Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
NOPAR Resource Report Resource Website 1+ mentions |
NOPAR (RRID:SCR_009246) | NOPAR | software application, software resource | Software application for non-parametric linkage and association tests primarily for a quantitative trait (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, (sunos) | is listed by: Genetic Analysis Software | nlx_154414 | SCR_009246 | 2026-09-19 12:58:02 | 1 | |||||||||
|
HTR Resource Report Resource Website 1+ mentions |
HTR (RRID:SCR_009241) | HTR | software application, software resource | Software application for haplotype association mapping using unrelated individuals; fixed and sliding window analysis; overall tests and tests for individual haplotype effects (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, bash shell, ms-windows, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154402, biotools:htr | https://bio.tools/htr | SCR_009241 | Haplotype Trend Regression | 2026-09-19 12:58:02 | 1 | |||||||
|
MAPL Resource Report Resource Website 10+ mentions |
MAPL (RRID:SCR_009278) | MAPL | software application, software resource | Software programs that allow a user to get results on segregation ratio, linkage test, recombination value, grouping of markers, ordering of markers by metric multidimensional scaling, drawing map and graphical genotype. ALso QTL analysis by interval mapping and ANOVA are possible. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic, (v5, professional), ms-windows, (95/98) | is listed by: Genetic Analysis Software | nlx_154459 | SCR_009278 | MAPping and QTL analysis | 2026-09-19 12:58:03 | 16 | ||||||||
|
MAPDRAW Resource Report Resource Website 50+ mentions |
MAPDRAW (RRID:SCR_009276) | MAPDRAW | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that draws genetic linkage maps on PC same as what MAPMAKER does on Mac. (entry from Genetic Analysis Software) | gene, genetic, genomic, microsoft visual basic, excel macro, ms-windows | is listed by: Genetic Analysis Software | PMID:15639879 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154457 | SCR_009276 | 2026-09-19 12:58:03 | 98 | |||||||
|
MIDAS Resource Report Resource Website 100+ mentions |
MIDAS (RRID:SCR_009274) | MIDAS | software application, software resource | Software application for analysis and visualisation of interallelic disequilibrium between multiallelic markers (entry from Genetic Analysis Software) | gene, genetic, genomic, python, ms-windows, (2000/xp), linux, macos | is listed by: Genetic Analysis Software | nlx_154479 | SCR_009274 | Multiallelic Interallelic Disequilibrium Analysis Software | 2026-09-19 12:58:03 | 320 | ||||||||
|
MAPCHART Resource Report Resource Website 1000+ mentions |
MAPCHART (RRID:SCR_009273) | MAPCHART | software application, software resource | Software application that produces charts of genetic linkage and QTL data. The charts are composed of a sequence of vertical bars representing the linkage groups or chromosomes. On these bars the positions of loci are indicated, and next to the bars QTL intervals and QTL graphs can be shown. MapChart reads the linkage information (i.e. the locus and QTL names and their positions) from text files. Many options to adapt the charts to different purposes. Can produce graphic files (enhanced windows metafile format) which can be enhanced with other MS-Windows software. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windows, (95/98/me/nt4.0/2000) | is listed by: Genetic Analysis Software | nlx_154454 | SCR_009273 | Windows software for the graphical presentation of linkage maps and QTLs | 2026-09-19 12:58:03 | 1436 | ||||||||
|
MAMA Resource Report Resource Website 50+ mentions |
MAMA (RRID:SCR_009270) | MAMA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154450 | SCR_009270 | Multivariate Association Mapping Algorithms | 2026-09-19 12:58:03 | 96 | ||||||||
|
MADMAPPER Resource Report Resource Website 10+ mentions |
MADMAPPER (RRID:SCR_009267) | MADMAPPER | software application, software resource | Suite of Python scripts for quality control of genetic markers, group analysis and inference of linear order of markers on linkage groups. MadMapper_RECBIT analyses raw marker scores for recombinant inbred lines. MadMapper_RECBIT generates pairwise distance scores for all markers, clusters based on pairwise distances, identifies genetic bins, assigns new markers to known linkage groups, validates allele calls, and assigns quality classes to each marker based on several criteria and cutoff values. MadMapper_XDELTA utilizes new algorithm, Minimum Entropy Approach and Best-Fit Extension, to infer linear order of markers. MadMapper_XDELTA analyzes two-dimensional matrices of all pairwise scores and finds best map that has minimal total sum of differences between adjacent cells (map with lowest entropy). MadMapper is freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154447 | SCR_009267 | 2026-09-19 12:58:02 | 13 | |||||||||
|
Marker And Gene Interpolation and Correlation Resource Report Resource Website 10+ mentions |
Marker And Gene Interpolation and Correlation (RRID:SCR_009268) | MaGIC | software application, software resource | Software program to generate targeted marker sets for genome-wide association studies. | gene, genetic, genomic, microsoft visual foxpro, windows |
is listed by: Genetic Analysis Software has parent organization: King's College London; London; United Kingdom |
PMID:15597550 | Free, Public | nlx_154448 | SCR_009268 | Marker And Gene Interpolation and Correlation | 2026-09-19 12:58:02 | 10 | ||||||
|
LTSOFT Resource Report Resource Website 1+ mentions |
LTSOFT (RRID:SCR_009266) | LTSOFT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A software suite designed to more powerfully leverage clinical-covariates such as age, bmi, smoking status, and gender when conducting case-control association studies. Including these covariates in standard regression models is not only suboptimal, but can in many instances reduce power. LTSOFT employs a liability threshold model approach that takes advantage of known epidemiological results to better model the covariates'' relationship to the phenotype of interest (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154445 | SCR_009266 | 2026-09-19 12:58:02 | 3 | ||||||||
|
LRP Resource Report Resource Website 1+ mentions |
LRP (RRID:SCR_009263) | LRP | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154442 | SCR_009263 | Linkage Report Program | 2026-09-19 12:58:02 | 1 | ||||||||
|
L-POP Resource Report Resource Website 1+ mentions |
L-POP (RRID:SCR_009262) | L-POP | software application, software resource | Software application that detects population stratification in samples of unrelated individuals for whom a number of unlinked genotypes have been measured. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154441 | SCR_009262 | 2026-09-19 12:58:02 | 2 | ||||||||
|
LOKI Resource Report Resource Website 10+ mentions |
LOKI (RRID:SCR_009260) | LOKI | software application, software resource | Software program for analyses a quantitative trait observed on large pedigrees using Markov chain Monte Carlo multipoint linkage and segregation analysis. The trait may be determined by multiple loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (solaris 2.5, osf1 3.2, and others), linux, (2.0.30) | is listed by: Genetic Analysis Software | nlx_154439 | SCR_009260 | PANGAEA | 2026-09-19 12:58:02 | 30 | ||||||||
|
PROFILER Resource Report Resource Website 1000+ mentions |
PROFILER (RRID:SCR_009339) | PROFILER | software application, software resource | A flexible software tool to generate the probability distribution of joint multilocus genotypes defined by sets of individuals within the pedigree and sets of markers within the framework map. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, linux, unix, solaris |
is listed by: Genetic Analysis Software is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154552 | SCR_009339 | 2026-09-19 12:58:04 | 1295 | ||||||||
|
PREPLINK Resource Report Resource Website |
PREPLINK (RRID:SCR_009335) | PREPLINK | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154547 | SCR_009335 | MAKE PEDfiles | 2026-09-19 12:58:04 | 0 | ||||||||
|
PREST Resource Report Resource Website 10+ mentions |
PREST (RRID:SCR_009336) | PREST | software application, software resource | Software program that detects pedigree errors in general outbred pedigrees by use of genome-screen data. When a potential pedigree error is detected, our companion program, ALTERTEST, determines which relationships are compatible with the observed genotype data. Both programs are freely available on the web. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154548 | SCR_009336 | Pedigree RElationship Statistical Test | 2026-09-19 12:58:04 | 11 | ||||||||
|
POWTEST Resource Report Resource Website |
POWTEST (RRID:SCR_009334) | POWTEST | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Excel spreadsheet to calculate power of affected sibpairs and TDT analyses (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154546 | SCR_009334 | 2026-09-19 12:58:04 | 0 | ||||||||
|
POOL STR Resource Report Resource Website |
POOL STR (RRID:SCR_009331) | POOL_STR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154541 | SCR_009331 | POOLing alleles of Short Tandem Repeat markers | 2026-09-19 12:58:04 | 0 | |||||||
|
MLR-TAGGING Resource Report Resource Website |
MLR-TAGGING (RRID:SCR_009299) | MLR-TAGGING | software application, software resource | Software application that can be used for tagging SNP selection and genotype prediction (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154490 | SCR_009299 | Multivariate Linear Regression TAGGING | 2026-09-19 12:58:03 | 0 | ||||||||
|
POWERMARKER Resource Report Resource Website 500+ mentions |
POWERMARKER (RRID:SCR_009332) | POWERMARKER | software application, software resource | A comprehensive set of statistical methods for genetic marker data analysis, designed especially for SSR/SNP data analysis. PowerMarker builds a powerful user interface around both new and traditional statistical methods for population genetic analysis. See analysis to check out the versatility of PowerMarker. PowerMarker is also a 2D Viewer - which was used intensively for visualizing linkage disequilibria results. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154544 | SCR_009332 | 2026-09-19 12:58:04 | 639 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
