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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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jobs.ac.uk Resource Report Resource Website 1+ mentions |
jobs.ac.uk (RRID:SCR_005154) | jobs.ac.uk | job resource | International job board for careers in academic, research, science and related professions in the UK, Europe, Australasia, Africa, America and Asia & Middle East. Launched by the University of Warwick, they have grown to become the top recruitment site in their sector, attracting the most qualified and talented people from the UK, Europe and across the world. Users may subscribe to Jobs by Email for vacancies in universities, colleges, research institutions, commercial and public sector, schools and charities. You may upload your CV to give yourself an advantage by making your CV visible to top employers now! | job seeker, employer, career, curriculum vitae, recruit, employment, database, data storage repository |
is used by: NIF Data Federation is listed by: OMICtools is related to: Integrated Jobs has parent organization: University of Warwick; Coventry; United Kingdom |
The community can contribute to this resource | OMICS_01829, nlx_144167 | SCR_005154 | SciCrunch Registry | 2026-11-07 11:55:27 | 3 | ||||||||
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National COVID Cohort Collaborative Resource Report Resource Website 100+ mentions |
National COVID Cohort Collaborative (RRID:SCR_018757) | N3C | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Portal for centralized national data to study COVID-19 and identify potential treatments.Centralized, secure analytics platform where patient privacy is protected. Enables collection and analysis of clinical, laboratory and diagnostic data from hospitals and health care plans. Data are provided after executing data transfer agreement with National Center for Advancing Translational Sciences. N3C is partnership among NCATS supported Clinical and Translational Science Awards Program hubs and National Center for Data to Health with overall stewardship by NCATS. | COVID-19, national data resource, study COVID-19, COVID-19 data, COVID-19 treatment identification, NCATS, clinical data, laboratory data, diagnostic data, health care, analytics platform, patient privacy | COVID-19 | NIH | r3d100013422 | https://doi.org/10.17616/R31NJMUM | SCR_018757 | SciCrunch Registry | 2026-11-07 11:59:05 | 116 | |||||||
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Type 1 Diabetes Knowledge Portal Resource Report Resource Website 10+ mentions |
Type 1 Diabetes Knowledge Portal (RRID:SCR_020936) | T1DKP | data or information resource, data repository, data set, database, disease-related portal, portal, service resource, storage service resource, topical portal | Portal for providing data and tools to promote understanding and treatment of type 1 diabetes and its complications.Enables browsing, searching, and analysis of human genetic information linked to type 1 diabetes and related traits, while protecting integrity and confidentiality of underlying data.Represents effort to coordinate collection and deposition of genomic and epigenomic data related to type 1 diabetes and its complications. | Type 1 diabetes data, type 1 diabetes data collection, type 1 diabetes data deposition, type 1 diabetes genomic data, type 1 diabetes epigenomic data, Diabetes, type 1 diabetes |
is used by: Hypothesis Center is listed by: NIDDK Information Network (dkNET) is related to: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) is related to: NIDDK Information Network (dkNET) is related to: T1D Exchange Biobank is related to: T1D Exchange is related to: Common Metabolic Diseases Knowledge Portal |
Type 1 diabetes, Diabetes | Free, Freely available | SCR_020936 | SciCrunch Registry | T1D Knowledge Portal | 2026-11-07 12:00:13 | 18 | |||||||
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openMINDS ephys metadata model Resource Report Resource Website |
openMINDS ephys metadata model (RRID:SCR_026250) | openMINDS_ephys, openMINDS ephys | data or information resource, narrative resource, software resource, source code, standard specification | Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of electrophysiology experiments. | metadata schema, graph metadata model, metadata schemas, descriptions of electrophysiology experiments, | is related to: openMINDS metadata framework | Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/ephys.html | SCR_026250 | SciCrunch Registry | 2026-11-07 12:06:50 | 0 | ||||||||
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Integrated Models Resource Report Resource Website |
Integrated Models (RRID:SCR_001481) | Integrated Models | data or information resource, database | A virtual database of several model resources including: CellML Model Repository, ModelDB, Open Source Brain, SimTK, and ModelRun. | model, integrated, database, nif |
is used by: NIF Data Federation lists: Simtk.org lists: ModelDB lists: Open Source Brain lists: CellML Model Repository has parent organization: Integrated |
Free, Freely available | nlx_152726 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-12 https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_152726-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-12 | SCR_001481 | SciCrunch Registry | Integrated Model View, NIF Integrated Models, NIF Models, NIF Integrated Models View, Integrated Model, NIF Integrated Model | 2026-11-07 12:02:19 | 0 | ||||||
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Alzheimer Disease Preclinical Efficacy Database Resource Report Resource Website 1+ mentions |
Alzheimer Disease Preclinical Efficacy Database (RRID:SCR_021230) | data or information resource, data repository, database, service resource, storage service resource | Publicly available, searchable, data resource that aims to increase transparency, reproducibility and translatability of preclinical efficacy studies of candidate therapeutics for Alzheimer’s disease. Knowledge platform for dissemination of data and analysis to scientists, from academic centers, industry, disease focused foundations. Provides quick access and visibility to integrated preclinical efficacy data from published and unpublished studies. | Integrated preclinical efficacy data, published clinical data, unpublished studies, preclinical efficacy studies, candidate therapeutics, FAIR data | Alzheimer | NIA | Restricted | SCR_021230 | SciCrunch Registry | AlzPed | 2026-11-07 12:00:16 | 5 | ||||||||
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University of Michigan Human Organoid Core Facility Resource Report Resource Website 1+ mentions |
University of Michigan Human Organoid Core Facility (RRID:SCR_027333) | access service resource, core facility, service resource | Core enables the use of primary human organoids as tissue models for discovery, translation and regenerative medicine by providing:access to high-quality, well-characterized neonatal through adult human organoid lines from multiple organs for investigators studying human development and disease; access to detailed protocols; access to specialized, quality controlled and batch-tested reagents; expertise, guidance and training; help obtaining data;help establishing organoid lines;letters of support for grant submissions. | organoid, NAMs, primary human tissue models, drug discovery, translation, regenerative medicine, development, ABRF, RIN, RRID Community Authority, |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan; Ann Arbor; USA |
ABRF_4094 | https://coremarketplace.org/RRID:SCR_027333/?citation=1, https://www.umichttml.org/ | SCR_027333 | SciCrunch Registry | Human Organoid Multi-organ Biosample Repository, University of Michigan Human Organoid Core (UM-HOC, formerly the Translational Tissue Modeling Laboratory), University of Michigan Translational Tissue Modeling Laboratory Core Facility | 2026-11-07 12:06:56 | 4 | ||||||||
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International Image Interoperability Framework Resource Report Resource Website |
International Image Interoperability Framework (RRID:SCR_015029) | IIIF | collaboration tool, software application, software resource, systems interoperability software | Set of shared application programming interface specifications for interoperable functionality in digital image repositories. It utilizes JSON-LD, linked data, and standard W3C web protocols to parse and share digital image data, migrate across technology systems, and provide enhanced image access. | interoperability, framework, consortium, image delivery, image sharing, image community | Available to the scientific community | SCR_015029 | SciCrunch Registry | International Image Interoperability Framework (IIIF) | 2026-11-07 11:58:24 | 0 | |||||||||
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MethodBox Resource Report Resource Website 1+ mentions |
MethodBox (RRID:SCR_004928) | MethodBox | community building portal, data or information resource, data repository, data set, portal, service resource, software resource, source code, storage service resource | Collaboration environment for sharing variable sets and statistical methods for analysis across social science survey data. MethodBox enables you to browse and download datasets, share methods and scripts, find fellow researchers with similar interests and share your knowledge. MethodBox source available on Google code. Finding the variables you need to support a particular research question can be time consuming. Wading through hundreds of pages of PDF documents, codebooks and metadata and then trying to find the exact column in a huge spreadsheet can be very frustrating. MethodBox gets you to the variables faster and lets you download only the data you need. You can also share your scripts with others to allow them to adopt best practice quicker than before. | variable, survey data, method, script, data sharing, social science | has parent organization: University of Manchester; Manchester; United Kingdom | ESRC | PMID:20841736 | Account required | nlx_89127 | SCR_004928 | SciCrunch Registry | 2026-11-07 11:55:22 | 1 | ||||||
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Lung Disease Knowledge Portal Resource Report Resource Website 1+ mentions |
Lung Disease Knowledge Portal (RRID:SCR_021352) | LDKP | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Portal enables browsing, searching, and analysis of human genetic information linked to lung diseases and related traits, while protecting integrity and confidentiality of underlying data. | Human genetic information, lung diseases, data searching, data analysis | Free, Freely available | SCR_021352 | SciCrunch Registry | 2026-11-07 11:59:55 | 2 | ||||||||||
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GenomeCompiler Resource Report Resource Website 10+ mentions |
GenomeCompiler (RRID:SCR_013988) | collaboration tool, data management software, data processing software, data visualization software, software application, software resource | A software platform which enables users to conduct genetic engineering with genomic manipulation tools (provided in the platform). Genome Compiler includes multiple DNA synthesis providers, lab facility services, and advanced bioinformatics tools and genetic repositories. Data can be imported from VectorNTI, SnapGene, ApE, Clone Manager, and others. The Gibson Assembly and Restriction Ligation methods are supported by Genome Compiler. | software application, genetic engineering, genomic maniplation, tool, data visualization, data management, collaboration, platform |
is used by: Addgene is used by: Sigma-Aldrich is used by: University of California at Berkeley; Berkeley; USA is used by: Stanford University; Stanford; California is used by: Harvard University; Cambridge; United States is used by: Massachusetts Institute of Technology; Massachusetts; USA; is listed by: Connected Researchers is related to: Addgene is related to: Sigma-Aldrich is related to: Connected Researchers |
Free, Available to the research community | SCR_013988 | SciCrunch Registry | 2026-11-07 11:58:16 | 11 | ||||||||||
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SwinT-fairSIM Resource Report Resource Website 1+ mentions |
SwinT-fairSIM (RRID:SCR_024715) | data processing software, image processing software, software application, software resource, source code | This repository contain the source code for the denoising of SR-SIM images. | structured illumination microscopy, computer vision, machine learning, deep learning, | Free, Available for download, Freely available | SCR_024715 | SciCrunch Registry | 2026-11-07 12:01:19 | 1 | |||||||||||
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NeuronUnit Resource Report Resource Website 1+ mentions |
NeuronUnit (RRID:SCR_015634) | software resource, software toolkit, source code | Software toolkit for data-driven validation of neuron and ion channel models using SciUnit. NeuronUnit implements an interface to several simulators and model description languages, handles test calculations according to domain standards, and enables automated construction of tests based on data from several major public data repositories. | ion channel, neuron, validation, simulation, model description language, modeling software | uses: SciUnit | NIBIB R01EB021711 | Tutorial available | SCR_015634 | SciCrunch Registry | 2026-11-07 12:04:57 | 4 | |||||||||
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ieeg.org Resource Report Resource Website 50+ mentions |
ieeg.org (RRID:SCR_010000) | data or information resource, data repository, database, service resource, storage service resource | Repository for EEG data. The International Epilepsy Electrophysiology Portal is a collaborative initiative funded by the National Institutes of Neurological Disease and Stroke. This initiative seeks to advance research towards the understanding of epilepsy by providing a platform for sharing data, tools and expertise between researchers. The portal includes a large database of scientific data and tools to analyze these datasets. | data sharing, FASEB list | Epilepsy | NINDS 1 U24 NS063930-01 | nlx_157297 | SCR_010000 | SciCrunch Registry | International Epilepsy Electrophysiology Portal, IEEG | 2026-11-07 11:56:46 | 66 | ||||||||
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GNPS Resource Report Resource Website 500+ mentions |
GNPS (RRID:SCR_019012) | analysis service resource, data or information resource, data repository, database, production service resource, service resource, storage service resource | Web based mass spectrometry ecosystem that aims to be open access knowledge base for community wide organization and sharing of raw, processed or identified tandem mass spectrometry data. Database of mass spectrometry datasets. | Mass spectrometry, mass spectrometry data, dataset, data analysis, FASEB list | has parent organization: University of California at San Diego; California; USA | PMID:27504778 | Free, Freely available | SCR_019012 | SciCrunch Registry | Global Natural Products Social Molecular Networking | 2026-11-07 11:59:02 | 604 | ||||||||
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Wake Forest Vervet Research Colony Resource Report Resource Website 10+ mentions |
Wake Forest Vervet Research Colony (RRID:SCR_006678) | VRC, WFSM VRC | biomaterial supply resource, biospecimen repository, material resource, material storage repository, service resource, storage service resource, tissue bank | NIH funded national research resource to provide biomedical research community with access to US born, known age, pedigreed, genomically sequenced, pathogen free Caribbean origin vervet monkeys also known as African green monkeys. Provides access to animals, extensive multisystem clinical phenotyping, sample and data repositories, expertise in use of nonhuman primate models for translational studies, serves as platform for training veterinarians and other professionals in biomedical research, husbandry, clinical care, and the colony behavioral management. | blood, tissue, chlorocebus, aethiops, sabaeus, animal, model, green, monkey |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Wake Forest Primate Center |
OD OD010965 | nif-0000-25872, nlx_146208, SCR_012849 | SCR_006678 | SciCrunch Registry | Wake Forest Vervet Research Colony, Wake Forest School of Medicine Vervet Research Colony, Vervet Research Colony | 2026-11-07 11:56:16 | 10 | |||||||
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long-read-tools Resource Report Resource Website 10+ mentions |
long-read-tools (RRID:SCR_019116) | data or information resource, database, software repository, software resource | Interactive database of software tools for analysis of long read sequencing data.Catalogue of long-read sequencing data analysis tools. Catalogue of downstream analysis tools of real and synthetic long-read technologies. | Software tools collection, long read sequencing data, long read sequencing, data analysis, data analysis tools, bio.tools |
is listed by: bio.tools is listed by: Debian |
PMID:32033565 | Free, Freely available | biotools:long-read-tools | https://github.com/shaniAmare/long_read_tools, https://bio.tools/long-read-tools | SCR_019116 | SciCrunch Registry | Long-Read-Tools, long-read-tools.org | 2026-11-07 11:59:05 | 14 | ||||||
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Scayle Resource Report Resource Website |
Scayle (RRID:SCR_019064) | atlas, data or information resource, data repository, data set, portal, service resource, spatially referenced dataset, storage service resource | Open source data platform and multidisciplinary online repository where research groups and different organizations store and make public their datasets, managed by Scayle. Collection of public datasets are available through open.scayle.es and can be reused. NetFlow is network protocol developed by Cisco for collection and monitoring of network traffic flow data generated. Netflow datasets have been used to train machine learning models. | Netflow, DOROTHEA, dataset, network traffic, port scan, training data, traffic flow data | has parent organization: University of Leon, Spain | Free, Freely available, Available for download | https://open.scayle.es/dataset, https://open.scayle.es/dataset/netflow-data-with-sampling-for-test, https://open.scayle.es/dataset/netflow-data-with-sampling-for-training | https://open.scayle.es/dataset/netflow-data, https://open.scayle.es/dataset/netflow-data-without-sampling | SCR_019064 | SciCrunch Registry | open.scayle.es | 2026-11-07 11:59:10 | 0 | |||||||
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SIGNOR Resource Report Resource Website 50+ mentions |
SIGNOR (RRID:SCR_018485) | data or information resource, data repository, database, service resource, storage service resource | Software application to organize and store in structured format signaling information published in scientific literature. Information is stored as binary causative relationships between biological entities and can be represented graphically as activity flow. Each relationship is linked to literature reporting experimental evidence. Each node is annotated with chemical inhibitors that modulate its activity. Signaling information is mapped to human proteome. SIGNOR 2.0 stores manually annotated causal relationships between proteins and other biologically relevant entities including chemicals, phenotypes, complexes, etc with compliance to FAIR data principles. | Signal transduction data, signaling information, published data collection, activity flow, chemical inhibitor, human proteome, manually annotated data, protein, protein relationship, FAIR data, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: REDIportal |
ELIXIR-IIB ; EMBL-EBI ; Italian Association for Cancer Research ; Italian Node of the European ELIXIR infrastructure |
PMID:31665520 | Free, Available for download, Freely available | biotools:signor | https://bio.tools/signor | SCR_018485 | SciCrunch Registry | SIGnaling Network Open Resource, SIGNOR 2.0 | 2026-11-07 12:00:53 | 61 | |||||
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Learning Locker Resource Report Resource Website |
Learning Locker (RRID:SCR_024401) | LRS | application programming interface, data access protocol, software resource | Open source software Learning Record Store implementing the xAPI (Tin Can API) e-learning standard.Type of data repository designed to store learning activity statements generated by xAPI (Tin Can) compliant learning activities. | LRS, xAPI, store learning activity statements, | Free, Available for download, Freely available | SCR_024401 | SciCrunch Registry | Learning Record Store | 2026-11-07 12:03:24 | 0 |
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