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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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3D Facial Norms Database Resource Report Resource Website 1+ mentions |
3D Facial Norms Database (RRID:SCR_005991) | 3D Facial Norms Database | data or information resource, database | Database of high-quality craniofacial anthropometric normative data for the research and clinical community based on digital stereophotogrammetry. Unlike traditional craniofacial normative datasets that are limited to measures obtained with handheld calipers and tape measurers, the anthropometric data provided here are based on digital stereophotogrammetry, a method of 3D surface imaging ideally suited for capturing human facial surface morphology. Also unlike more traditional normative craniofacial resources, the 3D Facial Norms Database allows users to interact with data via an intuitive graphical interface and - given proper credentials - gain access to individual-level data, allowing users to perform their own analyses. | face, phenotype, genotype, facial landmark, coordinate, anthropometric, facial measurement | has parent organization: FaceBase | NIDCR U01DE020078 | nlx_151373 | SCR_005991 | 2026-09-12 01:01:40 | 2 | ||||||||
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IGDB.NSCLC Resource Report Resource Website 1+ mentions |
IGDB.NSCLC (RRID:SCR_006048) | IGDB.NSCLC | data or information resource, database | IGDB.NSCLC database is aiming to facilitate and prioritize identified lung cancer genes and microRNAs for pathological and mechanistic studies of lung tumorigenesis and for developing new strategies for clinical interventions. We integrated and curated various lung cancer genomic datasets to present # lung cancer genes with somatic mutations, experimental supports and statistic significance in association with clinicopathological features; # genomic alterations with copy number alterations (CNA) detected by high density SNP arrays, gain or loss regions detected by arrayed comparative genome hybridization (aCGH), and loss of heterozygosity (LOH) detected by microsatellite markers; # aberrant expression of genes and microRNAs detected by various microarrays. IGDB.NSCLC database provides user friendly interfaces and searching functions to display multiple layers of evidence for detecting lung cancer target genes and microRNAs, especially emphasizing on concordant alterations: # genes with altered expression located in the CNA regions; # microRNAs with altered expression located in the CNA regions; # somatic mutation genes located in the CNA regions; and # genes associated with clinicopathological features located in the CNA regions. These concordant altered genes and miRNAs should be prioritized for further basic and clinical studies. | genomic database, non-small cell lung cancer, lung, pulmonary, cancer, genome, lung adenocarcinoma, squamous cell carcinoma, genomic alteration, lung tumorigenesis, copy number alteration, heterozygosity, gene, microrna, somatic mutation, clinical information, alteration, gene expression, microrna expression, somatic mutation, chromosome, lung cancer gene, aberrant expression, microarray, clinicopathology | has parent organization: Academia Sinica; Taipei; Taiwan | Non-small cell lung cancer, Lung cancer, Adenocarcinoma, Squamous Cell Carcinoma | National Research Program for Genomic Medicine NSC98-3112-B-001-004; National Research Program for Genomic Medicine NSC98-3112-B-001-031; National Science Council Taiwan NSC100-2325-B-001-012 |
PMID:22139933 | nlx_151446 | SCR_006048 | Integrated Genomic Database of Non-Small Cell Lung Cancer | 2026-09-12 01:01:40 | 5 | |||||
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KI Biobank - Tissue Biobank Resource Report Resource Website 1+ mentions |
KI Biobank - Tissue Biobank (RRID:SCR_006043) | KI Biobank - Tissue Biobank | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 4, 2014. Tissue Biobank collects samples from different types of cancers patients prospectively. Blood samples are being sent to KI Biobank for DNA extraction and storage. Number of sample donors: 611 (June 2010) | blood, dna |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151440 | SCR_006043 | 2026-09-12 01:01:40 | 1 | |||||||
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VirusMINT Resource Report Resource Website 10+ mentions |
VirusMINT (RRID:SCR_005987) | VirusMINT | data or information resource, database | A virus protein interactions database that collects and annotates all the interactions between human and viral proteins and integrates this information in the human protein interaction network. It uses the PSI-MI standard and is fully integrated with the MINT database. You can search for any viral or human protein by entering either common names or database identifiers or display a complete viral interactome. | protein interaction, virus, protein, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: PSI-MI is related to: VirHostNet: Virus-Host Network is related to: MINT has parent organization: University of Rome Tor Vergata; Rome; Italy |
Papilloma virus, Human immunodeficiency virus, Epstein-Barr virus, Hepatitis B virus, Hepatitis C virus, Herpes virus, Simian virus 40 | PMID:18974184 | nif-0000-03636, OMICS_01909, biotools:virusmint, r3d100010685 | https://bio.tools/virusmint, https://doi.org/10.17616/R3F890 | SCR_005987 | 2026-09-12 01:01:40 | 18 | ||||||
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Recon x Resource Report Resource Website 10+ mentions |
Recon x (RRID:SCR_006345) | Recon x | data or information resource, database | A comprehensive biochemical knowledge-base on human metabolism, this community-driven, consensus metabolic reconstruction integrates metabolic information from five different resources: * Recon 1, a global human metabolic reconstruction (Duarte et al, PNAS, 104(6), 1777-1782, 2007) * EHMN, Edinburgh Human Metabolic Network (Hao et al., BMC Bioinformatics 11, 393, 2010) * HepatoNet1, a liver metabolic reconstruction (Gille et al., Molecular Systems Biology 6, 411, 2010), * Ac/FAO module, an acylcarnitine/fatty acid oxidation module (Sahoo et al., Molecular bioSystems 8, 2545-2558, 2012), * a human small intestinal enterocytes reconstruction (Sahoo and Thiele, submitted). Additionally, more than 370 transport and exchange reactions were added, based on a literature review. Recon 2 is fully semantically annotated (Le Nov��re, N. et al. Nat Biotechnol 23, 1509-1515, 2005) with references to persistent and publicly available chemical and gene databases, unambiguously identifying its components and increasing its applicability for third-party users. Here you can explore the content of the reconstruction by searching/browsing metabolites and reactions. Recon 2 predictive model is available in the Systems Biology Markup Language format. | metabolism, annotation, metabolite, reaction, genome, reconstruction | has parent organization: University of Iceland; Reykjavik; Iceland | Knut and Alice Wallenberg Foundation ; Marie Curie International Reintegration Grant 249261; European Research Council 232816; Rannis research 100406022; Manchester Centre for Integrative Systems Biology BB/C008219/1; Bioprocessing Research Industry Club ; European Union FP7 201142; BBSRC BB/F005938; BBSRC BB/F00561X; DFG 0315756; DFG 0315741; NIGMS GM088244; NSF 0643548; Cystic Fibrosis Research Foundation 1060 |
PMID:23455439 | Free, Acknowledgement requested | nlx_152079 | SCR_006345 | Recon x Reconstruction of The Human Genome, Recon x - Reconstruction of The Human Genome, Recon x: Reconstruction of The Human Genome, Recon 2 | 2026-09-12 01:01:42 | 12 | |||||
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University of Florida DNA and Tissue Bank Resource Report Resource Website |
University of Florida DNA and Tissue Bank (RRID:SCR_006581) | Alpha-1 DNA and Tissue Bank | biomaterial supply resource, material resource, tissue bank | The Alpha-1 Foundation DNA and Tissue Bank, established in 2000 by the Alpha-1 Foundation, is a repository specifically for medical information (hyperlink to data points) and tissue samples (DNA, plasma, lung/liver) for alpha-1-antitrypsin deficient individuals, their family and friends. The Bank serves the international scientific community. Currently the Bank has the largest collection of DNA in the world for Alpha-1-antitrypsin research studies. The Alpha-1 Foundation has established a Tissue Bank Advisory Committee which includes a wide representation of physicians, ethicists, attorneys, consumers as well as international experts in tissue banking. Collectively this Advisory Committee reviews requests for research. At this time the Bank has over 2400 members who have provided valuable medical and/or tissue samples. For investigators interested in obtaining tissue samples with phenotypes from the Bank, please contact the Alpha-1 Foundation or our research staff at the University of Florida. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Florida College of Medicine; Florida; USA |
nlx_86173 | http://www.alphaone.ufl.edu/dna_tissue_bank.php | SCR_006581 | Alpha-1 Foundation DNA Tissue Bank, UF DNA Tissue Bank, Alpha-1 DNA Tissue Bank, UF DNA and Tissue Bank, Alpha-1 Foundation DNA and Tissue Bank, UF Alpha-1 Foundation DNA and Tissue Bank, UF Alpha-1 Foundation DNA Tissue Bank, University of Florida DNA Tissue Bank | 2026-09-12 01:01:43 | 0 | ||||||||
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DisGeNET Resource Report Resource Website 1000+ mentions |
DisGeNET (RRID:SCR_006178) | DisGeNET | data or information resource, database | Database and discovery platform containing publicly available collections of genes and variants associated to human diseases. Integrates data from curated repositories, GWAS catalogues, animal models and scientific literature. | gene, disease, gene-disease association, gene-disease ontology, gene-disease text mining, text mining, genotype-phenotype, rdf, genotype, phenotype, gene-disease, variant-disease, FASEB list |
uses: Comparative Toxicogenomics Database (CTD) uses: Genetic Association Database uses: UniProt uses: Mouse Genome Database uses: Reactome uses: Unified Medical Language System uses: Entrez Gene uses: MEDLINE uses: National Center for Biomedical Ontology uses: National Cancer Institute Thesaurus uses: Human Phenotype Ontology uses: Semanticscience Integrated Ontology uses: Cytoscape uses: Literature-derived human gene-disease network uses: Rat Genome Database (RGD) uses: National Library of Medicine uses: PsyGeNET is used by: HmtPhenome is listed by: 3DVC is affiliated with: Gene-Disease Association Type Ontology has parent organization: Pompeu Fabra University; Barcelona; Spain |
EFPIA ; Elixir-Excelerate ; European Union Horizon 2020 ; European Union Seventh Framework Programme ; Innovative Medicines Initiative Joint Undertaking ; Instituto de Salud Carlos III-Fondo Europeo de Desarrollo Regional |
PMID:27924018 PMID:25877637 PMID:21695124 PMID:20861032 |
Restricted | nlx_151710, r3d100013301 | https://doi.org/10.17616/R31NJMR9 | SCR_006178 | database of gene disease associations | 2026-09-12 01:01:41 | 3128 | ||||
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StemCellDB Resource Report Resource Website 1+ mentions |
StemCellDB (RRID:SCR_006305) | hES Cell Database | data or information resource, database | Database characterizing and comparing pluripotent human stem cells. The growth and culture conditions of all 21 human embryonic stem cell lines approved under the August 2001 Presidential Executive Order have been analyzed. Available to the scientific community are the results of our rigorous characterization of these cell lines at a more advanced level. | human pluripotent stem cell, human embryonic stem cell line, gene expression, pluripotent, adult, affymetrix microarray platform, agilent microarray platform, gene, stem cell, affymetrix, agilent, microarray, snp, array cgh, methylation, mirna array | has parent organization: National Institutes of Health | NINDS | PMID:23117585 | Public | nlx_151996 | SCR_006305 | NIH Stem Cell Database | 2026-09-12 01:01:42 | 1 | |||||
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Clinical Genomic Database Resource Report Resource Website 10+ mentions |
Clinical Genomic Database (RRID:SCR_006427) | CGD | data or information resource, database | Manually curated database of all conditions with known genetic causes, focusing on medically significant genetic data with available interventions. Includes gene symbol, conditions, allelic conditions, inheritance, age in which interventions are indicated, clinical categorization, and general description of interventions/rationale. Contents are intended to describe types of interventions that might be considered. Includes only single gene alterations and does not include genetic associations or susceptibility factors related to more complex diseases. | genomic sequencing, genome, clinical, pediatric, adult human, young human, genomic medicine, whole-genome sequencing, gene, organ system, intervention, gene symbol, condition, allelic condition, clinical categorization, manifestation, inheritance, age group, genetic variant, pathogenic mutation |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NHGRI | PMID:23696674 | Free, Freely available | nlx_152872, r3d100012332 | https://doi.org/10.17616/R31D3C | SCR_006427 | Clinical Genomics Database | 2026-09-12 01:01:42 | 10 | ||||
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GeneTerm Linker Resource Report Resource Website 1+ mentions |
GeneTerm Linker (RRID:SCR_006385) | GTLinker | analysis service resource, data analysis service, production service resource, service resource | Web application that filters and links enriched output data identifying sets of associated genes and terms, producing metagroups of coherent biological significance. The method uses fuzzy reciprocal linkage between genes and terms to unravel their functional convergence and associations. It can also be accessed through its web service. | gene, functional annotation, function, functional metagroup, p-value, annotation, web service |
is listed by: OMICtools is related to: Gene Ontology is related to: KEGG is related to: InterPro has parent organization: Spanish National Research Council; Madrid; Spain |
PMID:21949701 | Acknowledgement requested | OMICS_02227 | SCR_006385 | GeneTerm Linker - post enrichment functional association by non-redundant reciprocal linkage | 2026-09-12 01:01:42 | 2 | ||||||
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Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center Resource Report Resource Website |
Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center (RRID:SCR_006661) | CHTN Western Division | biomaterial supply resource, material resource, tissue bank | The Cooperative Human Tissue Network- Western Division at Vanderbilt University Medical Center is one of six institutions throughout the country funded by the National Cancer Institutes to procure and distribute remnant human tissues to biomedical researchers throughout the United States and Canada. CHTN operates through a shared networking system which allows investigators greater access to available research specimens. CHTN offers a variety of preparation and preservation techniques to ensure investigators are receiving the quality specimens needed for research. Remnant tissues are obtained from surgical resections and autopsies and are procured to the specifications of the investigator. | tissue |
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is listed by: One Mind Biospecimen Bank Listing is related to: Vanderbilt University Medical Center; Tennessee; USA has parent organization: Vanderbilt University; Tennessee; USA |
All | NCI | Public | nlx_143710 | SCR_006661 | CHTN Western Division at VUMC, Cooperative Human Tissue Network - Western Division, VUMC Tissue Repository | 2026-09-12 01:01:43 | 0 | |||||
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GeneTrail Resource Report Resource Website 100+ mentions |
GeneTrail (RRID:SCR_006250) | GeneTrail | analysis service resource, data analysis service, production service resource, service resource | A web-based application that analyzes gene sets for statistically significant accumulations of genes that belong to some functional category. Considered category types are: KEGG Pathways, TRANSPATH Pathways, TRANSFAC Transcription Factor, GeneOntology Categories, Genomic Localization, Protein-Protein Interactions, Coiled-coil domains, Granzyme-B clevage sites, and ELR/RGD motifs. The web server provides two statistical approaches, "Over-Representation Analysis" (ORA) comparing a reference set of genes to a test set, and "Gene Set Enrichment Analysis" (GSEA) scoring sorted lists of genes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | pathway, microarray, enrichment, genomic, proteomic, function, transcription factor, genomic localization, protein-protein interaction, coiled-coil domain, granzyme-b clevage site, motif, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: KEGG is related to: TRANSPATH is related to: TRANSFAC is related to: Gene Ontology has parent organization: Saarland University; Saarbrucken; Germany |
PMID:17526521 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:genetrail, OMICS_02236 | https://bio.tools/genetrail | SCR_006250 | 2026-09-12 01:01:42 | 114 | ||||||
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Phenomizer Resource Report Resource Website 10+ mentions |
Phenomizer (RRID:SCR_006157) | analysis service resource, data analysis service, production service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 31,2026. Phenomizer offers three different approaches to find the appropriate term for a phenotypic abnormality, indicated by the three tabs on the left hand side: Feature, Disease and Ontology. The Phenomizer is intended to be used by qualified and licensed physicians in order to provide assistance in reaching the correct diagnosis in patients with hereditary diseases and for use as a teaching aid. The Phenomizer does not make diagnoses. Rather, it produces a ranked list of possibilities that can be used by physicians as a part of the diagnostic workup. The Phenomizer does not contain information about all possible diagnoses or even all possible hereditary diseases. The Phenomizer should not be used to make medical decisions without the advice of a physician. | feature, disease, ontology, clinical, differential diagnoses |
is related to: Human Phenotype Ontology is related to: Human Phenotype Ontology has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
PMID:19800049 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151657 | SCR_006157 | Phenomizer - Clinical Diagnostics with Similarity Searches in Ontologies | 2026-09-12 01:01:41 | 32 | |||||||
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Biobank Ireland Trust Resource Report Resource Website |
Biobank Ireland Trust (RRID:SCR_006430) | Biobank Ireland | biomaterial supply resource, material resource, tissue bank | Biobank Ireland Trust promotes the development of an Irish Hospital Biobank Network to coordinate collection of small samples of cancer and normal tissue and coded patient data from those having a cancer operation. This will facilitate international molecular research collaborations, which may help identify the best treatment for each individual patient - personalized medicine. Biobank Ireland is promoting the development of a Hospital Biobank Network throughout the island of Ireland as a bridge between cancer research and care. This new infrastructure will facilitate large national and international translational research collaborations that will raise Ireland''s research profile and benefit those with cancer. Researchers will have online access to samples and to restricted patient data from participating hospitals and an equitable withdrawal process for scientifically and ethically approved projects. Important research results will be explained to the public. Other Objectives: * To facilitate (inter)national translational research collaborations that may lead to new tests and better, less toxic treatments for those with cancer * To enable molecular research on cancer tissue from clinical trials patients identify the best treatment for each individual patient ������??personalized medicine������?? * Researchers will have online access to samples and restricted patient data from participating hospitals, and a fair release process for scientifically and ethically approved projects * Biobank Ireland recognizes the need to have harmonization in biobanking around the world * Important research results will be explained to the public * Biobank Ireland will seek to have the hospital-based Biobank Network funded by government as standard of care | tissue, cancer tissue, normal tissue, blood, clinical data, tumor, frozen, cancer, normal | is listed by: One Mind Biospecimen Bank Listing | Cancer, Normal | industry ; business ; philanthropists ; fundraising events |
Collaborators: This new infrastructure will facilitate large national and international translational research collaborations that will raise Ireland''s research profile and benefit those with cancer. Researchers will have online access to samples and to restricted patient data from participating hospitals and an equitable withdrawal process for scientifically and ethically approved projects. | nlx_69463 | http://www.biobankireland.com/index.html | SCR_006430 | 2026-09-12 01:01:42 | 0 | |||||
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Gait Dynamics in Neuro-Degenerative Disease Data Base Resource Report Resource Website 1+ mentions |
Gait Dynamics in Neuro-Degenerative Disease Data Base (RRID:SCR_006979) | data or information resource, database | Database of records from patients with Parkinson's disease (n = 15), Huntington's disease (n = 20), or amyotrophic lateral sclerosis (n = 13). Records from 16 healthy control subjects are also included here. The raw data were obtained using force-sensitive resistors, with the output roughly proportional to the force under the foot. Stride-to-stride measures of footfall contact times were derived from these signals. | gait, neurodegenerative disease, database, parkinson, huntington, als |
is used by: NIF Data Federation has parent organization: Physiobank |
Parkinson's disease, Huntington's disease, Amyotrophic Lateral Sclerosis | Acknowledgement requested | nlx_64373 | SCR_006979 | Gait Dynamics in Neurodegenerative Disease, Gait Dynamics in Neuro-Degenerative Disease DataBase, Gait Dynamics in Neuro-Degenerative Disease Data Base | 2026-09-12 01:01:45 | 3 | |||||||
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Bipolar Disorder Neuroimaging Database Resource Report Resource Website 1+ mentions |
Bipolar Disorder Neuroimaging Database (RRID:SCR_007025) | BiND | data or information resource, database | Database of 141 studies which have investigated brain structure (using MRI and CT scans) in patients with bipolar disorder compared to a control group. Ninety-eight studies and 47 brain structures are included in the meta-analysis. The database and meta-analysis are contained in an Excel spreadsheet file which may be freely downloaded from this website. | magnetic resonance imaging assay, cat imaging assay, mri, brain, neuroimaging, normal control, image | has parent organization: King's College London; London; United Kingdom | Bipolar Disorder | King's College London; England; United Kingdom ; National Institute for Health Research NIHR Biomedical Research Centre for Mental Health ; South London and Maudsley NHS Foundation ; MRC |
PMID:18762588 | nlx_149352 | SCR_007025 | Bipolar Disorder Neuroimaging Database (BiND) | 2026-09-12 01:01:45 | 3 | |||||
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Consensus CDS Resource Report Resource Website 100+ mentions |
Consensus CDS (RRID:SCR_006729) | CCDS | data or information resource, database | Database (anonymous FTP) resulting from a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations. Collaborators are EBI, NCBI, UCSC, WTSI and the initial results are also available from the participants'''' genome browser Web sites. In addition, CCDS identifiers are indicated on the relevant NCBI RefSeq and Entrez Gene records and in Map Viewer displays of RNA (RefSeq) and Gene annotations on the reference assembly. | human genome sequence, human protein, mouse genome sequence, mouse protein, protein coding region, gene, genome sequence, genome, sequence, gene annotation, protein, gold standard |
is listed by: OMICtools is related to: Entrez Gene is related to: HomoloGene is related to: MapViewer is related to: VEGA has parent organization: NCBI has parent organization: European Bioinformatics Institute has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom has parent organization: University of California at Santa Cruz; California; USA |
PMID:24217909 PMID:22434842 PMID:19498102 |
The community can contribute to this resource, Acknowledgement requested | nif-0000-02645, OMICS_01535 | http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi | SCR_006729 | CCDS Database, NCBI Consensus CDS protein set, NCBI CCDS Database | 2026-09-12 01:01:44 | 242 | |||||
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GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool Resource Report Resource Website 500+ mentions |
GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool (RRID:SCR_006848) | GOrilla | analysis service resource, data analysis service, production service resource, service resource | A tool for identifying and visualizing enriched GO terms in ranked lists of genes. It can be run in one of two modes: * Searching for enriched GO terms that appear densely at the top of a ranked list of genes or * Searching for enriched GO terms in a target list of genes compared to a background list of genes. | gene, genetic, ontology, ontology or annotation visualization, statistical analysis, term enrichment, visualization, analysis, protein |
is listed by: Gene Ontology Tools is listed by: OMICtools is related to: Gene Ontology |
European Union FP6 ; Yeshaya Horowitz Association |
PMID:19192299 | Acknowledgement requested, Free, Public | nlx_80425, OMICS_02282 | SCR_006848 | Gene Ontology enRIchment anaLysis and visuaLizAtion tool, GOrilla: Gene Ontology Enrichment Analysis Visualization Tool | 2026-09-12 01:01:44 | 524 | |||||
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SysZNF - C2H2 Zinc Finger genes Resource Report Resource Website |
SysZNF - C2H2 Zinc Finger genes (RRID:SCR_007056) | SysZNF | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 2, 2016. SysZNF is an information resource for C2H2 Zinc Finger genes in humans and mice. C2H2 Zinc Finger genes (C2H2-ZNF) constitute the largest class of transcription factors in humans and mouse. C2H2 zinc finger proteins primarily bind to DNA. In most cases, they attach to regions near certain genes and turn the genes on and off as needed. The researches on these genes show light on the evolution of gene regulation systems and development. Therefore, we develop SysZNF (Systematical information resource of Zinc Finger genes) to collect the information related to C2H2 Zinc Finger genes. The aim of SysZNF was to provide a user-friendly interface for rendering the information (DNA, Expression, Protein, Reference and so on) of each C2H2-ZNF (e.g., ZNF10) and to enable a comprehensive analysis of C2H2-ZNF. This project was supported by the Proteome-Center at Rostock University (PCRU) who conceives the concept of the database and Key laboratory of Systems biology at the Shanghai Institute for Biological Sciences (SIBS) who implemented the database. It is maintained jointly by PCRU and SIBS. | zinc finger protein, zinc finger, cysteine, histidine, zinc ion, gene |
has parent organization: University of Rostock; Mecklenburg-Vorpommern; Germany has parent organization: Chinese Academy of Sciences; Beijing; China |
BMBF 2007DFA31040; Chinese Academy of Sciences CHN07/38 |
PMID:18974185 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03530 | SCR_007056 | SysZNF: the C2H2 Zinc Finger Gene Database, SysZNF: the Zinc Finger gene database | 2026-09-12 01:01:45 | 0 | |||||
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HIV-1 Human Protein Interaction Database Resource Report Resource Website 10+ mentions |
HIV-1 Human Protein Interaction Database (RRID:SCR_006879) | HIV-1 Human Protein Interaction Database | data or information resource, database | A database of interactions between HIV-1 and human proteins published in the peer-reviewed literature. The goal is to provide a concise, yet detailed, summary of all known interactions of HIV-1 proteins with host cell proteins, other HIV-1 proteins, or proteins from disease organisms associated with HIV/AIDS. For each HIV-1 human protein interaction the following information is provided: * NCBI Reference Sequence (RefSeq) protein accession numbers. * NCBI Entrez Gene ID numbers. * Amino acids from each protein that are known to be involved in the interaction. * Brief description of the protein-protein interaction. * Keywords to support searching for interactions. * PubMed identification numbers (PMIDs) for all journal articles describing the interaction. In addition, all protein-protein interactions documented in the database are integrated into Entrez Gene records and listed in the ''HIV-1 protein interactions'' section of Entrez Gene reports. The database is also tightly linked to other databases through Entrez Gene, enabling users to search for an abundance of information related to HIV pathogenesis and replication. | protein-protein interaction, protein, interaction, cellular protein |
is related to: VirHostNet: Virus-Host Network has parent organization: NCBI |
Human immunodeficiency virus, Type 1 | NIAID contract N01-AI-05415; NIAID N01-AI-70042 |
PMID:18927109 PMID:19025396 PMID:19262354 |
Acknowledgement requested | nif-0000-02964 | SCR_006879 | HIV-1: Human Protein Interaction Database, Human immunodeficiency virus type 1 human protein interaction database at NCBI | 2026-09-12 01:01:44 | 13 |
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