Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
KBibTeX Resource Report Resource Website |
KBibTeX (RRID:SCR_024048) | software application, software resource | Software tool as bibliography editor for KDE. Used in conjunction with Kile. BibTeX editor for KDE. KBibTeX's primary file format is BibTeX as known from LaTeX, but other formats such as RIS, PDF, or RTF can be imported and exported. | bibliography editor for KDE, bibliography editor, BibTeX editor for KDE, | is listed by: Debian | Restricted | https://sources.debian.org/src/kbibtex/ | SCR_024048 | kbibtex | 2026-08-09 09:08:21 | 0 | ||||||||
|
Microsoft PowerPoint Resource Report Resource Website 100+ mentions |
Microsoft PowerPoint (RRID:SCR_023631) | software application, software resource | Presentation software developed by Microsoft Corporation. Part of Microsoft Office suite. Used for creating slideshows and delivering presentations. | Microsoft Corporation, Microsoft Office, creating slideshows, delivering presentations, presentation software, | Restricted | SCR_023631 | 2026-08-09 09:08:17 | 115 | |||||||||||
|
Reads2Map Resource Report Resource Website 1+ mentions |
Reads2Map (RRID:SCR_023593) | software toolkit, software resource | Software package as collection of WDL workflows to build linkage maps from sequencing reads. WDL workflows to build genetic maps from sequencing reads. | Genetic Map, Linkage analysis, Variant Calling, Dosage Calling | National Council for Scientific and Technological Development 313269/2021-1; USDA National Institute of Food and Agriculture (NIFA); 2020-51181-32156 Bill and Melinda Gates Foundation; OPP1213329 European Union’s Horizon 2020 |
DOI:10.1101/2022.11.24.517847 | Free, Available for download, Freely available | SCR_023593 | 2026-08-09 09:08:42 | 1 | |||||||||
|
Zonation 5 Resource Report Resource Website 1+ mentions |
Zonation 5 (RRID:SCR_023745) | software application, software resource | Spatial prioritization software used to identify priority areas to support conservation planning, land use planning, ecological impact avoidance and other similar tasks. | Spatial prioritization, identify priority areas, support conservation planning, land use planning, ecological impact avoidance, | Free, Available for download, Freely available | https://github.com/zonationteam/Zonation5 | SCR_023745 | Zonation 5 v1.0 | 2026-08-09 09:08:45 | 1 | |||||||||
|
DESDEO Resource Report Resource Website 1+ mentions |
DESDEO (RRID:SCR_023502) | software toolkit, software resource | Software Python framework for interactive multiobjective optimization methods. | interactive multiobjective optimization, optimization methods, | DOI:10.1109/ACCESS.2021.3123825 | Free, Available for download, Freely available | https://desdeo.it.jyu.fi/, https://desdeo.readthedocs.io/en/latest/ | SCR_023502 | Decision Support for computationally Demanding Optimization | 2026-08-09 09:08:37 | 1 | ||||||||
|
clusterSim Resource Report Resource Website 10+ mentions |
clusterSim (RRID:SCR_023743) | software toolkit, software resource | Software R package used for searching for optimal clustering procedure for data set. | searching for optimal clustering procedure for data set, optimal clustering procedure, data set clustering procedure, | is listed by: CRAN | Free, Freely available | SCR_023743 | 2026-08-09 09:08:40 | 21 | ||||||||||
|
Aeskulap Resource Report Resource Website |
Aeskulap (RRID:SCR_023960) | software application, software resource | Software application as medical image viewer.Able to load series of special images stored in DICOM format for review. Able to query and fetch DICOM images from archive nodes (also called PACS) over the network. Designed to run under Linux. | medical image viewer, Digital Imaging and Communications in Medicine, DICOM, DICOM viewer, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/aeskulap/ | SCR_023960 | Aeskulap - DICOM Viewer, aeskulap | 2026-08-09 09:08:43 | 0 | ||||||||
|
Gigapixel AI Resource Report Resource Website 1+ mentions |
Gigapixel AI (RRID:SCR_023684) | software application, software resource | Software to increase image resolution. Gigapixel AI’s neural networks are continuously trained on sample images to increase resolution of different subjects like portraits, wildlife, landscapes, architecture and image types like DSLR, web/compressed, CG. | Topaz Labs, increase image resolution, image resolution, | Restricted | SCR_023684 | Gigapixel AI Image Enhancement Software | 2026-08-09 09:08:18 | 1 | ||||||||||
|
Frictionless Data Resource Report Resource Website 1+ mentions |
Frictionless Data (RRID:SCR_023713) | software toolkit, software resource | Open source software package for building data infrastructure including data management, data integration, data flows, etc. Includes various data standards and provides software to work with data. | building data infrastructure, data management, data integration, data flows, data standards information, | Free, Available for download, Freely available | https://github.com/frictionlessdata | SCR_023713 | 2026-08-09 09:08:45 | 7 | ||||||||||
|
ABI-expression-data-generator Resource Report Resource Website |
ABI-expression-data-generator (RRID:SCR_023834) | software application, software resource | Software to download expression data from Allen Mouse Brain data portal ABI. This script will query database, download available data, convert it from the raw/mhd format to NIfTI, and register it to standard space. Package-manager-friendly archive of gene expression maps registered in SMRI standard space from the Allen Mouse Brain Atlas. | Allen Mouse Brain Atlas, gene expression maps, expression data, standard space registration, SMRI standard space, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023834 | 2026-08-09 09:08:19 | 0 | ||||||||||
|
Rprs Resource Report Resource Website 1+ mentions |
Rprs (RRID:SCR_023557) | Rprs | software toolkit, software resource | Software R package for computing Polygenic Risk Scores from dosages. | computing Polygenic Risk Scores from Polygenic Risk Scores, Polygenic Risk Scores, Polygenic Risk Scores | Free, Available for download, Freely available | SCR_023557 | Polygenic Risk Scores | 2026-08-09 09:08:17 | 1 | |||||||||
|
JuGEx Resource Report Resource Website 1+ mentions |
JuGEx (RRID:SCR_023838) | software application, software resource | Software tool for integrating tissue transcriptome and cytoarchitectonic segregation. Combines data from Allen Human Brain Atlas and the EBRAINS Human Brain Atlas, specifically to discover how gene activities and microanatomical architectures contribute to brain function and dysfunction. Both tissue transcriptome and probabilistic brain segregation data allow for integrating genetic expression, brain structure, and function knowledge. | Allen Human Brain Atlas, EBRAINS Human Brain Atlas, tissue transcriptome, cytoarchitectonic segregation, integrating tissue transcriptome and cytoarchitectonic segregation, brain function, | is related to: Allen Institute for Brain Science | PMID:29478144 | Free, Available for download, Freely available | https://www.fz-juelich.de/de/inm/inm-1/leistungen/tools-services-und-forschungsdaten/jugex/jugex-download | SCR_023838 | 2026-08-09 09:08:48 | 1 | ||||||||
|
easyPubMed Resource Report Resource Website 1+ mentions |
easyPubMed (RRID:SCR_023570) | software toolkit, software resource | Software R package for query NCBI Entrez and retrieve PubMed records in XML or text format. Used to process PubMed records by extracting and aggregating data from selected fields. Large number of records can be downloaded via this simple-to-use interface to NCBI PubMed API. Used to search and retrieve scientific publication records from PubMed. | Search and retrieve scientific publication records, scientific publication records, PubMed | Free, Available for download, Freely available | https://www.data-pulse.com/dev_site/easypubmed/ | SCR_023570 | 2026-08-09 09:08:17 | 9 | ||||||||||
|
Preprocessing tools for oligonucleotide arrays Resource Report Resource Website 10+ mentions |
Preprocessing tools for oligonucleotide arrays (RRID:SCR_023726) | software toolkit, software resource | Software R package to analyze oligonucleotide arrays at probe level. Supports Affymetrix (CEL files) and NimbleGen arrays (XYS files). Used for annotation of Affymetrix Gene Array data. | analyze oligonucleotide arrays, Affymetrix Gene Array, NimbleGen array, Affymetrix Gene Array data annotation, | Brazilian Funding Agency CAPES ; NCRR R01 RR021967; NHGRI P41 HG004059 |
PMID:20688976 | Free, Available for download, Freely available | SCR_023726 | affycoretools | 2026-08-09 09:08:40 | 15 | ||||||||
|
AP-histology Resource Report Resource Website 10+ mentions |
AP-histology (RRID:SCR_023847) | software application, software resource | Software data pipeline which aligns histology images to the Allen CCF. | Allen Common Coordinate Framework, histology images aligning to Allen CCF, Allen CCF, aligns histology images, histology images, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023847 | 2026-08-09 09:08:20 | 13 | ||||||||||
|
ListDiff Resource Report Resource Website 1+ mentions |
ListDiff (RRID:SCR_023569) | software application, software resource | Software tool that performs SET Operations including Set Intersections, Set Unions and Set Differences over lists of words, numbers etc with formatted results . Used for comparing differences between two lists. | comparing differences, list comparison, SET Operations, Set Intersections, Set Unions, Set Differences, lists of words, numbers, formatted results, | Free, Freely available | SCR_023569 | 2026-08-09 09:08:38 | 1 | |||||||||||
|
NamSor Resource Report Resource Website 10+ mentions |
NamSor (RRID:SCR_023935) | software application, software resource | Software tool accurately classifies personal names by gender, country of origin or ethnicity. Can infer gender, translate Chinese names and Japanese names, format phone number, and split full name via user interface and API. Used as name checker for gender, origin and ethnicity determination. | name checker for gender, origin and ethnicity determination, infer gender, translate Chinese names and Japanese names, format phone number, | Free, Freely available | SCR_023935 | 2026-08-09 09:08:20 | 15 | |||||||||||
|
VarDict Resource Report Resource Website 10+ mentions |
VarDict (RRID:SCR_023658) | software application, software resource | Software tool as variant caller for both single and paired sample variant calling from BAM files. Implements amplicon bias aware variant calling from targeted sequencing experiments, rescue of long indels by realigning bwa soft clipped reads.Novel and versatile variant caller for next generation sequencing in cancer research. | variant caller, BAM files, amplicon bias aware variant calling, sequencing experiments, next generation sequencing, long indels, | is related to: vardictcpp | AstraZeneca | PMID:27060149 | Free, Available for download, Freely available | SCR_023658 | 2026-08-09 09:08:39 | 38 | ||||||||
|
Grammarly Resource Report Resource Website 50+ mentions |
Grammarly (RRID:SCR_023778) | software application, software resource | Software to correct spelling and grammar. | English, spelling, grammar, correction, | Free, Freely available | SCR_023778 | 2026-08-09 09:08:19 | 79 | |||||||||||
|
Molecular Operating Environment Resource Report Resource Website 10+ mentions |
Molecular Operating Environment (RRID:SCR_023932) | MOE | software application, software resource | Drug discovery platform to integrate visualization, modeling and simulation in single package. Integrated computer aided molecular design platform. | Chemical Computing Group ULC., drug discovery, visualization, modeling, simulation, molecular design, | Restricted | SCR_023932 | Chemical Computing Group ULC Molecular Operating Environment, Molecular Operating Environment (MOE) | 2026-08-09 09:08:50 | 27 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
