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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Progress and Health Foundation; Seville; Spain Resource Report Resource Website |
Progress and Health Foundation; Seville; Spain (RRID:SCR_000276) | FPS | training resource, group | An organization that supports the public health system in Andalusia, Spain through three main activities: research and innovation in health, technologies line information and communication, and training and evaluation of professional skills. It also provides management support to the Health Quality Agency of Andalusia, which is the driving entity of the Andalusian Quality Model. Resource is in Spanish. | public health, andalusia, spain, research, innovation, communication, training, technology, health |
is related to: PRECISESADS is parent organization of: PRECISESADS is parent organization of: Centre for Genomics and Oncological Research |
nlx_158210 | http://www.juntadeandalucia.es/fundacionprogresoysalud/english.html | SCR_000276 | Fundacion Publica Andaluza Progreso y Salud, Fundacion Progreso y Salud, Fundación Progreso y Salud, Progress and Health Foundation | 2026-08-09 09:02:56 | 0 | |||||||
|
3D ImageJ Suite Resource Report Resource Website 1+ mentions |
3D ImageJ Suite (RRID:SCR_024534) | software application, software resource | Software suite provides plugins to enhance 3D capabilities of ImageJ. | enhance 3D capabilities of ImageJ, | works with: ImageJ | Free, Freely available | SCR_024534 | 2026-08-09 09:08:57 | 1 | ||||||||||
|
Sequence Search and Alignment by Hashing Algorithm Resource Report Resource Website 1+ mentions |
Sequence Search and Alignment by Hashing Algorithm (RRID:SCR_000544) | SSAHA2 | source code, software resource | A program designed for the efficient mapping of sequence reads onto genomic references. The software is capable of reading most sequencing platforms and giving a range of outputs are supported. | sequence, genomic, analysis, search, alignment, algorithm, mapping, bio.tools |
is listed by: OMICtools is listed by: bio.tools is related to: SMALT has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11591649 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ssaha2, OMICS_00690, nlx_93831 | https://bio.tools/ssaha2 | SCR_000544 | ssaha2, ssaha, Sequence Search and Alignment by Hashing Algorithm | 2026-08-09 09:02:59 | 6 | |||||
|
BioThings API Resource Report Resource Website |
BioThings API (RRID:SCR_024539) | software application, software resource | FAIR API ecosystem for inter-connected biomedical knowledge. Provides three components in its API development ecosystem: family of high-performance APIs for accessing up-to-date annotations for genes, genetic variants, chemicals and drugs; provides BioThings API packages its API-development best practice into reusable Software Development Kit to help other bioinformaticians to build same high-quality API to distribute their own specific knowledge; BioThings API provides platform to foster findability and interoperability across community developed biomedical APIs. Provides tools for authoring API metadata following community supported OpenAPI standard and hosts standardized interactive API documentation. Defines set of OpenAPI extensions to provide biomedical specific semantic annotations. | FAIR API ecosystem, inter-connected biomedical knowledge, biomedical entity type, biological knowledge space, biomedical APIs, Software Development Kit, authoring API metadata tools, OpenAPI extensions, | Free, Freely available | SCR_024539 | 2026-08-09 09:09:04 | 0 | |||||||||||
|
rambo-k Resource Report Resource Website |
rambo-k (RRID:SCR_024198) | software application, software resource | Software tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. | removal of background sequences, Next Generation Sequencing data, | is listed by: Debian | PMID:26379285 | Free, Available for download, Freely available, | OMICS_10013 | https://sources.debian.org/src/rambo-k/ | SCR_024198 | 2026-08-09 09:08:24 | 0 | |||||||
|
sprai Resource Report Resource Website |
sprai (RRID:SCR_024353) | software application, software resource | Software tool to correct sequencing errors in single pass reads for de novo assembly. | correct sequencing errors, single pass reads, de novo assembly, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_21293 | https://sources.debian.org/src/sprai/ | SCR_024353 | single pass read accuracy improver | 2026-08-09 09:08:27 | 0 | |||||||
|
scikit-learn-intelex Resource Report Resource Website 1+ mentions |
scikit-learn-intelex (RRID:SCR_024595) | software application, software resource | Software tool as Intel(R) Extension for Scikit-learn to speed up Scikit-learn application. Used to accelerate existing scikit-learn code. Accelerates Scikit-learn applications and still have full conformance with all Scikit-Learn APIs and algorithms. Software AI accelerator brings over 10-100X acceleration across variety of applications. | Intel(R) Extension, Scikit-learn, speed up Scikit-learn application, accelerate existing scikit-learn code, | Free, Available for download, Freely available | https://github.com/intel/scikit-learn-intelex/ | SCR_024595 | 2026-08-09 09:08:30 | 1 | ||||||||||
|
streamlit Resource Report Resource Website 1+ mentions |
streamlit (RRID:SCR_024354) | software application, software resource | Software tool to turn data scripts into shareable web apps in minutes. Faster way to build and share data apps. | turn data scripts into shareable web apps, build and share data apps, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/streamlit/ | SCR_024354 | 2026-08-09 09:09:03 | 9 | |||||||||
|
sweed Resource Report Resource Website 1+ mentions |
sweed (RRID:SCR_024357) | software application, software resource | Software tool for likelihood based detection of selective sweeps in thousands of genomes. Software parallel and checkpointable tool that implements composite likelihood ratio test for detecting selective sweeps. | likelihood based detection of selective sweeps, parallel and checkpointable tool, composite likelihood ratio test, detecting selective sweeps, genomes, | is listed by: Debian | PMID:23777627 | Free, Available for download, Freely available, | OMICS_08598 | https://sources.debian.org/src/sweed/ | SCR_024357 | 2026-08-09 09:09:03 | 4 | |||||||
|
Bio-Tools-Run-Alignment-TCoffee Resource Report Resource Website |
Bio-Tools-Run-Alignment-TCoffee (RRID:SCR_024070) | software application, software resource | Software object for calculation of multiple sequence alignment from set of unaligned sequences or alignments using the TCoffee program. | calculation of multiple sequence alignment, unaligned sequences set, alignments set, TCoffee program, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libbio-tools-run-alignment-tcoffee-perl/ | SCR_024070 | libbio-tools-run-alignment-tcoffee-perl | 2026-08-09 09:08:54 | 0 | ||||||||
|
snpomatic Resource Report Resource Website |
snpomatic (RRID:SCR_024348) | software application, software resource | Short read mapping software. Read mapping tool offering variety of analytical output functions, with emphasis on genotyping, | Short read mapping, analytical output functions, genotyping, | is listed by: Debian | PMID:19574284 | Free, Available for download, Freely available, | OMICS_15114 | https://sources.debian.org/src/snpomatic/ | SCR_024348 | SNP-o-matic | 2026-08-09 09:09:03 | 0 | ||||||
|
WinNonlin Resource Report Resource Website 1000+ mentions |
WinNonlin (RRID:SCR_024504) | software application, software resource | Software to automate repetitive analysis steps and is widely considered the industry standard for NCA, TK, and PK/PD modeling. Used as non-compartmental analysis (NCA), pharmacokinetic/pharmacodynamic (PK/PD), and toxicokinetic (TK) modeling tool. | automate repetitive analysis steps, NCA, TK, PK/PD modeling, non-compartmental analysis, pharmacokinetic/pharmacodynamic, toxicokinetic, modeling tool, | is listed by: SoftCite | SCR_024504 | Phoenix WinNonlin | 2026-08-09 09:08:29 | 2013 | ||||||||||
|
NGmerge Resource Report Resource Website 10+ mentions |
NGmerge (RRID:SCR_024483) | software application, software resource | Software tool for merging paired-end reads via novel empirically derived models of sequencing errors. Used for merging paired-end reads and removing adapters. Corrects errors and ambiguous bases and assigns quality scores for merged bases that accurately reflect the error rates. | merging paired-end reads, sequencing errors, removing adapters, correct errors, correct ambiguous bases, assign quality scores for merged bases, error rates, | is listed by: SoftCite | PMID:30572828 | Free, Available for download, Freely available | SCR_024483 | 2026-08-09 09:09:04 | 32 | |||||||||
|
Workrave Resource Report Resource Website |
Workrave (RRID:SCR_024364) | software application, software resource | Software tool to assist in recovery and prevention of Repetitive Strain Injury. Monitors keyboard and mouse usage and using this information, it frequently alerts you to take microbreaks, rest breaks and restricts you to your daily computer usage. | recovery and prevention of Repetitive Strain Injury, monitor keyboard and mouse usage, microbreaks, rest breaks, daily computer usage restriction, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/workrave/ | SCR_024364 | workrave | 2026-08-09 09:09:03 | 0 | ||||||||
|
XMedCon Resource Report Resource Website 1+ mentions |
XMedCon (RRID:SCR_024366) | software application, software resource | Open source software toolkit for medical image conversion. | medical image conversion, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/xmedcon/ | SCR_024366 | xmedcon | 2026-08-09 09:08:53 | 1 | ||||||||
|
VMD Resource Report Resource Website 50+ mentions |
VMD (RRID:SCR_024368) | software application, software resource | Software tool as molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code. | molecular visualization, displaying, animating, analyzing, large biomolecular systems, . | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/vmd/ | SCR_024368 | vmd | 2026-08-09 09:09:03 | 68 | ||||||||
|
DNA Amplicon Resource Report Resource Website 1+ mentions |
DNA Amplicon (RRID:SCR_024481) | software application, software resource | Local Run Manager DNA Amplicon analysis module aligns amplicon reads against reference specified in the manifest file. Variants are called for the targeted regions. | Local Run Manager DNA Amplicon analysis module, align amplicon reads, | Restricted | SCR_024481 | Illumina DNA Amplicon | 2026-08-09 09:08:55 | 1 | ||||||||||
|
mirtop Resource Report Resource Website 1+ mentions |
mirtop (RRID:SCR_024116) | software application, software resource | Command lines tool to annotate miRNAs with standard mirna/isomir naming. | annotate miRNAs, standard mirna/isomir naming, | is listed by: Debian | DOI:10.7490/f1000research.1115724.1 | Free, Available for download, Freely available, | OMICS_31718 | https://sources.debian.org/src/mirtop/, https://mirtop.readthedocs.io/en/latest/ | SCR_024116 | 2026-08-09 09:08:46 | 1 | |||||||
|
mPSQed Resource Report Resource Website |
mPSQed (RRID:SCR_024118) | software application, software resource | Software tool for the design of multiplex pyrosequencing assays. | design of multiplex pyrosequencing assays, | is listed by: Debian | PMID:22675516 | Free, Available for download, Freely available, | OMICS_33146 | https://sources.debian.org/src/mpsqed/ | SCR_024118 | mpsqed | 2026-08-09 09:08:56 | 0 | ||||||
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SMILE Resource Report Resource Website 1+ mentions |
SMILE (RRID:SCR_024119) | software application, software resource | Software tool that infers motifs in set of sequences to infer exceptionnal sites as binding sites in DNA sequences. 1.4 version allows to infer motifs written on any alphabet in any kind of sequences. Allows to deal with motifs associated by some distance constraints. Used to group under unique model different occurrences composed of several boxes separated by spacers of different lengths. | infers motifs in set of sequences, binding sites in DNA sequences, distance constraints, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_20188 | https://sources.debian.org/src/mlv-smile/ | SCR_024119 | mlv-smile | 2026-08-09 09:08:46 | 1 |
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