hybridization, spinal, cord, molecular, neuroanatomy, data has parent organization: Allen Institute for Brain Science
has parent organization: Allen Brain Atlas
Free, Freely available nif-0000-00510 http://mousespinal.brain-map.org/ SCR_007418 2026-08-11 09:41:33 29
GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
 
Resource Report
Resource Website
500+ mentions
GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool (RRID:SCR_006848) GOrilla service resource, analysis service resource, data analysis service, production service resource A tool for identifying and visualizing enriched GO terms in ranked lists of genes. It can be run in one of two modes: * Searching for enriched GO terms that appear densely at the top of a ranked list of genes or * Searching for enriched GO terms in a target list of genes compared to a background list of genes. gene, genetic, ontology, ontology or annotation visualization, statistical analysis, term enrichment, visualization, analysis, protein is listed by: Gene Ontology Tools
is listed by: OMICtools
is related to: Gene Ontology
European Union FP6 ;
Yeshaya Horowitz Association
PMID:19192299 Acknowledgement requested, Free, Public nlx_80425, OMICS_02282 SCR_006848 Gene Ontology enRIchment anaLysis and visuaLizAtion tool, GOrilla: Gene Ontology Enrichment Analysis Visualization Tool 2026-08-11 09:41:27 524
ProfCom - Profiling of complex functionality
 
Resource Report
Resource Website
1+ mentions
ProfCom - Profiling of complex functionality (RRID:SCR_005797) ProfCom service resource, analysis service resource, data analysis service, production service resource Profiling of Complex Functionality (ProfCom) is a web-based tool for the functional interpretation of a gene list that was identified to be related by experiments. A trait which makes ProfCom a unique tool is an ability to profile enrichments of not only available Gene Ontology (GO) terms but also of complex function. A complex function is constructed as Boolean combination of available GO terms. The complex functions inferred by ProfCom are more specific in comparison to single terms and describe more accurately the functional role of genes. Platform: Online tool gene, function, profile, gene ontology, complex function, statistical analysis, bio.tools is listed by: Gene Ontology Tools
is listed by: bio.tools
is listed by: Debian
is related to: Gene Ontology
has parent organization: Institute of Bioinformatics and Systems Biology; Neuherberg; Germany
DFG PMID:16959266 Free for academic use biotools:profcom, nlx_149276 https://bio.tools/profcom SCR_005797 Profiling of Complex Functionality, Profiling of Complex Functionality (ProfCom) 2026-08-11 09:41:12 4
TM Function Database
 
Resource Report
Resource Website
1+ mentions
TM Function Database (RRID:SCR_007058) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Database of functional residues in alpha-helical and beta-barrel membrane proteins. Each protein is identified with its name and source alongwith the Uniprot code. The protein data bank (PDB) codes are also given for available proteins. Different methods and experimental parameters, for example, affinity, dissociation constant, IC50, activity etc. are given in the database. Further, the database provides the numerical experimental value for each residue (or mutant) in a protein. The experimental data are collected from the literature both by searching the journals as well as with the keyword search at PUBMED. In addition, complete reference is given with journal citation and PMID number. TNFunction is cross-linked with the sequence database, Uniprot, structural database, PDB, and literature database, PubMed. The WWW interface enables users to search data based on various terms with different display options for outputs. functional residue, active sites, binding affinity, dissociation constant, membrane protein, protein data bank, protein sequence database, protein sequence motif, protein uniprot, sequence structure function relationship of membrane proteins, maximal velocity of transport has parent organization: National Institute of Advanced Industrial Science and Technology THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-08632, nif-0000-06665, SCR_007057 SCR_007058 TMFunction Database 2026-08-11 09:41:30 1
GOtcha
 
Resource Report
Resource Website
1+ mentions
GOtcha (RRID:SCR_005790) GOtcha service resource, analysis service resource, data analysis service, production service resource GOtcha provides a prediction of a set of GO terms that can be associated with a given query sequence. Each term is scored independently and the scores calibrated against reference searches to give an accurate percentage likelihood of correctness. These results can be displayed graphically. Why is GOtcha different to what is already out there and why should you be using it? * GOtcha uses a method where it combines information from many search hits, up to and including E-values that are normally discarded. This gives much better sensitivity than other methods. * GOtcha provides a score for each individual term, not just the leaf term or branch. This allows the discrimination between confident assignments that one would find at a more general level and the more specific terms that one would have lower confidence in. * The scores GOtcha provides are calibrated to give a real estimate of correctness. This is expressed as a percentage, giving a result that non-experts are comfortable in interpreting. * GOtcha provides graphical output that gives an overview of the confidence in, or potential alternatives for, particular GO term assignments. The tool is currently web-based; contact David Martin for details of the standalone version. Platform: Online tool function, protein, prediction, genome, annotation, gene, statistical analysis is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: University of Dundee; Scotland; United Kingdom
Wellcome Trust 060269;
European Union fifth framework QLRI-CT-2000-00127
PMID:15550167 Free for academic use nlx_149269 http://www.compbio.dundee.ac.uk/Software/GOtcha/gotcha.html SCR_005790 2026-08-11 09:41:19 3
Enzyminer.
 
Resource Report
Resource Website
1+ mentions
Enzyminer. (RRID:SCR_006241) service resource, data or information resource, database, production service resource EnzyMiner automatically identifies the PubMed abstracts that contain information on the impact of a protein level mutation on the stability or the activity of a given enzyme. For querying EnzyMiner, please choose an enzyme from the list and specify if you are interested in disease related abstracts or non-disease related abstracts. For disease related abstracts, the mutation list and direct links to the abstracts will be displayed. For those abstracts that are related to non-diseases, in addition to having the mutation list, the abstracts are also categorized into two groups. These two groups determine whether the mutation has an effect on the enzyme''s stability or functionality. If your target enzyme is not in the list, please write the enzyme name to the query box. We will run the EnzyMiner for the desired enzyme and add the results to our database. EnzyMiner has been developed by Computational Biology Lab of Sabanci University. has parent organization: Sabanci University; Istanbul; Turkey PMID:19758466 nif-0000-06673 SCR_006241 2026-08-11 09:41:22 2
PANOGA
 
Resource Report
Resource Website
1+ mentions
PANOGA (RRID:SCR_006242) PANOGA service resource, analysis service resource, data analysis service, production service resource A web server to devise functionally important pathways through the identification of single nucleotide polymorphism (SNP)-targeted genes within these pathways. The strength of the methodology stems from its multidimensional perspective, where evidence from the following five resources is combined: (i) genetic association information obtained through GWAS, (ii) SNP functional information, (iii) protein-protein interaction network, (iv) linkage disequilibrium and (v) biochemical pathways. single nucleotide polymorphism, genome-wide association study, pathway, function, gene, genetic association, protein-protein interaction network, linkage disequilibrium, protein-protein interaction is listed by: OMICtools
has parent organization: Sabanci University; Istanbul; Turkey
PMID:24413675 Free, Public, Free for academic use, (source code upon request) OMICS_02238 SCR_006242 Pathway and Network-Oriented GWAS Analysis, Pathway and Network Oriented GWAS (Genome-Wide Association Study) Analysis, Pathway and Network Oriented GWAS Analysis 2026-08-11 09:41:18 7

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