Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
WHONET Resource Report Resource Website 10+ mentions |
WHONET (RRID:SCR_024495) | software application, software resource | Software free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts. WHONET, available in 44 languages, supports local, national, regional, and global surveillance efforts in over 2,300 hospital, public health, animal health, and food laboratories in over 130 countries worldwide. | management and analysis of microbiology laboratory data | is listed by: SoftCite | Free, Available for download, Freely available | SCR_024495 | 2026-08-09 09:09:04 | 30 | ||||||||||
|
VelvetOptimiser Resource Report Resource Website 50+ mentions |
VelvetOptimiser (RRID:SCR_024376) | software application, software resource | Software tool to run as wrapper script for Velvet assembler and to assist with optimising the assembly.Used to search supplied hash value range for optimum, estimates expected coverage and then searches for optimum coverage cutoff. Estimates insert lengths for paired end libraries. Can optimise assemblies by default optimisation condition or by user supplied one. It outputs the results to subdirectory and records all its operations in logfile. | wrapper script, Velvet assembler, optimising assembly, optimum search, search supplied hash value range, optimum coverage cutoff, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_14601 | https://sources.debian.org/src/velvetoptimiser/ https://sources.debian.org/src/vsearch/ | SCR_024376 | velvetoptimiser, perl-velvetoptimiser | 2026-08-09 09:08:27 | 60 | |||||||
|
PyEGA Resource Report Resource Website 1+ mentions |
PyEGA (RRID:SCR_024654) | software application, software resource | Software Python tool for viewing and downloading files from authorized European Genome-phenome Archive datasets. Python based EGA download client. | EGA download client, viewing and downloading files, European Genome-phenome Archive datasets, | Free, Available for download, Freely available | https://github.com/blachlylab/pyega | SCR_024654 | Python European Genome-phenome Archive | 2026-08-09 09:08:58 | 4 | |||||||||
|
VisIt Resource Report Resource Website |
VisIt (RRID:SCR_024370) | software application, software resource | Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations. | generate visualizations, animation, analysis, save resulting images and animations for presentations, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/visit/ | SCR_024370 | visit | 2026-08-09 09:08:27 | 0 | ||||||||
|
MView Resource Report Resource Website 1+ mentions |
MView (RRID:SCR_024129) | software application, software resource | Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. | database search, multiple alignment viewer, | is listed by: Debian | PMID:9632837 | Free, Available for download, Freely available, | OMICS_15907 | https://sources.debian.org/src/mview/ | SCR_024129 | mview | 2026-08-09 09:08:47 | 5 | ||||||
|
ImageTwin Resource Report Resource Website 1+ mentions |
ImageTwin (RRID:SCR_024543) | software application, software resource | AI based software for detecting integrity issues in figures of scientific articles. Used for detecting integrity issues in life science articles. Detects inappropriate manipulation and duplication in many figure types, including blots, microscopy images, and light photography. | scientific literature manipulated images check, detect inappropriate manipulation and duplication, blots check, microscopy images check, light photography check, manipulated images, | Restricted | SCR_024543 | 2026-08-09 09:08:30 | 3 | |||||||||||
|
Progress and Health Foundation; Seville; Spain Resource Report Resource Website |
Progress and Health Foundation; Seville; Spain (RRID:SCR_000276) | FPS | training resource, group | An organization that supports the public health system in Andalusia, Spain through three main activities: research and innovation in health, technologies line information and communication, and training and evaluation of professional skills. It also provides management support to the Health Quality Agency of Andalusia, which is the driving entity of the Andalusian Quality Model. Resource is in Spanish. | public health, andalusia, spain, research, innovation, communication, training, technology, health |
is related to: PRECISESADS is parent organization of: PRECISESADS is parent organization of: Centre for Genomics and Oncological Research |
nlx_158210 | http://www.juntadeandalucia.es/fundacionprogresoysalud/english.html | SCR_000276 | Fundacion Publica Andaluza Progreso y Salud, Fundacion Progreso y Salud, Fundación Progreso y Salud, Progress and Health Foundation | 2026-08-09 09:02:56 | 0 | |||||||
|
3D ImageJ Suite Resource Report Resource Website 1+ mentions |
3D ImageJ Suite (RRID:SCR_024534) | software application, software resource | Software suite provides plugins to enhance 3D capabilities of ImageJ. | enhance 3D capabilities of ImageJ, | works with: ImageJ | Free, Freely available | SCR_024534 | 2026-08-09 09:08:57 | 1 | ||||||||||
|
Sequence Search and Alignment by Hashing Algorithm Resource Report Resource Website 1+ mentions |
Sequence Search and Alignment by Hashing Algorithm (RRID:SCR_000544) | SSAHA2 | source code, software resource | A program designed for the efficient mapping of sequence reads onto genomic references. The software is capable of reading most sequencing platforms and giving a range of outputs are supported. | sequence, genomic, analysis, search, alignment, algorithm, mapping, bio.tools |
is listed by: OMICtools is listed by: bio.tools is related to: SMALT has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11591649 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ssaha2, OMICS_00690, nlx_93831 | https://bio.tools/ssaha2 | SCR_000544 | ssaha2, ssaha, Sequence Search and Alignment by Hashing Algorithm | 2026-08-09 09:02:59 | 6 | |||||
|
BioThings API Resource Report Resource Website |
BioThings API (RRID:SCR_024539) | software application, software resource | FAIR API ecosystem for inter-connected biomedical knowledge. Provides three components in its API development ecosystem: family of high-performance APIs for accessing up-to-date annotations for genes, genetic variants, chemicals and drugs; provides BioThings API packages its API-development best practice into reusable Software Development Kit to help other bioinformaticians to build same high-quality API to distribute their own specific knowledge; BioThings API provides platform to foster findability and interoperability across community developed biomedical APIs. Provides tools for authoring API metadata following community supported OpenAPI standard and hosts standardized interactive API documentation. Defines set of OpenAPI extensions to provide biomedical specific semantic annotations. | FAIR API ecosystem, inter-connected biomedical knowledge, biomedical entity type, biological knowledge space, biomedical APIs, Software Development Kit, authoring API metadata tools, OpenAPI extensions, | Free, Freely available | SCR_024539 | 2026-08-09 09:09:04 | 0 | |||||||||||
|
rambo-k Resource Report Resource Website |
rambo-k (RRID:SCR_024198) | software application, software resource | Software tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. | removal of background sequences, Next Generation Sequencing data, | is listed by: Debian | PMID:26379285 | Free, Available for download, Freely available, | OMICS_10013 | https://sources.debian.org/src/rambo-k/ | SCR_024198 | 2026-08-09 09:08:24 | 0 | |||||||
|
sprai Resource Report Resource Website |
sprai (RRID:SCR_024353) | software application, software resource | Software tool to correct sequencing errors in single pass reads for de novo assembly. | correct sequencing errors, single pass reads, de novo assembly, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_21293 | https://sources.debian.org/src/sprai/ | SCR_024353 | single pass read accuracy improver | 2026-08-09 09:08:27 | 0 | |||||||
|
scikit-learn-intelex Resource Report Resource Website 1+ mentions |
scikit-learn-intelex (RRID:SCR_024595) | software application, software resource | Software tool as Intel(R) Extension for Scikit-learn to speed up Scikit-learn application. Used to accelerate existing scikit-learn code. Accelerates Scikit-learn applications and still have full conformance with all Scikit-Learn APIs and algorithms. Software AI accelerator brings over 10-100X acceleration across variety of applications. | Intel(R) Extension, Scikit-learn, speed up Scikit-learn application, accelerate existing scikit-learn code, | Free, Available for download, Freely available | https://github.com/intel/scikit-learn-intelex/ | SCR_024595 | 2026-08-09 09:08:30 | 1 | ||||||||||
|
streamlit Resource Report Resource Website 1+ mentions |
streamlit (RRID:SCR_024354) | software application, software resource | Software tool to turn data scripts into shareable web apps in minutes. Faster way to build and share data apps. | turn data scripts into shareable web apps, build and share data apps, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/streamlit/ | SCR_024354 | 2026-08-09 09:09:03 | 9 | |||||||||
|
sweed Resource Report Resource Website 1+ mentions |
sweed (RRID:SCR_024357) | software application, software resource | Software tool for likelihood based detection of selective sweeps in thousands of genomes. Software parallel and checkpointable tool that implements composite likelihood ratio test for detecting selective sweeps. | likelihood based detection of selective sweeps, parallel and checkpointable tool, composite likelihood ratio test, detecting selective sweeps, genomes, | is listed by: Debian | PMID:23777627 | Free, Available for download, Freely available, | OMICS_08598 | https://sources.debian.org/src/sweed/ | SCR_024357 | 2026-08-09 09:09:03 | 4 | |||||||
|
Bio-Tools-Run-Alignment-TCoffee Resource Report Resource Website |
Bio-Tools-Run-Alignment-TCoffee (RRID:SCR_024070) | software application, software resource | Software object for calculation of multiple sequence alignment from set of unaligned sequences or alignments using the TCoffee program. | calculation of multiple sequence alignment, unaligned sequences set, alignments set, TCoffee program, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libbio-tools-run-alignment-tcoffee-perl/ | SCR_024070 | libbio-tools-run-alignment-tcoffee-perl | 2026-08-09 09:08:54 | 0 | ||||||||
|
snpomatic Resource Report Resource Website |
snpomatic (RRID:SCR_024348) | software application, software resource | Short read mapping software. Read mapping tool offering variety of analytical output functions, with emphasis on genotyping, | Short read mapping, analytical output functions, genotyping, | is listed by: Debian | PMID:19574284 | Free, Available for download, Freely available, | OMICS_15114 | https://sources.debian.org/src/snpomatic/ | SCR_024348 | SNP-o-matic | 2026-08-09 09:09:03 | 0 | ||||||
|
WinNonlin Resource Report Resource Website 1000+ mentions |
WinNonlin (RRID:SCR_024504) | software application, software resource | Software to automate repetitive analysis steps and is widely considered the industry standard for NCA, TK, and PK/PD modeling. Used as non-compartmental analysis (NCA), pharmacokinetic/pharmacodynamic (PK/PD), and toxicokinetic (TK) modeling tool. | automate repetitive analysis steps, NCA, TK, PK/PD modeling, non-compartmental analysis, pharmacokinetic/pharmacodynamic, toxicokinetic, modeling tool, | is listed by: SoftCite | SCR_024504 | Phoenix WinNonlin | 2026-08-09 09:08:29 | 2013 | ||||||||||
|
NGmerge Resource Report Resource Website 10+ mentions |
NGmerge (RRID:SCR_024483) | software application, software resource | Software tool for merging paired-end reads via novel empirically derived models of sequencing errors. Used for merging paired-end reads and removing adapters. Corrects errors and ambiguous bases and assigns quality scores for merged bases that accurately reflect the error rates. | merging paired-end reads, sequencing errors, removing adapters, correct errors, correct ambiguous bases, assign quality scores for merged bases, error rates, | is listed by: SoftCite | PMID:30572828 | Free, Available for download, Freely available | SCR_024483 | 2026-08-09 09:09:04 | 32 | |||||||||
|
Workrave Resource Report Resource Website |
Workrave (RRID:SCR_024364) | software application, software resource | Software tool to assist in recovery and prevention of Repetitive Strain Injury. Monitors keyboard and mouse usage and using this information, it frequently alerts you to take microbreaks, rest breaks and restricts you to your daily computer usage. | recovery and prevention of Repetitive Strain Injury, monitor keyboard and mouse usage, microbreaks, rest breaks, daily computer usage restriction, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/workrave/ | SCR_024364 | workrave | 2026-08-09 09:09:03 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
