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http://scienceexchange.com/

Access service resource which connects labs needing and offering experimental services. Users can search for academic and government labs and experimental services, request and compare service quotes, and directly communicate with labs to arrange orders.

Proper citation: ScienceExchange (RRID:SCR_010620) Copy   

•   Source: SciCrunch Registry

http://www.moleculardevices.com/products/software/pclamp.html

Software suite for electrophysiology data acquisition and analysis by Molecular Devices. Used for the control and recording of voltage clamp, current clamp, and patch clamp experiments. The software suite consists of Clampex 11 Software for data acquisition, AxoScope 11 Software for background recording, Clampfit 11 Software for data analysis, and optional Clampfit Advanced Analysis Module for sophisticated and streamlined analysis.

Proper citation: pClamp (RRID:SCR_011323) Copy   

•   Source: SciCrunch Registry

https://github.com/najoshi/sabre

Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data.

Proper citation: sabre (RRID:SCR_011843) Copy   

•   Source: SciCrunch Registry

http://www.molecularevolution.org/software/genomics/velvet

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software package as de novo genomic assembler for short read sequencing technologies using de Bruijn graphs. Takes in short read sequences, removes errors, then produces high quality unique contigs, retrieves repeated areas between contigs. Can leverage very short reads in combination with read pairs to produce useful assemblies. Operating system Unix/Linux., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Velvet (RRID:SCR_010755) Copy   

•   Source: SciCrunch Registry

http://bio-bwa.sourceforge.net/

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

Proper citation: BWA (RRID:SCR_010910) Copy   

•   Source: SciCrunch Registry

http://tagcleaner.sourceforge.net/

A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets.

Proper citation: TagCleaner (RRID:SCR_011846) Copy   

•   Source: SciCrunch Registry

http://homer.ucsd.edu/

Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++.

Proper citation: HOMER (RRID:SCR_010881) Copy   

•   Source: SciCrunch Registry

https://github.com/hyattpd/Prodigal

Software tool for protein coding gene prediction for prokaryotic genomes.

Proper citation: Prodigal (RRID:SCR_011936) Copy   

•   Source: SciCrunch Registry

http://compbio.med.harvard.edu/antibodies/

The aim of this site is to collect and to share experimental results on antibodies that would otherwise remain in laboratories, thus aiding researchers in selection and validation of antibodies.

Proper citation: Antibody Validation Database (RRID:SCR_011996) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/trevigen

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 19,2024. Trevigen Cell Assays (TCA), a division of Trevigen, Inc., was established in 2008 to conduct contract research work for the pharmaceutical, biotechnology, government and academic segments of the medical research market. TCA specializes in designing and conducting assays for lead compounds and genotoxic screening based on DNA damage and repair as well as cancer cell behavior.

Proper citation: Trevigen Cell Assays (RRID:SCR_012449) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/bioseek

BioSeek is a drug discovery services company that applies human primary cell assays and predictive disease models to the discovery and development of human therapeutics and safer chemicals. BioSeek improves the success rate of drug discovery and development by integrating human biology from the earliest stages of drug discovery onward through its unique BioMAP??????? platform. Our mission is to accelerate drug compound validation and enable our clients to take safer and more effective products into the market.

Proper citation: BioSeek (RRID:SCR_012224) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/biotrend-chemikalien-gmbh-cologne

After more than a decade of experience in the sale and marketing of research products for Life Science Research, Werner Hassler, Switzerland and Gunther Jaeger, Germany founded the Cologne based BIOTREND Chemikalien GmbH in May 1988. BIOTREND was instigated in order to meet the growing demand from customers for an independent and technologically orientated distribution facility offering high quality, yet cost-effective products for biochemical, immunochemical and pharmaceutical research. Through our innovative strength we are not only providing our customers a vast product range, but also a high quality, first-class service package. At present we offer more than 90.000 products that have successfully been implemented not only in the drug discovery market, but also in cancer research as well as other scientific fields.

Proper citation: BIOTREND Chemikalien GmbH (RRID:SCR_012423) Copy   

•   Source: SciCrunch Registry

http://calpain.org/predict.rb?cls=substrate

Calpain cleavage prediction using multiple kernel learning.

Proper citation: CaMPDB (RRID:SCR_011976) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/applied-biosciences-llc

Applied Biosciences is a small miority owned LLC. We specialize in hormone assays from the very small (30 g to the 5000 kg elephant) to the very large. We have a vast experience of knowledge in the endocrine field. Our experts are board certified in animal pharmacology as well as theriogenology. Combined with our Endocrinologist, there is over 75 years of experience with animal medicine and more specficially endocrinology of many animal species.

Proper citation: Applied Biosciences (RRID:SCR_012275) Copy   

•   Source: SciCrunch Registry

http://www.med-associates.com/product/med-pc-v-software-suite/

Customizable software program for behavioral testing. Users logically order simple text commands to direct experimental work flow and data collection, providing control of chamber components, stimuli, reinforcement mechanisms, data variables, and arrays. Standard pre-written procedures and custom coding solutions are available for purchase.

Proper citation: MED PC (RRID:SCR_012156) Copy   

•   Source: SciCrunch Registry

http://stackoverflow.com/

A question and answer site for professional and enthusiast programmers.

Proper citation: Stack Overflow (RRID:SCR_011984) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/irvine-scientific

A commercial contract research organization that mentions embryo culture media for IVF procedures and cell therapy on their website.

Proper citation: Irvine Scientific (RRID:SCR_012440) Copy   

•   Source: SciCrunch Registry

http://wwwdev.ebi.ac.uk/fg/hts_mappers/

Data set providing an up-to-date compendium of HTS mappers initially provided in the article Tools for mapping high-throughput sequencing data. Please let fill out the provided form if you are a developer and your mapper is not listed or you want to update the data for your mapper.

Proper citation: HTS Mappers (RRID:SCR_011991) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/firefly-bioworks-inc

Firefly BioWorks, Inc. (Cambridge, MA) provides FirePlex????????????? miRSelect, a platform for targeted microRNA profiling of diverse biological samples. The FirePlex????????????? advantage lies in its streamlined, high-throughput protocol, affordable customization, and low capital cost. FirePlex????????????? readout is performed on standard flow cytometers, and FirePlex????????????? is offered as a service for users with limited access to flow instruments.

Proper citation: Firefly BioWorks (RRID:SCR_012320) Copy   

•   Source: SciCrunch Registry

https://www.genebygene.com/

Gene By Gene offers a full suite of genetic services, including clinical gene tests, exome sequencing, genome sequencing. In addition, the recent acquisition of bioinformatics experts, Arpeggi Inc., core also offers a full end-to-end solution for sequencing projects and bioinformatics.

Proper citation: Gene By Gene (RRID:SCR_012248) Copy   

•   Source: SciCrunch Registry