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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ThermoFisher Connect Platform Resource Report Resource Website 50+ mentions |
ThermoFisher Connect Platform (RRID:SCR_023441) | software application, software resource | Platform for connecting people, software, data, and equipment. Helps integrating software, instruments, and data across your lab’s existing ecosystem. Provides: workflows guide users through processes involving multiple systems;Centralized access to Thermo Fisher Scientific instrument service and expertise;Connectivity to monitor and maintain instruments and equipment;Granular data sharing controls to enhance collaboration;Secure environment. | ThermoFisher, integrating software, integrating instruments, integrating data, laboratory ecosystem, | Restricted | SCR_023441 | Connect Platform | 2026-08-09 09:08:36 | 55 | ||||||||||
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Generate tools Resource Report Resource Website 1+ mentions |
Generate tools (RRID:SCR_023042) | software toolkit, software resource | Software pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas. Tools for handling and analysing data with ambiquities. | HLA data analysis, handling and analysing data with ambiquities, handling and analysing data, data with ambiquities, | PMID:24738646 | Free, Available for download, Freely available | SCR_023042 | HLA-net GENE[RATE], Gene[rate] tools | 2026-08-09 09:08:29 | 1 | |||||||||
|
Anipose Resource Report Resource Website 1+ mentions |
Anipose (RRID:SCR_023041) | software toolkit, software resource | Software package for 3D pose estimation. Uses DeepLabCut for 2D tracking and uses triangulation methods to project pose estimations into three dimensions.Toolkit for robust markerless 3D pose estimation. | OpenBehavior, 3D pose estimation, project pose estimations into three dimensions, markerless 3D pose estimation |
uses: DeepLabCut is listed by: OpenBehavior is related to: DeepLabCut Project |
NINDS F31NS115477; NINDS R00 NS088193; NINDS DP2NS105555; NINDS R01NS111479; NINDS U19NS112959; Searle Scholars Program ; Pew Charitable Trusts ; McKnight Foundation ; Sloan Research Fellowship ; Washington Research Foundation ; NINDS R01NS102333; NINDS U19NS104655; New York Stem Cell Foundation |
PMID:34592148 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=Anipose | SCR_023041 | 2026-08-09 09:08:11 | 4 | |||||||
|
xAtlas Resource Report Resource Website 1+ mentions |
xAtlas (RRID:SCR_022987) | software application, software resource | Software tool as variant caller for SNVs and small indels. Implemented as software application written in C++ . | Single nucleotide variants, variant caller, SNVs, small indels | has parent organization: Baylor College of Medicine Human Genome Sequencing Center | Free, Available for download, Freely available | SCR_022987 | 2026-08-09 09:08:10 | 3 | ||||||||||
|
Starr Life Sciences MouseOx Plus Resource Report Resource Website 10+ mentions |
Starr Life Sciences MouseOx Plus (RRID:SCR_022984) | software application, software resource | Software is part of MouseOx Plus pulse oximeter system. | Starr Life Sciences Corp., MouseOx Plus oximeter system, pulse oximeter | Free, Available to download | https://www.starrlifesciences.com/product/pulse-oximetry-software/ | SCR_022984 | MouseOx Plus, MOUSEOX PLUS 2.0 | 2026-08-09 09:08:28 | 11 | |||||||||
|
Mouse Behavioral Analysis Toolbox Resource Report Resource Website 1+ mentions |
Mouse Behavioral Analysis Toolbox (RRID:SCR_023291) | MouBeAT | software toolkit, software resource | Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). | OpenBehavior, behavioral tests, behavioral tests analysis, tests in rodents |
uses: ImageJ is listed by: OpenBehavior |
Ministry of Science and Innovation ; Spain ; European Regional Development Fund |
PMID:30245618 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/moubeat/ | SCR_023291 | 2026-08-09 09:08:35 | 1 | ||||||
|
findmaxima2d Resource Report Resource Website 1+ mentions |
findmaxima2d (RRID:SCR_023332) | software application, software resource | Software Python 2D Maxima finding algorithm. Re-implementation of Java plugin for ImageJ/Fiji. | Python, 2D Maxima finding algorithm, Java plugin | Free, Available for download, Freely available | https://github.com/dwaithe/MaximaFinder/tree/master/findmaxima2d | SCR_023332 | 2026-08-09 09:08:36 | 1 | ||||||||||
|
vcfR Resource Report Resource Website 1+ mentions |
vcfR (RRID:SCR_023453) | software toolkit, software resource | Software R package to read, write, manipulate and analyze variant call format data. Facilitates easy manipulation of variant call format (VCF) data. | Manipulate and visualize VCF data, variant call format data, VCF data, extract data matrices, genomic data visualization, VCF file, variant call format files, | is listed by: CRAN | Free, Available for download, Freely available | https://knausb.github.io/vcfR_documentation/, https://github.com/knausb/vcfR, https://cran.r-project.org/web/packages/vcfR/vignettes/intro_to_vcfR.html, | SCR_023453 | variant call format in R | 2026-08-09 09:08:36 | 9 | ||||||||
|
poppr Resource Report Resource Website 10+ mentions |
poppr (RRID:SCR_023452) | software toolkit, software resource | Software R package for analysis of populations with mixed modes of sexual and clonal reproduction. Used for genetic analysis of populations with mixed reproduction. | genetic analysis, mixed reproduction, mixed reproduction populations, mixed modes, sexual and clonal reproduction, | US Department of Agriculture ; USDA National Institute of Food and Agriculture ; USDA ARS Floriculture Nursery Initiative ; USDA-Forest Service Forest Health Monitoring Program |
DOI:10.7717/peerj.281 DOI:10.3389/fgene.2015.00208 |
Free, Available for download, Freely available | https://CRAN.R-project.org/package=poppr, https://github.com/grunwaldlab/poppr/ | SCR_023452 | 2026-08-09 09:08:39 | 14 | ||||||||
|
Computing Chance Corrected Agreement Coefficients Resource Report Resource Website 1+ mentions |
Computing Chance Corrected Agreement Coefficients (RRID:SCR_023176) | irrCAC | software toolkit, software resource | Software R package to calculate various chance-corrected agreement coefficients among 2 or more raters. Among CAC coefficients covered are Cohen's kappa, Conger's kappa, Fleiss' kappa, Brennan-Prediger coefficient, Gwet's AC1/AC2 coefficients, and Krippendorff's alpha. Multiple sets of weights are proposed for computing weighted analyses. | CAC coefficients, chance-corrected agreement coefficients calculations, computing weighted analyses | is listed by: CRAN | Free, Available for download, Freely available | SCR_023176 | Computing Chance-Corrected Agreement Coefficients | 2026-08-09 09:08:32 | 2 | ||||||||
|
Intraclass Correlations for Quantifying Inter Rater Reliability Resource Report Resource Website 1+ mentions |
Intraclass Correlations for Quantifying Inter Rater Reliability (RRID:SCR_023175) | irrICC | software toolkit, software resource | Software R package to calculate various intraclass correlation coefficients. Used to quantify inter-rater and intra-rater reliability. | intraclass correlation coefficients calculation, correlation coefficient | is listed by: CRAN | Free, Available for download, Freely available | SCR_023175 | Intraclass Correlations for Quantifying Inter-Rater Reliability | 2026-08-09 09:08:32 | 1 | ||||||||
|
Google Forms Resource Report Resource Website 10+ mentions |
Google Forms (RRID:SCR_023174) | software application, software resource | Software for creating surveys and questionnaires. | creating surveys, creating questionnaires | Free, Freely available | SCR_023174 | 2026-08-09 09:08:13 | 40 | |||||||||||
|
Tonkaz Resource Report Resource Website 1+ mentions |
Tonkaz (RRID:SCR_023206) | software application, software resource | Software CLI tool to verify workflow reproducibility. | workflow reproducibility, workflow reproducibility verification | DOI:10.1101/2022.10.11.511695 | Free, Available for download, Freely available | SCR_023206 | 2026-08-09 09:08:33 | 1 | ||||||||||
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SURVIVOR Resource Report Resource Website 10+ mentions |
SURVIVOR (RRID:SCR_022995) | SURVIVOR | software toolkit, software resource | Software tool set for simulating and evaluating SVs, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize SVs. Used for for SV simulation, comparison and filtering. | Structural Variant, simulating and evaluating SVs, merging and comparing SVs, reformat or summarize SVs, | Swiss National Science Foundation ; National Science Foundation DBI-1350041; NHGRI R01-HG006677; Wellcome Trust Senior Investigator Award ; Royal Society Wolfson Research Merit Award ; EPSRC Centre for Doctoral Training studentship at UCL CoMPLEX |
PMID:28117401 | Free, Available for download, Freely available | SCR_022995 | StructURal Variant majorIty VOte | 2026-08-09 09:08:30 | 16 | |||||||
|
Yevis cli Resource Report Resource Website 1+ mentions |
Yevis cli (RRID:SCR_023204) | software application, software resource | Software CLI tool to support building and maintaining Yevis workflow registry. | Yevis workflow registry, Yevis, workflow registry with automated quality control, | is related to: Yevis web | Free, Available for download, Freely available | https://sapporo-wes.github.io/yevis-cli/getting_started | SCR_023204 | Yevis-cli | 2026-08-09 09:08:13 | 2 | ||||||||
|
Rtrack Resource Report Resource Website |
Rtrack (RRID:SCR_023025) | software toolkit, software resource | Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video. | OpenBehavior, process raw spatial tracking data, calculate behavioural strategies, spatial tracking experiments, Morris water maze |
is listed by: OpenBehavior is listed by: CRAN |
DOI:10.1101/2020.02.27.967372v1.full.pdf | Free, Available for download, Freely available | https://rupertoverall.net/Rtrack/, https://edspace.american.edu/openbehavior/?s=Rtrack | SCR_023025 | 2026-08-09 09:08:29 | 0 | ||||||||
|
HOMA2 calculator Resource Report Resource Website 50+ mentions |
HOMA2 calculator (RRID:SCR_023419) | software application, software resource | Software tool used to calculate Homeostasis Model Assessment which takes account of variations in hepatic and peripheral glucose resistance, increases in insulin secretion curve for plasma glucose concentrations and contribution of circulating proinsulin. Provides access to HOMA2 model for researchers who wish to use model derived estimates of %B and %S, rather than linear approximations. | calculate Homeostasis Model Assessment, Homeostasis Model Assessment, HOMA calculator | is related to: iHOMA2 | Free, Available for download, Freely available | SCR_023419 | HOMA Calculator | 2026-08-09 09:08:38 | 81 | |||||||||
|
Vitrea Read Diagnostic Viewer Resource Report Resource Website 1+ mentions |
Vitrea Read Diagnostic Viewer (RRID:SCR_023418) | software application, software resource | Software application providing tools and features that may be used for general purpose radiological viewing and reading of image data from various imaging modalities, clinical review and performs functions of digital image processing, measurement, communications and storage. | Canon Medical Informatics, Inc., Diagnostic Viewer, radiological image viewing and reading, image data, digital image processing, | Restricted | https://www.vitalimages.com/enterprise-imaging-solution/enterprise-viewer/ | SCR_023418 | Diagnostic Viewer, Vitrea EasyViz Diagnostic Viewer, Vitrea Read, Vitrea EasyViz | 2026-08-09 09:08:15 | 1 | |||||||||
|
Merqury Resource Report Resource Website 50+ mentions |
Merqury (RRID:SCR_022964) | software toolkit, software resource | Software toolkit for reference free quality, completeness, and phasing assessment for genome assemblies. Genome assembly quality evaluation based on k-mers. | reference free quality, completeness, phasing assessment, genome assemblies, quality evaluation based on k-mers | NHGRI | PMID:32928274 | Free, Available for download, Freely available | SCR_022964 | 2026-08-09 09:08:29 | 72 | |||||||||
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GetOrganelle Resource Report Resource Website 100+ mentions |
GetOrganelle (RRID:SCR_022963) | software toolkit, software resource | Software toolkit to assembly of organelle genome from genomic skimming data. Used for accurate de novo assembly of organelle genomes. | Organelle genome assembly, genomic skimming data, organelle genomes, de novo assembly | Chinese Academy of Sciences ; National Natural Science Foundation of China |
PMID:32912315 | Free, Available for download, Freely available | SCR_022963 | 2026-08-09 09:08:27 | 256 |
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