Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/dmis-lab/biobert
Pre-trained biomedical language representation model for biomedical text mining. This repository provides fine-tuning codes of BioBERT, language representation model for biomedical domain, especially designed for biomedical text mining tasks such as biomedical named entity recognition, relation extraction, question answering, etc.
Proper citation: BioBERT (RRID:SCR_017547) Copy
https://github.com/cobilab/geco3/
Software tool as DNA compressor that uses neural network to do mixing of experts.
Proper citation: GeCo3 (RRID:SCR_018877) Copy
Software tool for creating solid 3D CAD objects. Used for creating 3D models focusing on CAD aspects of 3D modeling of machine parts. Reads in script file that describes object and renders 3D model from this script file.
Proper citation: OpenSCAD (RRID:SCR_018870) Copy
Open source software application that enables services for online surveys. Provides advanced support for all steps of web survey process. Conduct research and analysis from beginning to end.
Proper citation: 1KA (RRID:SCR_019283) Copy
https://github.com/liqiwei2000/BayesEpiModels
Software tool for accessing performance of different epidemiological models, including both growth and compartmental models, in Bayesian framework.
Proper citation: BayesEpiModels (RRID:SCR_019291) Copy
http://www.agriculturalsoftwareconsultants.com/mixitwin
Professional feed formulation software for Windows 10 and Macs by Agricultural Software Consultants Inc. Complete feed formulation solution for professional nutritionists and feed producers. Software offers ingredient databases for various domesticated and wild species.
Proper citation: MixitWin (RRID:SCR_017553) Copy
https://bioconductor.org/packages/EpiDISH/
Software R package provides tools to infer proportions of priori known cell-types present in sample representing mixture of such cell-types. Comparison of reference based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Proper citation: EpiDISH R package (RRID:SCR_018004) Copy
Software tool as free color blindness simulator for Windows, Mac and Linux. Design for Color Impaired. Takes guesswork out of designing for color blindness by showing you in real time what people with common color vision impairments will see.Color Oracle is open source, available on GitHub for Mac and Windows/Java.
Proper citation: Color Oracle (RRID:SCR_018400) Copy
https://github.com/lufuhao/HomoeologPrimer
Software tool as script used to design primers for homoeologs, to amplify either homoeolog specific or all homoeologs.
Proper citation: HomoeologPrimer (RRID:SCR_017559) Copy
https://www.google.com/sheets/about/
Spreadsheet program included as part of free, web-based software office suite offered by Google within its Google Drive service. Service also includes Google Docs and Google Slides, word processor and presentation program respectively.
Proper citation: Google Sheets (RRID:SCR_017679) Copy
https://www.molinspiration.com/
Broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depiction, molecular database tools supporting substructure and similarity searches. Molinspiration tools are platform independent and may be run on any PC, Mac, UNIX or LINUX machine. Software is distributed in form of engines, which may be used as stand-alone computational engines, used to power web-based tools, or incorporated into larger in-house Java applications.
Proper citation: Molinspiration (RRID:SCR_018525) Copy
https://CRAN.R-project.org/package=meta
Software general R package providing standard methods for meta analysis.
Proper citation: meta (RRID:SCR_019055) Copy
https://www.sqlite.org/index.html
Relational database management system contained in C library. SQLite is not client server database engine but it is embedded into the end program.
Proper citation: SQLite (RRID:SCR_017672) Copy
https://github.com/a-ludi/dentist
Software as automated pipeline method to close gaps in assemblies with long reads. Used to close assembly gaps using long reads at high accuracy.
Proper citation: DENTIST (RRID:SCR_021856) Copy
https://imbalanced-learn.org/stable/
Software Python package to tackle curse of imbalanced datasets in machine learning.Offers number of re-sampling techniques commonly used in datasets showing strong between class imbalance.
Proper citation: imblearn (RRID:SCR_021698) Copy
https://pypi.org/project/peppy/
Software python package for reading Portable Encapsulated Projects or PEPs in python.
Proper citation: peppy (RRID:SCR_021078) Copy
https://github.com/zhuangjun1981/corticalmapping
Software package for basic visual stimulation, imaging analysis, plotting, and cell visual response properties analysis functionality for calcium imaging.
Proper citation: corticalmapping (RRID:SCR_021871) Copy
https://pypi.org/project/eido/
Software validation tool for Portable Encapsulated Projects or PEPs in python.
Proper citation: eido (RRID:SCR_021076) Copy
https://cran.r-project.org/package=CCP
Software R package for significance tests for canonical correlation analysis, including asymptotic tests and Monte Carlo method.
Proper citation: CCP (RRID:SCR_021745) Copy
https://github.com/portugueslab/stytra
Open source software Python package to control stimulation and track behaviour.Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations.
Proper citation: Stytra (RRID:SCR_021500) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within RRID that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
