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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FreeCAD Resource Report Resource Website 100+ mentions |
FreeCAD (RRID:SCR_022535) | software application, software resource | Open source parametric 3D modeler to design real life objects of any size. Parametric modeling allows modify your design by going back into your model history and changing its parameters. | parametric 3D modeler, design real life objects, changing model parameters | Free, Available for download, Freely available | https://github.com/FreeCAD/FreeCAD | SCR_022535 | 2026-08-09 09:07:58 | 126 | ||||||||||
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d-StructMAn Resource Report Resource Website 1+ mentions |
d-StructMAn (RRID:SCR_022534) | d-StructMAn | software application, software resource | Software tool provides annotation of non-synonymous single nucleotide variants in context of structural properties of resulting amino acid changes in corresponding proteins. Improved implementation of StructMAn, shipped in container form and extended to annotation of short in-frame indels and alterations arising as consequence of alternative splicing events. Produces range of structural features by combining information from experimentally resolved structures of many related proteins, which is unique feature of StructMAn family tools. Can also harness all protein structure models stored in AlphaFold Protein Structure Database. | Structural mutation annotation, non-synonymous single nucleotide variants annotation, non-synonymous single nucleotide variants, structural properties, amino acid changes, protein structure | Free, Available for download, Freely available | SCR_022534 | d-Structural Mutation Annotation | 2026-08-09 09:08:24 | 1 | |||||||||
|
Hi5App Resource Report Resource Website |
Hi5App (RRID:SCR_022819) | software application, software resource | Software cross platform mobile application that supports 2D/3D/4D image visualization, multi-morphometry annotation, proofreading, interactive imaging system controlling, and distributed collaboration. | 2D/3D/4D image visualization, multi-morphometry annotation, proofreading, interactive imaging system controlling, distributed collaboration | is used by: BICCN | Free, Available for download, Freely available | SCR_022819 | 2026-08-09 09:08:27 | 0 | ||||||||||
|
What the Phage Resource Report Resource Website |
What the Phage (RRID:SCR_022871) | WtP | software toolkit, software resource | Parallel multitool approach for phage prediction combined with annotation and classification downstream strategy. Used for identification and analysis of phage sequences. Phage identification via nextflow and docker or singularity. | phage prediction, phage sequences analysis, phage sequences prediction | DOI:10.1101/2020.07.24.219899 | Free, Available for download, Freely available | SCR_022871 | 2026-08-09 09:08:25 | 0 | |||||||||
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SurvBenchmark Resource Report Resource Website 1+ mentions |
SurvBenchmark (RRID:SCR_022503) | software toolkit, software resource | Software package for comprehensive benchmarking study of survival analysis methods using both omics data and clinical data. Evaluates diverse collection of survival models for both clinical and omics datasets. | benchmarking study, survival analysis methods, using omics data and clinical data, survival models collection evaluation | Free, Available for download, Freely available | SCR_022503 | 2026-08-09 09:07:57 | 1 | |||||||||||
|
h2o4gpu Resource Report Resource Website 1+ mentions |
h2o4gpu (RRID:SCR_022520) | H2o4GPU | software toolkit, software resource | Interface to H2O4GPU, collection of GPU solvers for machine learning algorithms. | Machine Learning on GPU, H2O4GPU, collection of GPU solvers |
is related to: CRAN is related to: R Project for Statistical Computing |
Free, Available for download, Freely available | https://CRAN.R-project.org/package=h2o4gpu | SCR_022520 | 2026-08-09 09:08:18 | 1 | ||||||||
|
shinythemes Resource Report Resource Website 1+ mentions |
shinythemes (RRID:SCR_022757) | software toolkit, software resource | Software R package Themes for use with Shiny. | Themes for use with Shiny |
is used by: Shiny is listed by: CRAN |
Free, Available for download, Freely available | https://rstudio.github.io/shinythemes/ | SCR_022757 | 2026-08-09 09:08:04 | 1 | |||||||||
|
shinyhelper Resource Report Resource Website 1+ mentions |
shinyhelper (RRID:SCR_022755) | software toolkit, software resource | Software R package to add markdown helpfiles to shiny apps, using modal dialog boxes, with no need to observe each help button separately. | add markdown helpfiles, modal dialog boxes, help button separately |
is listed by: CRAN works with: Shiny |
Free, Available for download, Freely available | SCR_022755 | 2026-08-09 09:08:27 | 1 | ||||||||||
|
BIDS-Matlab Resource Report Resource Website 1+ mentions |
BIDS-Matlab (RRID:SCR_022292) | software toolkit, software resource | Software MATLAB/Octave tools to interact with datasets conforming to Brain Imaging Data Structure format. | Brain Imaging Data Structure, BIDS, Matlab, octave tools, Brain Imaging Data Structure format, dataset Brain Imaging Data Structure format | is related to: Brain Imaging Data Structure (BIDs) | Free, Available for download, Freely available | https://zenodo.org/record/5910585#.YoLwlajMK3B, https://github.com/bids-standard/bids-matlab/tree/v0.1.0 | SCR_022292 | Brain Imaging Data Structure - Matlab | 2026-08-09 09:08:21 | 1 | ||||||||
|
ggforce Resource Report Resource Website 1+ mentions |
ggforce (RRID:SCR_022575) | software toolkit, software resource | Software R package providing missing functionality to ggplot2 through extension system introduced with ggplot2 v2.0.0. | missing functionality, ggplot2, extension system |
is related to: CRAN works with: ggplot2 |
Free, Available for download, Freely available | https://github.com/thomasp85/ggforce/, https://ggforce.data-imaginist.com/ | SCR_022575 | 2026-08-09 09:08:19 | 7 | |||||||||
|
IBD Detection Tool Benchmark Tool Resource Report Resource Website 1+ mentions |
IBD Detection Tool Benchmark Tool (RRID:SCR_022850) | software toolkit, software resource | Software package as open source project benchmarks IBD detection tools with multiple measurements. | project benchmarks, IBD detection, multiple measurements | Free, Available for download, Freely available | SCR_022850 | 2026-08-09 09:08:28 | 1 | |||||||||||
|
Docker based GPU enabled Jupyterlab Resource Report Resource Website 1+ mentions |
Docker based GPU enabled Jupyterlab (RRID:SCR_022695) | software application, software resource | Open source, docker based, and GPU enabled jupyterlab notebook infrastructure that runs on public compute infrastructure of Galaxy Europe for rapid prototyping and developing end-to-end AI projects. Jupyterlab notebook in GPU enabled docker container for machine learning and deep learning. | Jupyterlab, GPU enabled jupyterlab notebook infrastructure, Galaxy Europe, public compute infrastructure | is related to: Jupyter Notebook | DOI:10.1101/2022.07.08.499333 | Free, Available for download, Freely available | biotools:gpu-enabled_docker_container_with_jupyterlab_for_ai | https://bio.tools/gpu-enabled_docker_container_with_jupyterlab_for_ai | SCR_022695 | 2026-08-09 09:08:02 | 2 | |||||||
|
Residue Iteration Decomposition Resource Report Resource Website 1+ mentions |
Residue Iteration Decomposition (RRID:SCR_022174) | RIDE | software toolkit, software resource | Software Matlab based toolbox for temporal decomposition of EEG signal. Used for decomposition, reconstruction, and single trial analysis of event related potentials. | temporal decomposition of EEG signal, EEG, event related potentials, single trial analysis, event related brain potentials, ERP, ERP decomposition method, ERP reconstruction, Latency variability, residue iteration decomposition, single trial analysis | is related to: MATLAB | Hong Kong Baptist University ; Hong Kong Research Grant Council ; National Natural Science Foundation of China ; Germany Hong Kong Joint Research Scheme |
PMID:25455337 | Free, Available for download, Freely available | SCR_022174 | Residue Iteration DEcomposition | 2026-08-09 09:08:11 | 8 | ||||||
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Pi-based Remote Acquisition Technology for Motion Capture Resource Report Resource Website 1+ mentions |
Pi-based Remote Acquisition Technology for Motion Capture (RRID:SCR_022327) | PiRATeMC | software toolkit, software resource | Software data management pipeline for camera synchronization and combined data directories. | OpenBehavior, camera synchronization, combined data directories, data management |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture project |
DOI:10.1101/2021.07.23.453577 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/piratemc/ | SCR_022327 | 2026-08-09 09:07:52 | 1 | |||||||
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Joint Acquisition, Recording and Voxel based Inference System Resource Report Resource Website 1+ mentions |
Joint Acquisition, Recording and Voxel based Inference System (RRID:SCR_022723) | JARVIS | software toolkit, software resource | Software markerless 3D motion capture toolbox. Used for capturing precise 3D motion. | markerless 3D motion capture, capturing precise 3D motion | Free, Available for download, Freely available | https://github.com/JARVIS-MoCap | SCR_022723 | JARVIS-MoCap | 2026-08-09 09:08:26 | 1 | ||||||||
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zmax_edf_merge_converter Resource Report Resource Website |
zmax_edf_merge_converter (RRID:SCR_022567) | software application, software resource | Software tool for comprehensive conversion of folder with Hypnodyne zmax EDF files into merged European Data Format. | hypnodyne, Zmax, converter, EDF, merge, python, windows | Free, Available for download, Freely available | SCR_022567 | 2026-08-09 09:07:58 | 0 | |||||||||||
|
ordinal Resource Report Resource Website 1+ mentions |
ordinal (RRID:SCR_022856) | software toolkit, software resource | Software R package implementation of cumulative link models also known as ordered regression models, proportional odds models, proportional hazards models for grouped survival times and ordered logit/probit models. | ordered categorical data, cumulative link models, ordered regression models, proportional odds models, proportional hazards models, grouped survival times | is listed by: CRAN | Free, Available for download, Freely available | SCR_022856 | Regression Models for Ordinal Data | 2026-08-09 09:08:25 | 9 | |||||||||
|
Coselens Resource Report Resource Website 1+ mentions |
Coselens (RRID:SCR_022578) | software toolkit, software resource | Software R package to detect gene level differential selection between two groups of samples.Used for calculation of excess of non synonymous mutations between two groups. | detect gene level differential selection, selection between two groups of samples, calculation of excess mutation, non synonymous mutations, | Spanish Ministry of Science | DOI:10.1101/2022.01.10.475617 | Free, Available for download, Freely available | SCR_022578 | COnditional SELection on the Excess of NonSynonymous Substitutions | 2026-08-09 09:08:19 | 3 | ||||||||
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bio_contrast_subgraph Resource Report Resource Website 1+ mentions |
bio_contrast_subgraph (RRID:SCR_022853) | software toolkit, software resource | Software package for implementing algorithms proposed in Lanciano et al. "Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data". | , Comparing Homogeneous and Heterogeneous Networks, Omics Data | Free, Available for download, Freely available | SCR_022853 | 2026-08-09 09:08:28 | 1 | |||||||||||
|
ISGPRE Resource Report Resource Website 1+ mentions |
ISGPRE (RRID:SCR_022730) | software toolkit, software resource | Software package for predicting interferon stimulated human genes. | predicting interferon stimulated human genes, interferon stimulated human genes, human genes | DOI:10.1101/2021.10.08.463622 | Free, Available for download, Freely available | http://isgpre.cvr.gla.ac.uk/ | SCR_022730 | 2026-08-09 09:08:03 | 1 |
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